SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09479
Pre Gene Modal
BGIBMGA013061
Annotation
PREDICTED:_GPI_transamidase_component_PIG-S_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.706
 

Sequence

CDS
ATGTGGGCCTCTGCTTCATTCGTAGGGGTCCTAATCATCATCGGGATGCCGCTATGGTGGAAAACTACGGAAGTCTACAGGGTGTCGCTGCCGTACGAAAAGATTTCATCGTTCAAACCTCTATCGCATTTCGTCACAACTGAACTGAAAGTCTTAGCCAACGATGACGCTACAGCATCTAAGATCGTCAGCGAGATACAGAAGGCATTTGCTGAATCTGATATAATAAAGATCAAAATCGAGAAAACAGTAATGTCGGAGCGACAACAGCACATTTTGCGGTCGGTGGTTGATATGGAGAAAGCCGTCGAAGAACTAGCTTCTACATTGGACCTCGACCAAGAAAATATATTCCACGTGGTGCAAAAGAAATCGTTGTCTCACAATATCTGGGTTGGCAACGAAAGAATAATGTTCTTCGATGATGAGAAAGCATCAGAAACGATAGTGAAAGCGTTAGACGGCTGGATATATCAGACTTCGGTACTCCGAGGATCCAGATCGGACACTCCTGATCAAGCCCGAAGCACGAGGTTCCCGCCGGAGTCGGCCTACCACATCACACTGTCCATAGTGCATCCAAGGCCTGATACAATGAAAGTTGTTTGGAATGCCGCTGAAGCTGTCGAGGATTACATTGGCAGCTTTGTCGACGAGTTAAGCTCCTTGCACAACTTCACGCTGAAGTCGCAATGGCTTCATCTACTCGACTTCGACTTTCAAGCTAGAGAGGTAAAAGAAGTCAGTGAATGGGGACGTCACTTCGCCGTGCGTCAGGACAGGCTGTCATTGTTATTGACAAGGCTCGAGGAACGAGCTGCGACGCACGTCTCTGAGCTATCAACGATCAACCTGGCGCTCTACATCGTTCCCTGCGATAAAGCTCCCATCATTATATACGATAATGAAGGTCGCAAAAATCCTTTGTCGATACAAGCATTTATGTCCCCCAAGTGGGGGGGCGTGGTGATCGCCAGTCCCCCGGCCGAGCAGTGCTCCCAGCAGGTCCGAGAGTTCGAGCCCAGCGTGGGACAGATCATGGGCGCGTTCGTGTCCCACCTCAGGGAGTTGCTCGGGATCACGAAAAAGGACGCAATCGAAGGAGCACACTTAGAGCCTTCGAGGTCGGTGTCGCCGCGCCGCTGGGAGGTGGACGCGCTACTCCGCATCAGGACCTTAGAGCAGGTCACATCCGCTGAAAGAACTCTACAGTCTCTAGCGCAATTATTGGAGGAGATATCGAACATAGTGATAAACGATGAAGTGGGCGCGTCCATCGCGGCCGCGGTGTCCGAGCTGGAGGCGGGCGCGGGGGAGGGCGCGGGGGCGGACGCGGCGCGGGCGGGGCGGGCGCACGCGCATGCGCAGCGCGCCTTCACGCACCCCGGTCTACTCGCACTGCTGTACTTCCCGGACGATCAGAAATACGCGATCTACATACCGTTGTTTTTACCGATAATGTTCCCGGTGGTTTTGTCATTGAGAATATTGTTATTATGGTTCATGGGGAAGCCGGTGCACAAAGAAAAAACTGATTGA
Protein
MWASASFVGVLIIIGMPLWWKTTEVYRVSLPYEKISSFKPLSHFVTTELKVLANDDATASKIVSEIQKAFAESDIIKIKIEKTVMSERQQHILRSVVDMEKAVEELASTLDLDQENIFHVVQKKSLSHNIWVGNERIMFFDDEKASETIVKALDGWIYQTSVLRGSRSDTPDQARSTRFPPESAYHITLSIVHPRPDTMKVVWNAAEAVEDYIGSFVDELSSLHNFTLKSQWLHLLDFDFQAREVKEVSEWGRHFAVRQDRLSLLLTRLEERAATHVSELSTINLALYIVPCDKAPIIIYDNEGRKNPLSIQAFMSPKWGGVVIASPPAEQCSQQVREFEPSVGQIMGAFVSHLRELLGITKKDAIEGAHLEPSRSVSPRRWEVDALLRIRTLEQVTSAERTLQSLAQLLEEISNIVINDEVGASIAAAVSELEAGAGEGAGADAARAGRAHAHAQRAFTHPGLLALLYFPDDQKYAIYIPLFLPIMFPVVLSLRILLLWFMGKPVHKEKTD

