Gene

KWMTBOMO09458

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr16(-):1512587-1515120      View in EpiBrowser

Full name

Integrin beta       + More
Sodium/hydrogen exchanger      

Location in the cell

Mitochondrial   Reliability : 1.544 Nuclear   Reliability : 1.797

CDS

ATGACCCTGGCGACTCTCAATACCCGGACCCTGCGGCTTGACGAACATATTGAGGAACTGGAAGCGGAATTAGGAAGGATACGATGGCACGTACTAGGGTTGTGCGAAGTCCGAAGACAGGGGGAGGACGTCATAACTCTGGACTCAGGCCACCTATTCTACTTCCGGGAAGGAGACCAACCTGGACAAGGTGGAGTTGGCTTTCTCGTCAATAAAATCCTGACGGACAACATTATAGAGGTATCCAGTGTGTCGACACGGGTAGCGTATCTCGTAATTAAGCTCACCGAAAGGTACTCTCTTAAGGTGGTGCAAGTATACGCACCGACTTCGTCATACTCGGATGACGATGTGGAGATTGTGTACGACGATATCACCAGGGCTCTGCACGATACCACAAAAGCCCACTTCAATGTTGTCATGGGAGATTTTAACGCTAAAGTGGGAGTACAGACTTGCGACGAATCGGTGCTAGGATCCTTCGGTTATGGATGTAGGAACCACAGGGGGCAAATGCTAGTCAACTTCCTTCAGCGTGAGAGGCTCTTTCTAATGAACTCGTTCTTTAAAAAGAAGCCACAAAGGAAGTGGACTTGGCTAAGCCCCGACACTGTGACGAAAAACGAGATAGACTTTATTATGACGGACAAGAAGCATATATTCAGGGATGTCTCTGTGATCAGCAGGTTCAATACCGGTAGTGATCACCGACTTGTCAGAGGCACACTGAATATGGACTTCAAGTTAGAACGCACTCGTCTAATAAAGTCTACGCTTCGACCCAGCCTACATCACATGGCTGTAGATCCGGAGCAATTCCAGCTAGATCTCCACAACCGATTCGCTGCCTTGGAAACCACCACAGACGTAGACGAGGCCTTAGATGGCGTGGTGAGGACACTGAGACAGGAAGGACAGAGACTGTGTCCAAAGGGTCGTACAGGCAGAACATCAAAGTTATCATCCGAGACTCTCCGGCTAATGGAAGAAAGGCGAGAAAACACACAGGCCACACAATCAGAGAAGGTGGCTCTTAATAAGAAAATCAGGACGCTGGTACGACGCGATCTCCGACGGTACAATACTCAGCGGATCAATGACGCAATCGAGCAAAACCGAGGAGCCAAGGTGTTCGTGCAGCCTCTTGGTAAAAGCCACCTTACAAAACTGACCAAAAAGGATGGCCAAATTCTCGCCTCCAAACCGGAGATTCTCAAGGAACTTGAGGACTTCTACGGAGGCCTCTATACTTCCAAAGCAACTAAGCCTGTCTCCGACCCAGCAGATGTCCGAGCCACACTGTCCCGCCACTACACCGACGAGCTGCCACAGATTAGTGTAGACGAGATCGGGATGGCTCTTGAAAATCTTAAAAACGGAAAGGCCCCGGGGGAAGATGGTGTTACTTCTGAGCTCTTGAAAGCAGGAGGTCTTCCTGTTATTAGGGAGCTCCAGAAGCTCTTCAACACTGTCCTCTTTACCGGTAAAACTCCAAGGGCGTGGAGCAGGAGCATAGTTGTCCTTTTCTTTAAGAAAGGAGATAAAACACTTTTAAAGAATTATCGCCCCATCTCGCTCCTGAGCCACGTCTACAAATTGTTTTCAAGAGTCATAACGAATCGTCTTGCTCAGAGACTTGACGACTTCCAGCCTCCGGAACAGGCAGGATTCCGAAGAGGATTTGGTACCGTGGACCACATTCACACAGTTCGGCAGATTATACAGAAGACTGAAGAGTATAATCTGCCACTATGTCTGGCGTTTGTGGACTACGAGAAAGCCTTTGACTCGATCGAGACCTGGGCTGTTCTGGAATCTTTGCAGCGGTGTCAAGCTGACTGGCGATACATCGATGCACTAAGATGCTTGTACGATGCCGCTACAATGACCGTCCAAGTACAGAAAGACCAGACGAGACCAATCCAGTTGCGCAGAGGTGTAAGACAGGGGGATATTATATCCCCGAAACTGTTTACAAACGCACTGGAGGACGTTTTCAAGACTCTGGACTGGAACGGACGCGGCATTAACATAAACGGCGAGTACATCTCACATCTTCGCTTTGCCGATGATATCGTCATCATGGCGGAATCGCTGCAGAACTTACAAGAAATGGTGCACAGCCTTAATGCTGCATCCCAACGGGTTGGCCTCGGAATGAACTTGGATAAAACCAAGGTAATGTTTAACGGAAACGTCATTCCGAGACCAATCGATGTTGGCGGTACACCTCTCGAAGTTGTTCAAGAGTATGTCTACCTGGGACAGACCCTACAACTAGGTCTTTTCGTCGCCCATACCACAATGTCTGAAGACAAAGGTCTATAA

