Gene

KWMTBOMO09477

Annotation

PREDICTED:_ataxin-2-like_protein_[Bombyx_mori]

Location

Bomo_Chr16(-):2008592-2033232      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.123

CDS

ATGAATAATAAACGGAAGAGTCGCCAAGGACCACCGAGGTCACCACGTGGTCGCGTGGTGGCCGAGGGAGTTTACAACAACGCGCATTTCATGCACGCTGCCACATCACTCGTTGGCGACACCGTTCAAGTTTTAACGCAATCAGGATGCCTCTGGGAGGGAGTTTTCAAAACGTTCAGTGCTCAATTTGAGGTGGTATTAGAAGTGGCTCACCGCGTCGACCAAGAAGGAGTCGTAGCTGTGGACTCCGTTGTGAAGAAACTGATCTTCAAGCCCCAGGATGTTGTATACATCAGGGCCAAGGACTCTGACCTTGAATATGCGACACACGACGTTTTCCAAACAGACACAGCTATATCTAGCAAATTTAATGGCAACGGTCGTTCCCTGGAGGAGCGCCACCTAGAGCCGTGGGACGGCTGCGACGGCGACTCCGCCGAAGCGCCCTCGGTCAACGGCGACGTGCGCCTCGACGACCTCGAGCAGCTCGACCACTGCGCCAACGGCTGGGACGCCAACGACATGTTCCGCAAGAACGAGGAGGTGTACGGCGTCCACAGCACGTACGACCACTCGCTCACCGGATACACGGTCCAGCTACAGAGGAAGGACACGCAAGACTACCGCGAAGCGGAGGCTAAGGCGGAAGAGATCGCTGCAGAAATTGAAAGCGCGGCTTCGTATAAAGCGCGCATCGAACTGGAGAACGGCGACGAAGAGGAGAGGTTCGCGGCCGTGCTGCGGCCCCAGGACAGCAGCAGTTCTACCGGGAAATACGTTATACCGAACAAGAGAAAAAATATGCAGGTGAGTATGGGCGGCAAGCTGGTGAAGCCATCGGGCCCCAACAACAACAACAGCAACAACAACGGAGGCGGCAGCAGCGGGACCGCGGCGGCGCCCGGGCCCTCGCCCCGCGCGCCGCCCCCCTCCCCGCCCAAGGACAAGGAGCAGCGGCCGCGCAACCACGTGACGCCGCCGCGGCACGACGACGCGCCGGTAACGCACCACTACCCTCACTTGTCTCCATTAAATGGTGCGCTTTGGTACACCAACTCCAAAGAGTACCGTACTCTTAGCAAACTAAAAACAATACTGAACACAATTTAA

Protein

MNNKRKSRQGPPRSPRGRVVAEGVYNNAHFMHAATSLVGDTVQVLTQSGCLWEGVFKTFSAQFEVVLEVAHRVDQEGVVAVDSVVKKLIFKPQDVVYIRAKDSDLEYATHDVFQTDTAISSKFNGNGRSLEERHLEPWDGCDGDSAEAPSVNGDVRLDDLEQLDHCANGWDANDMFRKNEEVYGVHSTYDHSLTGYTVQLQRKDTQDYREAEAKAEEIAAEIESAASYKARIELENGDEEERFAAVLRPQDSSSSTGKYVIPNKRKNMQVSMGGKLVKPSGPNNNNSNNNGGGSSGTAAAPGPSPRAPPPSPPKDKEQRPRNHVTPPRHDDAPVTHHYPHLSPLNGALWYTNSKEYRTLSKLKTILNTI

Uniprot

A0A2W1BQ50   A0A212FN13   A0A437BBY2   A0A2H1VC46   A0A194Q0F7   E2BCC4   + More
A0A1W4WPL1   A0A1W4WNL0   A0A1L8DNH2   A0A2J7Q1B1   A0A154PL40   A0A1B0GND3   A0A2P8YC41   U5ENL3   K7IS50   A0A232EV32   A0A1B0GIK0   D2A4A5   A0A0P6IT79   A0A1S4FHL5   A0A0T6B3M9   A0A1B6G4L2   A0A0L7QL66   A0A1B6KE66   A0A067QTC3   A0A2M4BBE3   A0A2M4BBB3   A0A2M3ZGB5   T1HA84   A0A023EZR3   E0VHN6   A0A0K8TMK3   T1J5D2   A0A087U164  

Pubmed

28756777    22118469    26354079    20798317    29403074    20075255    + More
28648823    18362917    19820115    26999592    24845553    25474469    20566863    26369729   

EMBL

KZ149935    PZC77182.1    AGBW02007651    OWR55080.1    RSAL01000093    RVE47891.1    + More
ODYU01001508    SOQ37814.1    KQ459582    KPI99041.1    GL447257    EFN86660.1    GFDF01006194    JAV07890.1    NEVH01019430    PNF22356.1    KQ434954    KZC12543.1    AJVK01029320    AJVK01029321    AJVK01029322    PYGN01000713    PSN41810.1    GANO01004027    JAB55844.1    NNAY01002058    OXU22211.1    AJWK01014216    KQ971348    EFA04818.2    GDUN01000932    JAN94987.1    LJIG01015973    KRT81996.1    GECZ01012403    GECZ01007874    JAS57366.1    JAS61895.1    KQ414934    KOC59271.1    GEBQ01030248    GEBQ01024214    JAT09729.1    JAT15763.1    KK853042    KDR12155.1    GGFJ01001191    MBW50332.1    GGFJ01001188    MBW50329.1    GGFM01006780    MBW27531.1    ACPB03011480    ACPB03011481    GBBI01004431    JAC14281.1    DS235171    EEB12922.1    GDAI01002222    JAI15381.1    JH431859    KK117679    KFM71103.1   

Proteomes

UP000007151    UP000283053    UP000053268    UP000008237    UP000192223    UP000235965    + More
UP000076502    UP000092462    UP000245037    UP000002358    UP000215335    UP000092461    UP000007266    UP000053825    UP000027135    UP000015103    UP000009046    UP000054359   

Pfam

PF14438   SM-ATX        + More
PF06741   LsmAD
PF07145   PAM2

Interpro

IPR025852   SM_dom_ATX        + More
IPR009604   LsmAD_domain       
IPR009818   Ataxin-2_C       

ProteinModelPortal

A0A2W1BQ50   A0A212FN13   A0A437BBY2   A0A2H1VC46   A0A194Q0F7   E2BCC4   + More
A0A1W4WPL1   A0A1W4WNL0   A0A1L8DNH2   A0A2J7Q1B1   A0A154PL40   A0A1B0GND3   A0A2P8YC41   U5ENL3   K7IS50   A0A232EV32   A0A1B0GIK0   D2A4A5   A0A0P6IT79   A0A1S4FHL5   A0A0T6B3M9   A0A1B6G4L2   A0A0L7QL66   A0A1B6KE66   A0A067QTC3   A0A2M4BBE3   A0A2M4BBB3   A0A2M3ZGB5   T1HA84   A0A023EZR3   E0VHN6   A0A0K8TMK3   T1J5D2   A0A087U164  

KEGG

101743989    no KO assigned | (RefSeq) ataxin-2-like protein

GO

GO:0010603   GO:0010494   GO:0034063   GO:0016021  

Length:

369

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0564

Exp number, first 60 AAs:

0.0555

Total prob of N-in:

0.14074

outside

1  -  369

 

 

Pi

188.920122

Theta

151.820772

Tajima's D

0.710325

CLR

11.612906

CSRT

0.576071196440178

Interpretation

Uncertain