Summary

EMBL
ODYU01001508    SOQ37811.1    NWSH01001675    PCG70448.1    RSAL01000093    RVE47889.1    + More
KQ459582    KPI99044.1    AGBW02007651    OWR55079.1    KQ460651    KPJ13034.1    ODYU01008673    SOQ52455.1    KZ288204    PBC33322.1    GL887844    EGI69864.1    KQ978730    KYN28955.1    ADTU01022700    ADTU01022701    ADTU01022702    KQ982409    KYQ56676.1    KQ981986    KYN31240.1    KQ435784    KOX74552.1    GL766616    EFZ14930.1    PBC33320.1    GL443269    EFN62290.1    NEVH01016329    PNF25674.1    PNF25670.1    PNF25673.1    KQ435090    KZC14605.1    JR036511    JR036513    AEY57188.1    AEY57190.1    LBMM01003497    KMQ93464.1    KQ976745    KYM75427.1    KK853383    KDR07999.1    KQ414619    KOC67769.1    GAMC01004368    JAC02188.1    KK107105    EZA59527.1    GL451493    EFN79210.1    GDHF01030674    GDHF01002354    JAI21640.1    JAI49960.1    GAKP01007457    GAKP01007456    JAC51495.1    GEBQ01016594    JAT23383.1    GBXI01007433    JAD06859.1    NNAY01000414    OXU28577.1    GECZ01008465    JAS61304.1    AAAB01008859    EAA07616.5    UFQS01000993    UFQT01000993    SSX08310.1    SSX28333.1    AXCN02000138    ADMH02001019    ETN64436.1    GGFL01000133    MBW64311.1    GGFL01000134    MBW64312.1    CH477443    EAT40793.1    GGFJ01003665    MBW52806.1    EZ422979    ADD19255.1    GGFJ01003666    MBW52807.1    DS235813    EEB17458.1    GGFK01007878    MBW41199.1    JRES01000062    KNC34516.1    AXCM01000497    JQ042683    AEZ67828.1    JXJN01020367    AJWK01009480    PYGN01001609    PSN33756.1    JXUM01017367    JXUM01017368    KQ560481    KXJ82201.1    JXUM01088539    JXUM01088540    JXUM01088541    KQ563708    KXJ73459.1    CM000160    EDW98864.1    CM000364    EDX14310.1    CH902617    KPU80500.1    AE014297    AY061834    AAF56366.2    AAL27645.1    GANO01002094    JAB57777.1    CH954182    EDV53776.1    BT056260    ACL68707.1    GFDF01000939    JAV13145.1    BT003598    AAO39601.1    CM000070    EDY67871.2    CH940652    EDW59129.2    CH916377    EDV90665.1    ACPB03006555    QOIP01000011    RLU17264.1    GFTR01006954    JAW09472.1    GAHY01001763    JAA75747.1    GECL01001988    JAP04136.1    OUUW01000005    SPP80334.1    APCN01000594    CH479179    EDW25015.1    CVRI01000069    CRL06983.1    CH933806    EDW14751.2    CH964272    EDW84736.2    CP012526    ALC46780.1   
Pfam
PF10510   PIG-S        + More
PF13661   2OG-FeII_Oxy_4
PF10637   Ofd1_CTDD
PF00781   DAGK_cat
Interpro
IPR019540   PtdIno-glycan_biosynth_class_S        + More
IPR006620   Pro_4_hyd_alph       
IPR019601   Oxoglutarate/Fe-dep_Oase_C       
IPR005123   Oxoglu/Fe-dep_dioxygenase       
IPR039558   TPA1/OFD1_N       
IPR017438   ATP-NAD_kinase_N       
IPR016064   NAD/diacylglycerol_kinase_sf       
IPR001206   Diacylglycerol_kinase_cat_dom       
SUPFAM
SSF111331   SSF111331       
Gene 3D

Ontologies

Topology

Length:
512
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
36.31497
Exp number, first 60 AAs:
13.36438
Total prob of N-in:
0.69734
POSSIBLE N-term signal
sequence
inside
1  -  1
TMhelix
2  -  20
outside
21  -  476
TMhelix
477  -  499
inside
500  -  512
 
 

Population Genetic Test Statistics

Pi
211.171097
Theta
159.952758
Tajima's D
1.504466
CLR
0.202128
CSRT
0.782310884455777
Interpretation
Uncertain
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