Protein

MTLATLNTRTLRLDEHIEELEAELGRIRWHVLGLCEVRRQGEDVITLDSGHLFYFREGDQPGQGGVGFLVNKILTDNIIEVSSVSTRVAYLVIKLTERYSLKVVQVYAPTSSYSDDDVEIVYDDITRALHDTTKAHFNVVMGDFNAKVGVQTCDESVLGSFGYGCRNHRGQMLVNFLQRERLFLMNSFFKKKPQRKWTWLSPDTVTKNEIDFIMTDKKHIFRDVSVISRFNTGSDHRLVRGTLNMDFKLERTRLIKSTLRPSLHHMAVDPEQFQLDLHNRFAALETTTDVDEALDGVVRTLRQEGQRLCPKGRTGRTSKLSSETLRLMEERRENTQATQSEKVALNKKIRTLVRRDLRRYNTQRINDAIEQNRGAKVFVQPLGKSHLTKLTKKDGQILASKPEILKELEDFYGGLYTSKATKPVSDPADVRATLSRHYTDELPQISVDEIGMALENLKNGKAPGEDGVTSELLKAGGLPVIRELQKLFNTVLFTGKTPRAWSRSIVVLFFKKGDKTLLKNYRPISLLSHVYKLFSRVITNRLAQRLDDFQPPEQAGFRRGFGTVDHIHTVRQIIQKTEEYNLPLCLAFVDYEKAFDSIETWAVLESLQRCQADWRYIDALRCLYDAATMTVQVQKDQTRPIQLRRGVRQGDIISPKLFTNALEDVFKTLDWNGRGININGEYISHLRFADDIVIMAESLQNLQEMVHSLNAASQRVGLGMNLDKTKVMFNGNVIPRPIDVGGTPLEVVQEYVYLGQTLQLGLFVAHTTMSEDKGL

Similarity

Belongs to the integrin beta chain family.
Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.

