Gene

KWMTBOMO09451  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013072

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_47-like_[Papilio_machaon]

Location

Bomo_Chr16(-):1432165-1436860      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.85

CDS

ATGAGTGCTTGGCCGGAAGTTGTGACCGCAAAAGAGGAGAATCGTCACGAAATTAAGTTGGCGGGAGCCGCTATATCGAAACGAATCTCTGAACATGGCTTAGACAAAAATATCTTCACCTTAACAAACATAAACTTATTAAACATCAGTGATACATGTCTGCACGCTATACCAGATGAAATCAAGAACTTAATTAATCTCCAAAGCTTGTTAATGTTTGGAAATAAGATTGAAGTTTTTAATGAAAACATAACCACACTTCGAAAGTTAAAAGTCCTCGATTTATCAAGAAACGAATTAAAAAGCATCCCAGAGAGCTTGAACAACATGAAAGAACTAACGAGTATCAATTTCAGCTCAAATCAAATAGAAGATATGCCGAAAATTGGCGATTTACCAAACTTAATAATAATAGACATTTCCAATAATAAACTGAAGAGTTTCTTGGACGTGGAATCGGCTAACTTGCCTCATTTGACAGACTTGAAGCTAAAAAGTAATTTGATTGAATCTATTCCAAGTTGTATCGGACAAAAACTTTCATCACTCAAGAACTTTGATATCAGCGACAATCAAATAAATGTTGTACCTGGCGAAGTAGCTAACATGTCGAAAATTAAAGATCTCAACTTAAAGGGGAACAAGCTATCAGACAAGCGGTTCATGAAACTGGTTGATCAGTGTCGCACTAAACAAATTATGGACTACATCCGCGATCACTGCCCCAAAACAGAACAAACTCAACAGTCATCCAAATCCAAAACAAAAAAAGGAAAGAAAGAAGAACCTCATACAGAAAATGTGGAAGCTGAATTGTGTAACTCAATGAAGATTTTACATGTCTCTGACGATGTATTGAACGTTAAAATTGTTGAGTCTCAGGTTGGCAGTGTCCGACCTTATATACTTTGTTGCATAATAAAGGATCTAAATTTCACAGATATATTGTTTAAAAAGTTTATACAAATGCAAACAAGACTGCATGACACCGTCTGTGATAAGAGAAATGTAGCCACAATTGCAACACATGACCTTAACAAATTACCTCCAGGTGATCTTGTGTACACAGCAAAGCCTCCGTCAATGCTAAGCCTTATTCCGTTAATGAGGACAAAACCCTACACCGGAGAACAACTAGTCCAGCAGTTAGTAGCAGAAGCGGAAGCACTCAGGAAGGAGAAAAAAAGAAATGTTTACTCGGGGATCCATAAGTACCTGTACCTGTTAGAAGGCAAAGCAGTCTATGCTTGCCTCCAAGACTCATCCGGTAGAGTAATCAGCTTCCCACCTATCACCAATGCTGACGTAACGAAGATGTCATCAGAAAGTAAAGCCATGCTGATAGAGGTGACATCTCATTCTTCACTCGGAGCCTGTAAGATGGTGATGGATAAAATATTGCAAGAATGTTTGATGCTAGGCATCGGAGCTGACTCCCAGGACGGTTTTCATGCGCTCACTGTGCAACAGGTCAAAGTAGTCGACCCGGATGGTAACCTGAAGTCAGTGTATCCATCGCGAACTGACTGTGTGTATGATGATACGAACATCAAAGTCATCAGGATGCCTAAAAAATAA

Protein

MSAWPEVVTAKEENRHEIKLAGAAISKRISEHGLDKNIFTLTNINLLNISDTCLHAIPDEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESIPSCIGQKLSSLKNFDISDNQINVVPGEVANMSKIKDLNLKGNKLSDKRFMKLVDQCRTKQIMDYIRDHCPKTEQTQQSSKSKTKKGKKEEPHTENVEAELCNSMKILHVSDDVLNVKIVESQVGSVRPYILCCIIKDLNFTDILFKKFIQMQTRLHDTVCDKRNVATIATHDLNKLPPGDLVYTAKPPSMLSLIPLMRTKPYTGEQLVQQLVAEAEALRKEKKRNVYSGIHKYLYLLEGKAVYACLQDSSGRVISFPPITNADVTKMSSESKAMLIEVTSHSSLGACKMVMDKILQECLMLGIGADSQDGFHALTVQQVKVVDPDGNLKSVYPSRTDCVYDDTNIKVIRMPKK

