Gene

KWMTBOMO09469

Pre Gene Modal

BGIBMGA013069

Annotation

PREDICTED:_uncharacterized_protein_LOC106712994_[Papilio_machaon]

Location

Bomo_Chr16(-):1792948-1795472      View in EpiBrowser

Full name

tRNA-dihydrouridine(47) synthase [NAD(P)(+)]      

Alternative Name

tRNA-dihydrouridine synthase 3

Location in the cell

Nuclear   Reliability : 3.972

CDS

ATGACTTCGTATTGTTTAGACATAGAGGCCTTCATTAGCGAAGTCAGTAAGCACCCGCAAATCTGGGACCTAAACAATGAAGATTTTAAATATAAACATCGCAAACAGAACGCATGGGCAGAGGTATCCCGGATATTCATCAACGACTTCGCCGATATGACCCAGGGAGAAAAGTTGGATGTATATAAAAAGCTTAACGGGAAATGGCGCAACATACGAGATTCGTACGTACGCAGTCTCAGGAAAGGTTACGGTTACATGTATGCGAAACATCTGTCCTTCCTGAACAACATATACAAGAGCACCAGCCAATCTGGCAGCGACGCTGAGCAAGACGACAATTGGCAGAGCGACGACGACTCGGCCAAACTGAGCAACGTCTCATTCAGAAAGAGCTTCAATATCAAAAACTGCGATGGAATCACGGAACGAAGCGTGGACTGGCAGAGTGATGGCGAGGAGATTCCTCTCAGAGCTCCAGTCAGAAGTGTTAGGAAACGTCGGAAAATCATTCCGGAGATTGAGTACGTCGAGCCTCTCGCGGAACCAACCTGCAGCAGTACAGGCGAGGACGACGACAGATCCTTCTTCGAATCCGTTCTGCCGGCAGTGAGAGTGTTCGATATTGACCAGAAACTAGAATTCCGTGGTGAAGTACTTAGATTAATCAAAATGATAAGATATAGGAAGATAAAAATTAAATCCGATCCAACTGAAGACTTATAG

Protein

MTSYCLDIEAFISEVSKHPQIWDLNNEDFKYKHRKQNAWAEVSRIFINDFADMTQGEKLDVYKKLNGKWRNIRDSYVRSLRKGYGYMYAKHLSFLNNIYKSTSQSGSDAEQDDNWQSDDDSAKLSNVSFRKSFNIKNCDGITERSVDWQSDGEEIPLRAPVRSVRKRRKIIPEIEYVEPLAEPTCSSTGEDDDRSFFESVLPAVRVFDIDQKLEFRGEVLRLIKMIRYRKIKIKSDPTEDL

Cofactor

FMN

Similarity

Belongs to the dus family. Dus3 subfamily.

Uniprot

H9JU57   A0A2W1BQ58   A0A2A4K4Q0   A0A2H1VGY6   A0A0L7L5Y0   A0A0N0PCI2   + More
A0A1E1VYW4   A0A194Q0C4   A0A1B6HE62   A0A1B6ED40   A0A0J7K819   A0A182H144   A0A182GBC7   A0A0P4VZP6   T1HA02   A0A0P4W9X1   A0A0N5D5I8   A0A044V964   A0A3P6U100   A0A182EJB9   A0A0P4W354   A0A154PSQ0   A0A2S2P7V0   A0A0R3R2M1   A0A0P4WIC9   A0A0H5S1L7   A0A0N4TX01   A0A212EVC2   J9EDY0   A0A158Q924   A0A3P7E1U8   B3P4R7   A0A1E1WMV5   Q9VHL0   A0A0P4WQG1   B3LXX9   B4PTW9   A0A1B6LQR7   Q294I7   A0A2J7PBC8   B4HKZ8   A0A0A9WIZ1   A0A1B6HFE0   A0A1W4VQ52   B4QXW8   A0A444T9D1   A0A2H1WP32   B4KDM4   A0A067R379   A0A067RKZ3   B4GL21   A0A2J7PWA5   A0A0L7KVT9   B4LWV6   D0QWN7   A0A0L7LV89   A0A3S2PHX9   A0A0N1ICP7   H9IVN4   A0A212FPD0   A0A0L7KQU0   A0A437BW74   A0A0T6BB68   A0A212FB26   A0A0N1PGE3   A0A0P4WL80   A0A437BSU1   A0A194QLR2  

EC Number

1.3.1.-

Pubmed

19121390    28756777    26227816    26354079    26483478    27129103    + More
22919073    17885136    22118469    26850696    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    15632085    25401762    24845553    19859648   