Feature

chain  Integrin beta

Uniprot

D7F157   A0A437B0R4   D7F165   D7F160   D7F164   D7F159   + More
D7F158   D7F166   A0A437BHD1   A0A3S2N805   A0A2H1VS24   A0A2W1BZV1   A0A1S3HCU5   D7F176   A0A016S1D2   D7F179   A0A0N5C0B1   D7F177   A0A0K0FAW8   A0A016V9Q8   A0A016WPY4   A0A016WCB8   A0A016V4Q8   A0A016ULU9   A0A023EXV2   A0A016V6A2   A0A0P4VWD0   A0A016SG46   A0A016TK11   A0A2H1WF27   A0A016W4R1   A0A016UN79   A0A023EWU8   A0A016RUR3   A0A016RV73   A0A016V419   D7F178   A0A016THC6   A0A016RRX8   A0A016TTX3   A0A016SLV8   A0A016T8K0   A0A2R2MNC1   A0A016U3L3   A0A016U352   A0A016SVA2   A0A016T7J7   A0A016SW37   A0A016T9D3   A0A016TIG5   A0A016T9A5   A0A016UY78   E3NC15   A0A016WE57   A0A016WUN2   A0A016W1X2   A0A016WFS9   A0A016T4C4   A0A016WYN9   A0A016WRX9   A0A016VLP0   A0A016SCL7   A0A016TQJ1   A0A016X207   A0A016V007   A0A016SY13   A0A016U6B7   A0A016U123   A0A016VT25   A0A016S795   A0A016TK92   A0A016UJS4   A0A016WPX9   A0A016WA79   A0A016TX70   A0A016VVN3   A0A016SCZ8   A0A016W5S4   E3MH09   A0A016S7F6   A0A016SXL6   A0A016S5B2   A0A016SQY7   A0A016SCT9   E3NV79   A0A016S6J0   A0A016WW86   A0A016SPR9   K7HC61   A0A016VGA0  

Pubmed

20470440    28756777    25730766    25474469    27129103   

EMBL

FJ265542    ADI61810.1    RSAL01000220    RVE44071.1    FJ265550    ADI61818.1    + More
FJ265545    ADI61813.1    FJ265549    ADI61817.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    FJ265551    ADI61819.1    RSAL01000057    RVE49824.1    RSAL01001818    RVE40675.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    FJ265561    ADI61829.1    JARK01001655    EYB84321.1    FJ265564    ADI61832.1    FJ265562    ADI61830.1    JARK01001351    EYC23458.1    JARK01000173    EYC41342.1    JARK01000388    EYC37469.1    JARK01001354    EYC21713.1    JARK01001370    EYC16150.1    GBBI01004876    JAC13836.1    JARK01001353    EYC22263.1    GDKW01001596    JAI54999.1    JARK01001565    EYB89683.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    ODYU01008249    SOQ51673.1    JARK01001337    EYC34625.1    EYC16376.1    GBBI01004877    JAC13835.1    JARK01001711    EYB81734.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    EYC21986.1    FJ265563    ADI61831.1    JARK01001438    EYC02111.1    JARK01001730    EYB81048.1    JARK01001415    EYC05858.1    JARK01001543    EYB91356.1    JARK01001462    EYB98944.1    JARK01001395    EYC09730.1    EYC09729.1    JARK01001505    EYB94618.1    JARK01001736    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    EYB94617.1    JARK01001459    EYB99276.1    JARK01001435    EYC02496.1    EYB99275.1    JARK01001359    EYC20105.1    DS268591    EFO92565.1    JARK01000343    EYC38099.1    JARK01000109    EYC42952.1    EYC33297.1    JARK01000302    EYC38674.1    JARK01001475    EYB97550.1    JARK01000063    EYC44387.1    JARK01000132    EYC42415.1    JARK01001344    EYC28216.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01001421    EYC04912.1    JARK01000008    EYC46079.1    JARK01001357    EYC20551.1    JARK01001497    EYB95322.1    JARK01001389    EYC10874.1    JARK01001401    EYC08686.1    JARK01001340    EYC30744.1    JARK01001621    EYB86109.1    EYC03125.1    JARK01001372    EYC15614.1    JARK01000161    EYC41641.1    JARK01000460    EYC36749.1    JARK01001407    EYC07212.1    EYC30828.1    JARK01001581    EYB88505.1    JARK01000802    EYC34990.1    DS268444    EFP01729.1    JARK01001612    EYB86585.1    JARK01001500    EYB95049.1    JARK01001626    EYB85833.1    JARK01001524    EYB92970.1    JARK01001582    EYB88498.1    DS270843    EFO97547.1    JARK01001618    EYB86258.1    JARK01000078    EYC43871.1    JARK01001531    EYB92324.1    JARK01001346    EYC26445.1   