Uniprot

H9JU60   A0A2H1VXF0   A0A2A4K312   A0A194Q0B5   A0A212FMX7   A0A437BC24   + More
A0A0N1PG54   A0A2J7Q743   A0A067R2N7   A0A2P8Y3F0   A0A026VZW6   A0A2A3EJ94   A0A087ZQ06   A0A151JU34   A0A232F8E1   A0A151IHN0   A0A151I5C9   K7ITZ8   A0A158NWS6   F4WQ34   A0A0M9A5L9   A0A154PFM3   E9IVZ5   A0A0L7QUQ7   A0A195EDC8   A0A310SUS1   A0A1W4XC59   A0A151WY70   A0A1Y1M253   A0A411G7L6   A0A0T6B631   A0A1S3H2L3   D2A5G5   T1J910   A0A087TK97   A0A2H4KB79   V5HD17   A0A131XZC1   A0A293LVL2   A0A2R5LM91   E0VK28   A0A224YVM6   B7QHR9   L7M8B3   A0A131YM47   A0A131XHY6   A0A0P4WT28   G3MPG1   A0A1E1XSV8   A0A210Q877   A0A443R7J4   V4AF39   A0A1A8EX67   A0A1A8CG66   A0A1A8DM65   A0A1A8MRD3   A0A1D1V3R2   A0A1A8UPU1   A0A1W0WWQ4   A0A1A8IIY3   A0A1A7YYD1   A0A1A8S5I9   A0A3Q0SBH2   A0A1E1X6C6   A0A2C9JGF0   A0A085NDM6   A0A3Q3A144   A0A3B3YCA9   A0A2U9BYK1   A0A3B3VDK4   A0A2I4C794   A0A3Q3MAN9   T1KEG9   A0A3P8YPV7   R7TQ29   A0A3Q1HIW5   A0A3Q3J341   A0A3Q1GMK9   A0A315WB05   A0A3B4CLM5   A0A0S7L5Q9   A0A3B5L107   A0A3P8SSQ0   A0A3Q2VXV4   A0A3Q1AUG3   A0A3P8Q9K3   A0A3P9D223   A0A3B5QE97   W4ZCP1   A0A3Q1GX48   A0A293LFE6   I3JHM1   A0A3Q3XGY2   A0A3B4G1L7   A0A3P9P2H6   A0A3B4UP26   A0A3B4YN92  

Pubmed

19121390    26354079    22118469    24845553    29403074    24508170    + More
30249741    28648823    20075255    21347285    21719571    21282665    28004739    18362917    19820115    25765539    20566863    28797301    25576852    26830274    28049606    22216098    29209593    28812685    23254933    27649274    28503490    15562597    24929829    25069045    29703783    25186727    23542700   

EMBL

BABH01004143    ODYU01005031    SOQ45510.1    NWSH01000207    PCG78406.1    KQ459582    + More
KPI99022.1    AGBW02007651    OWR55095.1    RSAL01000093    RVE47904.1    KQ460651    KPJ13056.1    NEVH01017447    PNF24401.1    KK853054    KDR12004.1    PYGN01000977    PSN38760.1    KK107522    QOIP01000001    EZA49348.1    RLU27616.1    KZ288227    PBC31797.1    KQ981799    KYN35696.1    NNAY01000667    OXU27096.1    KQ977586    KYN01687.1    KQ976434    KYM87199.1    ADTU01002979    GL888262    EGI63657.1    KQ435750    KOX76349.1    KQ434893    KZC10612.1    GL766449    EFZ15281.1    KQ414731    KOC62387.1    KQ979074    KYN22854.1    KQ760241    OAD61290.1    KQ982651    KYQ52834.1    GEZM01045089    JAV77926.1    MH366084    QBB01893.1    LJIG01009584    KRT82787.1    KQ971345    EFA05368.1    JH431968    KK115611    KFM65536.1    KX550100    ASR74814.1    GANP01011496    JAB72972.1    GEFM01003202    JAP72594.1    GFWV01007078    MAA31808.1    GGLE01006422    MBY10548.1    DS235237    EEB13734.1    GFPF01010521    MAA21667.1    ABJB010721290    ABJB011098710    DS941498    EEC18391.1    GACK01004957    JAA60077.1    GEDV01008214    JAP80343.1    GEFH01002454    JAP66127.1    GDRN01025029    JAI67735.1    JO843762    AEO35379.1    GFAA01001052    JAU02383.1    NEDP02004651    OWF44940.1    NCKU01001793    RWS11240.1    KB201656    ESO95482.1    HAEB01004594    SBQ51121.1    HADZ01014856    SBP78797.1    HAEA01006153    SBQ34633.1    HAEF01018083    HAEG01003687    SBR59242.1    BDGG01000002    GAU93088.1    HADY01000667    HAEJ01009169    SBS49626.1    MTYJ01000037    OQV19627.1    HAED01010835    HAEE01002120    SBQ97074.1    HADW01014092    HADX01013390    SBP35622.1    HAEI01011240    SBS12843.1    GFAC01004592    JAT94596.1    KL363198    KL367513    KFD55740.1    KFD67572.1    KFD67577.1    CP026253    AWP09334.1    CAEY01002034    AMQN01002628    KB309694    ELT93616.1    NHOQ01000099    PWA33003.1    GBYX01184558    JAO84846.1    AAGJ04054098    AAGJ04054099    GFWV01002733    MAA27463.1    AERX01037014   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000283053    UP000053240    + More
UP000235965    UP000027135    UP000245037    UP000053097    UP000279307    UP000242457    UP000005203    UP000078541    UP000215335    UP000078542    UP000078540    UP000002358    UP000005205    UP000007755    UP000053105    UP000076502    UP000053825    UP000078492    UP000192223    UP000075809    UP000085678    UP000007266    UP000054359    UP000009046    UP000001555    UP000242188    UP000285301    UP000030746    UP000186922    UP000261340    UP000076420    UP000264800    UP000261480    UP000246464    UP000261500    UP000192220    UP000261640    UP000015104    UP000265140    UP000014760    UP000265040    UP000261600    UP000257200    UP000261440    UP000261380    UP000265080    UP000264840    UP000257160    UP000265100    UP000265160    UP000002852    UP000007110    UP000005207    UP000261620    UP000261460    UP000242638    UP000261420    UP000261360   