EMBL

BABH01004110    KZ149935    PZC77192.1    NWSH01000176    PCG78743.1    ODYU01002266    + More
SOQ39524.1    JTDY01002813    KOB70669.1    KQ460651    KPJ13045.1    GDQN01011180    JAT79874.1    KQ459582    KPI99032.1    GECU01034815    JAS72891.1    GEDC01001514    JAS35784.1    LBMM01011903    KMQ86558.1    JXUM01102437    KQ564727    KXJ71823.1    JXUM01052702    KQ561745    KXJ77651.1    GDKW01001597    JAI54998.1    ACPB03005729    GDRN01106646    GDRN01106645    JAI57540.1    UYYF01004606    VDN05797.1    CMVM020000255    UYRW01003313    VDK88653.1    GDRN01106643    JAI57541.1    KQ435163    KZC14931.1    GGMR01012912    MBY25531.1    UZAG01019009    VDO41994.1    GDRN01070949    JAI63786.1    LN856534    CRZ22603.1    UZAD01013389    VDN94591.1    AGBW02012210    OWR45442.1    ADBV01004300    EJW80661.1    UYWW01001533    VDM10647.1    CH954181    EDV49861.1    GDQN01002878    JAT88176.1    AE014297    AY121643    AAF54294.1    AAM51970.1    GDRN01070950    JAI63785.1    CH902617    EDV42835.1    CM000160    EDW96580.1    GEBQ01014063    JAT25914.1    CM000070    EAL28977.1    NEVH01027118    NEVH01016302    NEVH01007440    PNF13628.1    PNF25815.1    PNF35690.1    CH480815    EDW42962.1    GBHO01035202    JAG08402.1    GECU01034306    JAS73400.1    CM000364    EDX13705.1    SAUD01040394    SAUD01007315    RXG51670.1    RXG62280.1    ODYU01010020    SOQ54829.1    CH933806    EDW13858.1    KK852738    KDR17414.1    KK852454    KDR23653.1    CH479185    EDW38245.1    NEVH01020936    PNF20615.1    JTDY01005074    KOB67397.1    CH940650    EDW66677.1    FJ821033    ACN94736.1    JTDY01000013    KOB79428.1    RSAL01000027    RVE51911.1    KQ459572    KPI99593.1    BABH01039610    AGBW02003328    OWR55560.1    JTDY01007070    KOB65480.1    RSAL01000004    RVE54666.1    LJIG01002364    KRT84576.1    AGBW02009394    OWR50923.1    KQ460448    KPJ14681.1    GDRN01021545    JAI67801.1    RSAL01000012    RVE53523.1    KQ461196    KPJ06467.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000036403    + More
UP000069940    UP000249989    UP000015103    UP000046394    UP000276776    UP000024404    UP000271087    UP000077448    UP000076502    UP000050602    UP000006672    UP000038020    UP000278627    UP000007151    UP000004810    UP000093561    UP000050640    UP000270924    UP000008711    UP000000803    UP000007801    UP000002282    UP000001819    UP000235965    UP000001292    UP000192221    UP000000304    UP000288706    UP000009192    UP000027135    UP000008744    UP000008792    UP000283053   

PRIDE

H9JU57    Q9VHL0    H9IVN4   

Pfam

PF02944   BESS        + More
PF10545   MADF_DNA_bdg
PF01093   Clusterin
PF01207   Dus

Interpro

IPR006578   MADF-dom        + More
IPR004210   BESS_motif       
IPR039353   TF_Adf1       
IPR000753   Clusterin-like       
IPR013785   Aldolase_TIM       
IPR000571   Znf_CCCH       
IPR018517   tRNA_hU_synthase_CS       
IPR001269   tRNA_hU_synthase       
IPR035587   DUS-like_FMN-bd       

Gene 3D

3.20.20.70    

CDD

cd02801  DUS_like_FMN

ProteinModelPortal

H9JU57   A0A2W1BQ58   A0A2A4K4Q0   A0A2H1VGY6   A0A0L7L5Y0   A0A0N0PCI2   + More
A0A1E1VYW4   A0A194Q0C4   A0A1B6HE62   A0A1B6ED40   A0A0J7K819   A0A182H144   A0A182GBC7   A0A0P4VZP6   T1HA02   A0A0P4W9X1   A0A0N5D5I8   A0A044V964   A0A3P6U100   A0A182EJB9   A0A0P4W354   A0A154PSQ0   A0A2S2P7V0   A0A0R3R2M1   A0A0P4WIC9   A0A0H5S1L7   A0A0N4TX01   A0A212EVC2   J9EDY0   A0A158Q924   A0A3P7E1U8   B3P4R7   A0A1E1WMV5   Q9VHL0   A0A0P4WQG1   B3LXX9   B4PTW9   A0A1B6LQR7   Q294I7   A0A2J7PBC8   B4HKZ8   A0A0A9WIZ1   A0A1B6HFE0   A0A1W4VQ52   B4QXW8   A0A444T9D1   A0A2H1WP32   B4KDM4   A0A067R379   A0A067RKZ3   B4GL21   A0A2J7PWA5   A0A0L7KVT9   B4LWV6   D0QWN7   A0A0L7LV89   A0A3S2PHX9   A0A0N1ICP7   H9IVN4   A0A212FPD0   A0A0L7KQU0   A0A437BW74   A0A0T6BB68   A0A212FB26   A0A0N1PGE3   A0A0P4WL80   A0A437BSU1   A0A194QLR2  

KEGG

101737259    no KO assigned | (RefSeq) uncharacterized LOC101737259

GO

GO:0005634   GO:0003677   GO:0017150   GO:0050660   GO:0046872   GO:0006508   GO:0016021   GO:0008271   GO:0016020   GO:0016301   GO:0016773   GO:0006418   GO:0000049   GO:0016876  

PANTHER

PTHR12243  

Subcellular location

Nucleus  

Length:

241

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00038

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05513

outside

1  -  241

 

 

Pi

211.388133

Theta

192.905047

Tajima's D

0.310389

CLR

0.11505

CSRT

0.455977201139943

Interpretation

Uncertain