Gene

KWMTBOMO09488

Pre Gene Modal

BGIBMGA013057

Annotation

PREDICTED:_rhomboid-related_protein_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr16(-):2386009-2396197      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 4.939

CDS

ATGAACATATTGGATCTGATTGAAAAAATTAAAGAGTATTTTGACGGGACATACGAGGAGGAGTACAGCTGCTGGCCTCCCGCCATCTGCATGATCTTCATATCCCTGGTGGAGATCATCTTCTTCGTTTACGATGCCGTGCACGGGAACACGCAGGCCAACGGGCCCATCGCCCAGATATTCATCTACAATCCTCACAAGAGACAGGAAGCGTGGCGTTTCCTGACGTACATGTTGGTCCACGTTGGCGTAGTCCATCTGCTAGTAAATCTCCTGGTGCAGCTGTTCCTCGGTGTTCCTCTAGAGATGGTGCATCGATGGTGGCGCGTGGTCCTGGTGTACCTGGCCGGCGTGGCGGCCGGCTCTCTGGCCACGAGCCTCACGGATCCTAAAGTCTATCTGGCCGGTGCTTCCGGAGGCGTTTACGCTTTGATTGCAGCTCACATCGCCACGATCATAATGAACTGGTCAGAAATGGAGTTCGCGATCATCCAGCTCTTGGTGTTTCTGCTGCTGGCGGCTGTGGACATCGGCACCGCGGTGTACGACCGGTATTGGCGGCACGTGGCCCAGAACATCGGTTACGTGGCGCATCTGGCCGGCGCTATAGCAGGTCTGCTGGTTGGCATTGGCGTATTAAGGAATCTGGAGAAGAGGAAGTGGGAGAGGCGCCTGTGGTGGGCGGCCATACTCCTGTACTTCACGCTAATGATCGCTGGGGTACTCGCCAACATATTCTGGACGGAGAGGTTCGTGATATAA

Protein

MNILDLIEKIKEYFDGTYEEEYSCWPPAICMIFISLVEIIFFVYDAVHGNTQANGPIAQIFIYNPHKRQEAWRFLTYMLVHVGVVHLLVNLLVQLFLGVPLEMVHRWWRVVLVYLAGVAAGSLATSLTDPKVYLAGASGGVYALIAAHIATIIMNWSEMEFAIIQLLVFLLLAAVDIGTAVYDRYWRHVAQNIGYVAHLAGAIAGLLVGIGVLRNLEKRKWERRLWWAAILLYFTLMIAGVLANIFWTERFVI

Uniprot

H9JU45   A0A2H1VI13   A0A437BFI3   A0A194Q161   A0A212FMT9   A0A0N1IGZ0   + More
A0A2W1BWV9   A0A2A4J2J1   A0A0N0P9Q6   A0A2W1BAK6   A0A0L7LK18   A0A1B6EF39   A0A437BFN0   A0A023F3P8   A0A224XQM7   T1IDB8   A0A1B6MUR2   A0A1B6LK46   A0A1B6LNW4   A0A067RFA3   J9JSR3   A0A2H8TWF1   E9J0X1   D6WUJ2   F4WTS2   A0A2J7RM93   A0A151ID44   A0A2Z6BDV4   A0A151IST4   A0A195F8X4   A0A195BQ57   A0A158N9M9   A0A232F589   K7J2U7   A0A151XGT9   A0A1Y1NFD7   A0A154NY62   A0A224XSH5   A0A2P8Y5C0   A0A0A1XAW1   A0A1B6JGM4   A0A1B0C057   A0A1A9Y8V7   A0A0C9RP20   A0A1A9UGF9   A0A0C9QTD3   A0A023EPU1   A0A1B0AEE2   A0A1B0FFD2   A0A182G741   A0A182GPK2   A0A0L0C008   A0A1L8E6F1   Q16V56   A0A0P6IZ43   N6UIZ3   A0A0K8URF7   T1PCV6   A0A0N1ITC5   A0A1A9WAT1   W8C3K1   A0A034W6C8   A0A1L8E945   D2A5C5   A0A1I8NXQ9   Q29IP2   B4H2T4   B4R353   A0A084VZT8   B3MRK0   A0A3B0JX04   A0A182QFR5   A0A088ANN2   A0A1I8NXU4   B4M210   A0A1W4VK20   B4PXW3   B3NUB1   E2AKE5   Q9VYW6   B4IK37   A0A026W0T4   A0A2S2QA75   A0A182M6H4   A0A182WZW8   A0A182LI92   A0A182HXG7   A0A182WAS0   A0A2M4CWT9   Q7Q2N8   A0A182TK97   A0A2M4CWW2   B4L8F8   A0A182UY09   A0A0J7K5T5   W5JR98   A0A1Q3FIC7   A0A182J758   B4JNP1   A0A3L8D3T1  