PRIDE

H9JU60   

Pfam

PF13855   LRR_8        + More
PF12799   LRR_4
PF00176   SNF2_N
PF00271   Helicase_C
PF03483   B3_4
PF00560   LRR_1

Interpro

IPR025875   Leu-rich_rpt_4        + More
IPR005146   B3/B4_tRNA-bd       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR020825   Phe-tRNA_synthase_B3/B4       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR000330   SNF2_N       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       

SUPFAM

SSF52540   SSF52540       

Gene 3D

3.50.40.10     3.80.10.10     3.40.50.10810    

CDD

cd00079  HELICc

ProteinModelPortal

H9JU60   A0A2H1VXF0   A0A2A4K312   A0A194Q0B5   A0A212FMX7   A0A437BC24   + More
A0A0N1PG54   A0A2J7Q743   A0A067R2N7   A0A2P8Y3F0   A0A026VZW6   A0A2A3EJ94   A0A087ZQ06   A0A151JU34   A0A232F8E1   A0A151IHN0   A0A151I5C9   K7ITZ8   A0A158NWS6   F4WQ34   A0A0M9A5L9   A0A154PFM3   E9IVZ5   A0A0L7QUQ7   A0A195EDC8   A0A310SUS1   A0A1W4XC59   A0A151WY70   A0A1Y1M253   A0A411G7L6   A0A0T6B631   A0A1S3H2L3   D2A5G5   T1J910   A0A087TK97   A0A2H4KB79   V5HD17   A0A131XZC1   A0A293LVL2   A0A2R5LM91   E0VK28   A0A224YVM6   B7QHR9   L7M8B3   A0A131YM47   A0A131XHY6   A0A0P4WT28   G3MPG1   A0A1E1XSV8   A0A210Q877   A0A443R7J4   V4AF39   A0A1A8EX67   A0A1A8CG66   A0A1A8DM65   A0A1A8MRD3   A0A1D1V3R2   A0A1A8UPU1   A0A1W0WWQ4   A0A1A8IIY3   A0A1A7YYD1   A0A1A8S5I9   A0A3Q0SBH2   A0A1E1X6C6   A0A2C9JGF0   A0A085NDM6   A0A3Q3A144   A0A3B3YCA9   A0A2U9BYK1   A0A3B3VDK4   A0A2I4C794   A0A3Q3MAN9   T1KEG9   A0A3P8YPV7   R7TQ29   A0A3Q1HIW5   A0A3Q3J341   A0A3Q1GMK9   A0A315WB05   A0A3B4CLM5   A0A0S7L5Q9   A0A3B5L107   A0A3P8SSQ0   A0A3Q2VXV4   A0A3Q1AUG3   A0A3P8Q9K3   A0A3P9D223   A0A3B5QE97   W4ZCP1   A0A3Q1GX48   A0A293LFE6   I3JHM1   A0A3Q3XGY2   A0A3B4G1L7   A0A3P9P2H6   A0A3B4UP26   A0A3B4YN92  

PDB

3L4G     E-value=4.13099e-23,     Score=269

KEGG

101738617    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 47-like

GO

GO:0004826   GO:0003723   GO:0005524   GO:0004812   GO:0004721   GO:0005515   GO:0008299   GO:0008152   GO:0016301   GO:0016773   GO:0006418   GO:0000049   GO:0016876  

Length:

525

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00285

Exp number, first 60 AAs:

0.00102

Total prob of N-in:

0.00261

outside

1  -  525

 

 

Pi

214.12063

Theta

172.591909

Tajima's D

0.406883

CLR

185.00319

CSRT

0.490225488725564

Interpretation

Uncertain