Silkworm Genome Informatics Database

Gene

KWMTBOMO09462

Pre Gene Modal

BGIBMGA012789

Annotation

PREDICTED:_ATP-binding_cassette_sub-family_A_member_5-like_[Bombyx_mori]

Location

Bomo_Chr16(+):1556161-1558727 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.16

CDS

ATGCTACGAAACATCATCAAACGGGGGTCGGTGTCCGTGTCTGGGAGCGTGGAGCTCGACGGGGAGGTGGAGGTGGTGGACGCGTCCATACACACGCCACTGGTGGCCGGCACCCCGCCCCTCGTCAGGCACCGACACCACAGGTCTGAGTCTGGCGGCGGGGCGAGCGCGGAGGCCGCCATCGCGCTAGTGGGCGAGCTGTTCCCGGCGGCCGTGCTGGAGGAGAGCTTCGCGGAGCGGCTCGTGTTCTCCGTGCCGCAGTCCGCGGTCTCCAGCCTCGCGCGCTGCTTCCAGCAGATCGAGGACGCTAAAGAGAAACTGAACATAGTCGAGTACAGCTTCAGTCAGACAACCCTCGAGCAGGTGTTCCTCAAGTTTGCGCAATCGGAGAACGTGGAAACCCTAGACCAAGATCACTAG

Protein

MLRNIIKRGSVSVSGSVELDGEVEVVDASIHTPLVAGTPPLVRHRHHRSESGGGASAEAAIALVGELFPAAVLEESFAERLVFSVPQSAVSSLARCFQQIEDAKEKLNIVEYSFSQTTLEQVFLKFAQSENVETLDQDH

Uniprot

H9JTC7 A0A194Q6J9 A0A3S2LJA8 A0A2W1BQ17 A0A2H1V1C0 A0A2A4IY78 + More
A0A0N1IFN1

Pubmed

19121390 26354079 28756777

EMBL

BABH01004135 BABH01004136 BABH01004137 BABH01004138 KQ459582 KPI99025.1 + More
RSAL01000093 RVE47906.1 KZ149935 PZC77159.1 ODYU01000187 SOQ34556.1 NWSH01005566 PCG64122.1 KQ460651 KPJ13052.1

Proteomes

UP000005204 UP000053268 UP000283053 UP000218220 UP000053240

PRIDE

H9JTC7

Pfam

PF00005 ABC_tran

Interpro

IPR027417   P-loop_NTPase        + More
IPR017871   ABC_transporter_CS
IPR003439   ABC_transporter-like
IPR003593   AAA+_ATPase
IPR020846   MFS_dom
IPR026082   ABCA

SUPFAM

SSF52540 SSF52540

CDD

cd06174 MFS

ProteinModelPortal

H9JTC7 A0A194Q6J9 A0A3S2LJA8 A0A2W1BQ17 A0A2H1V1C0 A0A2A4IY78 + More
A0A0N1IFN1

PDB

5XJY E-value=3.08275e-10, Score=149

KEGG

101744996 K05648 ATP-binding cassette, subfamily A (ABC1), member 5 | (RefSeq) ATP-binding cassette sub-family

PATHWAY

02010 ABC transporters - Bombyx mori (domestic silkworm)

GO

GO:0016021 GO:0042626 GO:0005524

PANTHER

PTHR19229

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.18453

Exp number, first 60 AAs:

0.07685

Total prob of N-in:

0.29761

outside

1 - 139

Pi

173.92633

Theta

140.407861

Tajima's D

0.957146

CLR

0.242023

CSRT

0.64396780160992

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics