SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09467  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013070
Annotation
PREDICTED:_hsp70-binding_protein_1_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.674 Extracellular   Reliability : 1.475 Nuclear   Reliability : 1.152
 

Sequence

CDS
ATGAGTTCGAATAATACGCAGAATAACACGATTGCCGGAGCTCTGACTTATCCGACAAGAAGTCAAGATGAAGTCCTACCAAATCAGCCGAGGCAGCCAAGAAACCTGCAAGGACTTTTACGGTTTGCAATGGAAGCCACAAAAGCTGAAGATGCACCAGGGAACTCGGAATTAGGACCAATTGATGATGAAAGACGCAAATTCCTTGAAGACGCCCTAAAGAGTCTGACAGTGAACATTGCTGAAGTGTTACTGAACGCCATCAGAATTCTCACCAATACTGAAAGGATTCGTAGCATACAGTTTGGGGAACCACTACCAGAAGACGTACAGGCGGCTTTTGACAATGTCCTTGAATATATTGACGATATTGATACAGCAAATGACTTCTATAAGATGGGAGGGTTTGCTATGTTTCCAATATGCTATGGAAGCGAAAATGAGAAGGTCCGTGCCCTCGCCAGTACGGTCCTGGCTGAGCTCTGTCAGAACAATCCGTTCTGCCAGGAGAAGTTCTTAGAGTACGGTCTGCTGAACGTTCTACTCACTCTAGTGCAATCAGAGCAAGGCGAAGCCCTCGTCAAGTGCCTATATGCTTTATCATGCGGTTGCCGCGAGTACTCGCCCGCGTGTCGCTCGCTGGTGTCGCGCGGGGGGTGCGGGGCGTTGGGGGCGGCGCTGGCGCAGGACGAGCCCTCCGCCAGGACCAAGGCCGCCTTCCTCATCAGGTACCTGGCCAGCCAATACAGCGACGCTAAAGAGCAGTTCATCCAGCACAATGTAGTCAGGACCATAGCTGAACAACTGAGAGGGGGTCGTGACGCGACCAGTGAGCACTTCCTGAACTTACTCTGCACTCTGCTCGAGGACCTGGACCCCAGGGTCCTGGACCAATGCCGGGACCCCACCCTACACTTGAAGGAGACTTTAGAACAACACTTAGGACACCCTGAGCTGGAAAGTTTTACGGAAGAAAAGGAGTATTGTGAAGAGATCCTCAGGAAGGTGTTTGTCGGGCATAAGCCAGTGGAGATCGTGGTTGAAGAAGCCGATAGATAG
Protein
MSSNNTQNNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLLRFAMEATKAEDAPGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAELCQNNPFCQEKFLEYGLLNVLLTLVQSEQGEALVKCLYALSCGCREYSPACRSLVSRGGCGALGAALAQDEPSARTKAAFLIRYLASQYSDAKEQFIQHNVVRTIAEQLRGGRDATSEHFLNLLCTLLEDLDPRVLDQCRDPTLHLKETLEQHLGHPELESFTEEKEYCEEILRKVFVGHKPVEIVVEEADR

Summary

Similarity
Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
EMBL
BABH01004119    GAIX01003510    JAA89050.1    RSAL01000093    RVE47903.1    AGBW02007651    + More
OWR55092.1    NWSH01000176    PCG78738.1    KZ149935    PZC77196.1    KQ460651    KPJ13047.1    AK401783    KQ459582    BAM18405.1    KPI99029.1    GEZM01014118    JAV92197.1    KQ971371    EFA09946.1    LJIG01009263    KRT83430.1    MH365661    QBB01470.1    KQ434856    KZC08673.1    GALX01002351    JAB66115.1    KQ980989    KYN10604.1    NEVH01009070    PNF33925.1    KQ414614    KOC68800.1    NNAY01001594    OXU23488.1    GL435204    EFN73812.1    KQ981264    KYN44031.1    KQ438551    KOX67201.1    GANO01002904    JAB56967.1    ADTU01001346    KQ978220    KYM96307.1    KQ976519    KYM82152.1    CH477228    EAT47053.1    JXUM01118898    KQ566235    KXJ70295.1    GAPW01002696    JAC10902.1    GAPW01002695    JAC10903.1    AXCN02000808    EAT47052.1    AAAB01008964    EAA12545.5    APCN01000775    KZ288427    PBC25906.1    KK853042    KDR12144.1    KQ982353    KYQ57202.1    ATLV01023791    KE525346    KFB49557.1    APGK01019170    BT127640    KB740092    KB632310    AEE62602.1    ENN81479.1    ERL92102.1    KK107064    QOIP01000008    EZA60831.1    RLU19169.1    AK417974    BAN21189.1    GFDL01009136    JAV25909.1    GL445565    EFN89391.1    MF797800    AWR93091.1    CVRI01000038    CRK94438.1    GDIQ01246006    LRGB01000944    JAK05719.1    KZS14854.1    DS235379    EEB15449.1    UFQS01001121    UFQT01001121    UFQT01001734    SSX09102.1    SSX31570.1    GDIQ01016625    JAN78112.1    GDIQ01233155    JAK18570.1    GFAC01003084    JAT96104.1    GDIP01249396    JAI74005.1    GBBM01001702    JAC33716.1    RQTK01000037    RUS90247.1    GBHO01023983    GBHO01023982    GBHO01023981    GDHC01006148    GDHC01001932    JAG19621.1    JAG19622.1    JAG19623.1    JAQ12481.1    JAQ16697.1    GBRD01002506    JAG63315.1    GBRD01002507    JAG63314.1    GDIP01144257    JAJ79145.1    GDIP01242563    JAI80838.1    KK854643    PTY17572.1    DS231816    EDS37565.1    GDRN01039609    JAI67186.1    GL767895    EFZ12946.1    GFAA01001602    JAU01833.1    LBMM01015172    KMQ84904.1    GEFM01000371    JAP75425.1    GANP01004704    JAB79764.1    GEFH01003026    JAP65555.1    GFTR01005108    JAW11318.1   
Pfam
PF08609   Fes1        + More
PF02150   RNA_POL_M_15KD
PF01096   TFIIS_C
Interpro
IPR016024   ARM-type_fold        + More
IPR011989   ARM-like       
IPR013918   Nucleotide_exch_fac_Fes1       
IPR000225   Armadillo       
IPR019761   DNA-dir_RNA_pol-M_15_CS       
IPR001529   DNA-dir_RNA_pol_M/15kDasu       
IPR001222   Znf_TFIIS       
IPR034012   Zn_ribbon_RPB9_C       
SUPFAM
SSF48371   SSF48371       
Gene 3D

Ontologies

Topology

Length:
352
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.12164
Exp number, first 60 AAs:
0
Total prob of N-in:
0.09429
outside
1  -  352
 
 

Population Genetic Test Statistics

Pi
195.90157
Theta
166.432921
Tajima's D
0.688479
CLR
0.875037
CSRT
0.564721763911804
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 YIASQYSDAK 100.00 2e-07
25044914 MGFCSDREDINSICITAIHR 100.00 2e-07
27102218 TIAEQIR 100.00 2e-07
28467696 MGESDDCIVR 100.00 2e-07
27102218 FNIEKDIAAFIK 100.00 3e-05
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