Proteomes

UP000283053    UP000085678    UP000024635    UP000046392    UP000035680    UP000008281    + More
UP000005237   

PRIDE

D7F157    D7F165    D7F160    D7F164    D7F159    D7F158    + More
D7F166    D7F176    D7F179    D7F177    D7F178   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF13520   AA_permease_2
PF00362   Integrin_beta
PF03372   Exo_endo_phos
PF10328   7TM_GPCR_Srx
PF00999   Na_H_Exchanger

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR020846   MFS_dom       
IPR002293   AA/rel_permease1       
IPR032695   Integrin_dom_sf       
IPR036465   vWFA_dom_sf       
IPR015812   Integrin_bsu       
IPR002035   VWF_A       
IPR002369   Integrin_bsu_VWA       
IPR016186   C-type_lectin-like/link_sf       
IPR016187   CTDL_fold       
IPR001507   ZP_dom       
IPR019430   7TM_GPCR_serpentine_rcpt_Srx       
IPR017452   GPCR_Rhodpsn_7TM       
IPR018422   Cation/H_exchanger_CPA1       
IPR006153   Cation/H_exchanger       
IPR004709   NaH_exchanger       

SUPFAM

SSF56219   SSF56219        + More
SSF53300   SSF53300       
SSF69179   SSF69179       
SSF56436   SSF56436       

Gene 3D

3.60.10.10     3.40.50.410     3.10.100.10    

CDD

cd06174  MFS

ProteinModelPortal

D7F157   A0A437B0R4   D7F165   D7F160   D7F164   D7F159   + More
D7F158   D7F166   A0A437BHD1   A0A3S2N805   A0A2H1VS24   A0A2W1BZV1   A0A1S3HCU5   D7F176   A0A016S1D2   D7F179   A0A0N5C0B1   D7F177   A0A0K0FAW8   A0A016V9Q8   A0A016WPY4   A0A016WCB8   A0A016V4Q8   A0A016ULU9   A0A023EXV2   A0A016V6A2   A0A0P4VWD0   A0A016SG46   A0A016TK11   A0A2H1WF27   A0A016W4R1   A0A016UN79   A0A023EWU8   A0A016RUR3   A0A016RV73   A0A016V419   D7F178   A0A016THC6   A0A016RRX8   A0A016TTX3   A0A016SLV8   A0A016T8K0   A0A2R2MNC1   A0A016U3L3   A0A016U352   A0A016SVA2   A0A016T7J7   A0A016SW37   A0A016T9D3   A0A016TIG5   A0A016T9A5   A0A016UY78   E3NC15   A0A016WE57   A0A016WUN2   A0A016W1X2   A0A016WFS9   A0A016T4C4   A0A016WYN9   A0A016WRX9   A0A016VLP0   A0A016SCL7   A0A016TQJ1   A0A016X207   A0A016V007   A0A016SY13   A0A016U6B7   A0A016U123   A0A016VT25   A0A016S795   A0A016TK92   A0A016UJS4   A0A016WPX9   A0A016WA79   A0A016TX70   A0A016VVN3   A0A016SCZ8   A0A016W5S4   E3MH09   A0A016S7F6   A0A016SXL6   A0A016S5B2   A0A016SQY7   A0A016SCT9   E3NV79   A0A016S6J0   A0A016WW86   A0A016SPR9   K7HC61   A0A016VGA0  

PDB

6AR3     E-value=7.80499e-06,     Score=121

KEGG

101743122    no KO assigned | (RefSeq) uncharacterized LOC101743122

GO

GO:0004519   GO:0003964   GO:0016021   GO:0016758   GO:0006885   GO:0015385  

PANTHER

PTHR10082   PTHR10110  

Subcellular location

Membrane  

Length:

775

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00762000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00026

outside

1  -  775

 

 

Pi

165.429525

Theta

63.056641

Tajima's D

1.612305

CLR

29.680749

CSRT

0.809659517024149

Interpretation

Uncertain