Pubmed

19121390    26354079    22118469    28756777    26227816    25474469    + More
24845553    21282665    18362917    19820115    21719571    21347285    28648823    20075255    28004739    29403074    25830018    24945155    26483478    26108605    17510324    26999592    23537049    25315136    24495485    25348373    15632085    17994087    24438588    17550304    20798317    10887159    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24508170    20966253    12364791    14747013    17210077    20920257    23761445    30249741   

EMBL

BABH01004052    BABH01004053    ODYU01002672    SOQ40469.1    RSAL01000071    RVE49139.1    + More
KQ459582    KPI99058.1    AGBW02007651    OWR55066.1    KQ460651    KPJ13022.1    KZ149935    PZC77166.1    NWSH01003665    PCG65956.1    KQ459222    KPJ02836.1    KZ150346    PZC71285.1    JTDY01000809    KOB75792.1    GEDC01000751    JAS36547.1    RVE49141.1    GBBI01003198    JAC15514.1    GFTR01005554    JAW10872.1    ACPB03008177    GEBQ01000317    JAT39660.1    GEBQ01015894    JAT24083.1    GEBQ01014651    JAT25326.1    KK852507    KDR22447.1    ABLF02020912    GFXV01006771    MBW18576.1    GL767538    EFZ13514.1    KQ971357    EFA08482.1    GL888344    EGI62387.1    NEVH01002568    PNF41965.1    KQ977991    KYM98297.1    LC373550    BBD17793.1    KQ981064    KYN09896.1    KQ981727    KYN36662.1    KQ976428    KYM87811.1    ADTU01009713    ADTU01009714    NNAY01000911    OXU25961.1    KQ982169    KYQ59521.1    GEZM01003653    GEZM01003652    JAV96654.1    KQ434782    KZC04615.1    GFTR01005497    JAW10929.1    PYGN01000910    PSN39431.1    GBXI01006432    JAD07860.1    GECU01009270    JAS98436.1    JXJN01023467    GBYB01015267    JAG85034.1    GBYB01002568    GBYB01006969    JAG72335.1    JAG76736.1    GAPW01002046    JAC11552.1    CCAG010001650    JXUM01046088    JXUM01046089    KQ561462    KXJ78500.1    JXUM01078721    KQ563083    KXJ74513.1    JRES01001171    KNC24804.1    GFDG01004501    JAV14298.1    CH477603    EAT38414.1    GDUN01000812    JAN95107.1    APGK01018095    APGK01018096    KB740070    KB632361    ENN81720.1    ERL93531.1    GDHF01023143    GDHF01008037    JAI29171.1    JAI44277.1    KA645960    AFP60589.1    KQ435833    KOX71628.1    GAMC01006034    JAC00522.1    GAKP01009091    GAKP01009090    JAC49862.1    GFDG01003522    JAV15277.1    KQ971345    EFA05728.1    CH379063    EAL32611.1    CH479204    EDW30651.1    CM000366    EDX17655.1    ATLV01018958    KE525256    KFB43482.1    CH902622    EDV34405.1    OUUW01000003    SPP77886.1    AXCN02001904    CH940651    EDW65714.2    CM000162    EDX01949.1    CH954180    EDV46026.1    GL440262    EFN66087.1    AE014298    AF318285    AY061605    AAF48067.2    AAG22342.2    AAK06754.1    AAL29153.1    CH480851    EDW51409.1    KK107502    EZA49680.1    GGMS01005446    MBY74649.1    AXCM01000074    APCN01005301    GGFL01005547    MBW69725.1    AAAB01008968    EAA13232.4    GGFL01005632    MBW69810.1    CH933815    EDW07933.1    LBMM01013033    KMQ85853.1    ADMH02000702    ETN65279.1    GFDL01007738    JAV27307.1    CH916371    EDV92334.1    QOIP01000014    RLU14801.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000053240    UP000218220    + More
UP000037510    UP000015103    UP000027135    UP000007819    UP000007266    UP000007755    UP000235965    UP000078542    UP000078492    UP000078541    UP000078540    UP000005205    UP000215335    UP000002358    UP000075809    UP000076502    UP000245037    UP000092460    UP000092443    UP000078200    UP000092445    UP000092444    UP000069940    UP000249989    UP000037069    UP000008820    UP000019118    UP000030742    UP000095301    UP000053105    UP000091820    UP000095300    UP000001819    UP000008744    UP000000304    UP000030765    UP000007801    UP000268350    UP000075886    UP000005203    UP000008792    UP000192221    UP000002282    UP000008711    UP000000311    UP000000803    UP000001292    UP000053097    UP000075883    UP000076407    UP000075882    UP000075840    UP000075920    UP000007062    UP000075902    UP000009192    UP000075903    UP000036403    UP000000673    UP000075880    UP000001070    UP000279307   

PRIDE

H9JU45    Q9VYW6   

Pfam

PF01694   Rhomboid        + More
PF13499   EF-hand_7
PF14529   Exo_endo_phos_2

Interpro

IPR035952   Rhomboid-like_sf        + More
IPR017213   Peptidase_S54_rhomboid_met       
IPR022764   Peptidase_S54_rhomboid_dom       
IPR018247   EF_Hand_1_Ca_BS       
IPR002048   EF_hand_dom       
IPR011992   EF-hand-dom_pair       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF47473   SSF47473        + More
SSF56219   SSF56219       

Gene 3D

1.20.1540.10     3.60.10.10    

CDD

cd00051  EFh

ProteinModelPortal

H9JU45   A0A2H1VI13   A0A437BFI3   A0A194Q161   A0A212FMT9   A0A0N1IGZ0   + More
A0A2W1BWV9   A0A2A4J2J1   A0A0N0P9Q6   A0A2W1BAK6   A0A0L7LK18   A0A1B6EF39   A0A437BFN0   A0A023F3P8   A0A224XQM7   T1IDB8   A0A1B6MUR2   A0A1B6LK46   A0A1B6LNW4   A0A067RFA3   J9JSR3   A0A2H8TWF1   E9J0X1   D6WUJ2   F4WTS2   A0A2J7RM93   A0A151ID44   A0A2Z6BDV4   A0A151IST4   A0A195F8X4   A0A195BQ57   A0A158N9M9   A0A232F589   K7J2U7   A0A151XGT9   A0A1Y1NFD7   A0A154NY62   A0A224XSH5   A0A2P8Y5C0   A0A0A1XAW1   A0A1B6JGM4   A0A1B0C057   A0A1A9Y8V7   A0A0C9RP20   A0A1A9UGF9   A0A0C9QTD3   A0A023EPU1   A0A1B0AEE2   A0A1B0FFD2   A0A182G741   A0A182GPK2   A0A0L0C008   A0A1L8E6F1   Q16V56   A0A0P6IZ43   N6UIZ3   A0A0K8URF7   T1PCV6   A0A0N1ITC5   A0A1A9WAT1   W8C3K1   A0A034W6C8   A0A1L8E945   D2A5C5   A0A1I8NXQ9   Q29IP2   B4H2T4   B4R353   A0A084VZT8   B3MRK0   A0A3B0JX04   A0A182QFR5   A0A088ANN2   A0A1I8NXU4   B4M210   A0A1W4VK20   B4PXW3   B3NUB1   E2AKE5   Q9VYW6   B4IK37   A0A026W0T4   A0A2S2QA75   A0A182M6H4   A0A182WZW8   A0A182LI92   A0A182HXG7   A0A182WAS0   A0A2M4CWT9   Q7Q2N8   A0A182TK97   A0A2M4CWW2   B4L8F8   A0A182UY09   A0A0J7K5T5   W5JR98   A0A1Q3FIC7   A0A182J758   B4JNP1   A0A3L8D3T1  

KEGG

101736190    K02857 rhomboid-related protein 1/2/3 [EC:3.4.21.105] | (RefSeq) rhomboid-related protein 2

GO

GO:0004252   GO:0016021   GO:0005509   GO:0038005   GO:0005887   GO:0030173   GO:0006508   GO:0016020   GO:0019752   GO:0016491   GO:0006108   GO:0030060   GO:0016615   GO:0000049   GO:0016876  

Length:

253

Number of predicted TMHs:

7

Exp number of AAs in TMHs:

151.62622

Exp number, first 60 AAs:

21.94123

Total prob of N-in:

0.68379

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  43

outside

44  -  76

TMhelix

77  -  99

inside

100  -  105

TMhelix

106  -  128

outside

129  -  131

TMhelix

132  -  154

inside

155  -  160

TMhelix

161  -  183

outside

184  -  192

TMhelix

193  -  212

inside

213  -  224

TMhelix

225  -  247

outside

248  -  253

 

 

Pi

220.079101

Theta

168.789105

Tajima's D

0.944691

CLR

0

CSRT

0.646017699115044

Interpretation

Uncertain