SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09450  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013073
Annotation
PREDICTED:_DNA_repair_and_recombination_protein_RAD54-like_[Amyelois_transitella]
Full name
DNA repair and recombination protein RAD54-like      
Alternative Name
Protein okra
Location in the cell
Nuclear   Reliability : 4.232
 

Sequence

CDS
ATGCGCCGCAGTCGAGCGCCAAGCCAAATAGGCTCTGGAGAGAGTGTTTTCAAGAGTCCATTACTAGACTCCGCCAAGCGAAAGAAACGAGAATGCACAAGAATACCGCTAGCACAGAAAACTCCTTCTCAAACTTTACCTTCTTCAGATCACGAAAACATTATCCGTCAAATACTTAGTAAGCCCTTTAAAGTTCCTATATCAAACTATGTCTCCTCGTATTGCAGTAAAAGCTTAGGATTAAAACGAACGCAACTTAGAAGGGCCCTCCACGACCCAGACGAACCCAATTCACTGGTCCTCGAACGCCCTCCAACCATTCCGGAACACGAAAGAATGAAAATGAATCCTAATGACATAAAAGTTGCTGTTGTAGTTGATCCAGTACTTGGAAACATACTGAGGCCGCACCAGAGAGAAGGAGTAAAGTTCATGTATGACTGCGTTACTGGGAAACAAATAGAAAATGCATATGGATGTATAATGGCTGATGAAATGGGTTTAGGTAAAACCTTGCAGTGCATAACTTTACTGTGGACCTTACTGCGTCAAGGGCCAGACTGTAAACCAACAATATGTAAAGCCATAATAGTATGTCCCAGCAGTTTAGTAAAAAATTGGTACAATGAAATACATAAGTGGCTGTCGCAAAGGATAAATGCTTTAGCTATGGATGGGGGTTCAAAAGCTGAAGTAACTTTGAAACTACAGCAATTTATGAACACATATTCTGCGACTCGAGTTGCCACACCAGTCTTAATCATATCATATGAAACTTTCAGGATATACTCAAATATATTGCACTCTTCTGAAGTAGGTTTAGTCCTGTGTGATGAAGGGCATAGGTTGAAGAACAGCGAAAATCAGACATACCAAGCATTAATGGGTTTGAAGGCTAAAAGGAGAATATTAATCTCAGGTACACCAATCCAGAATGATTTAACTGAATATTTTAGTTTAGTACATTTTGTTAATGAAGGAATATTAGGGACTGCGCATGAGTTCAAAAAGAGATATGAAAATCCTATTTTGAAGGGACAAGATGCAATGGCAAGTCAACCTGAGAGAGAAAAAGCCCAGGAGTGCCTGCAAACATTAACTTCAATTGTGAACAAGTGCATGATCCGAAGAACTAGTGGTCTATTAACTAAATATTTGCCAGTTAAATTTGAGCAAGTTATTTGTGTAAAAATGACTCCACTACAGACTCAAATTTACAAGAATTTCATAAATTCTGATGCAATTCGTAACAAGTTTACAGGCACTGGAGAAAAAAGCAATACGCTAAGTGCTTTGTCCAGCATTACATCTTTGAAGAAGCTCTGTAACCACCCAGACTTGATCTATGAAAAGATTATAGAAAGAACAGAAGGTTTCGAAAAAGCAAAAGACTATCTCCCAAGTAACTATGATATAAAAGATGTAAGACCAGAATATTCAGGCAAGTTAATGATCTTAGACTGCATACTGGCAAATCTTAAAATGAATACAGATGATAAAATTGTGCTCGTATCAAATTATACTCAGACATTAGATTTATTTGAGAAATTATGTCGAAAACGTACATATCAATATGTAAGATTGGATGGTTCAATGACAATAAAAAAGAGAGCCAAGGTGGTGGAAAACTTTAACAATAAAGACTCCAAAGAGTGGATTTTCATGCTAAGTTCCAAAGCTGGTGGTTGTGGCTTGAATCTCATTGGAGCCAACAGGCTAATCATGTTTGACCCTGATTGGAATCCTGCAAATGATGAGCAGGCGATGGCACGGGTATGGCGCGATGGGCAAAAAAAACCATGCTATATTTACAGACTTTTGGCTACTGGAACCATTGAAGAAAAAATATTCCAAAGGCAAGCACACAAAAAAGCACTCAGCGAGACAGTGGTTGACCAAAATGAGGAGTCTCTAAGACATTTCACAGCAGATGATTTGAAAGACCTATTCCGTTTGGAGGAGAACACACTATCGGACACTCATAGTAAGTTTAAATGTAAAAGGTGTGTAAACAATATTCAAGTTACACTACCACCTGAAAATTCTGATTGCACATCTGATATTTCCAATTGGTACCACTGTGCAGACAAGAAAAACATAGCCGACATGGTCTTGAAGCAATGCTGGGACGTTGCAAAAAGTATATCCTTTGTTTTCCATCATCGGTCCGCAAAAACAGAGGCTAAGGAGATAACTATAGAAGATAAAGAAAATATACAAGTAAGTAAAAAAAGAAGAATCATGGATGATGAAGATTACTCTGAACCAGATGACAGTGCTGATGAAGATTATTCATGA
Protein
MRRSRAPSQIGSGESVFKSPLLDSAKRKKRECTRIPLAQKTPSQTLPSSDHENIIRQILSKPFKVPISNYVSSYCSKSLGLKRTQLRRALHDPDEPNSLVLERPPTIPEHERMKMNPNDIKVAVVVDPVLGNILRPHQREGVKFMYDCVTGKQIENAYGCIMADEMGLGKTLQCITLLWTLLRQGPDCKPTICKAIIVCPSSLVKNWYNEIHKWLSQRINALAMDGGSKAEVTLKLQQFMNTYSATRVATPVLIISYETFRIYSNILHSSEVGLVLCDEGHRLKNSENQTYQALMGLKAKRRILISGTPIQNDLTEYFSLVHFVNEGILGTAHEFKKRYENPILKGQDAMASQPEREKAQECLQTLTSIVNKCMIRRTSGLLTKYLPVKFEQVICVKMTPLQTQIYKNFINSDAIRNKFTGTGEKSNTLSALSSITSLKKLCNHPDLIYEKIIERTEGFEKAKDYLPSNYDIKDVRPEYSGKLMILDCILANLKMNTDDKIVLVSNYTQTLDLFEKLCRKRTYQYVRLDGSMTIKKRAKVVENFNNKDSKEWIFMLSSKAGGCGLNLIGANRLIMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLLATGTIEEKIFQRQAHKKALSETVVDQNEESLRHFTADDLKDLFRLEENTLSDTHSKFKCKRCVNNIQVTLPPENSDCTSDISNWYHCADKKNIADMVLKQCWDVAKSISFVFHHRSAKTEAKEITIEDKENIQVSKKRRIMDDEDYSEPDDSADEDYS

Summary

Description
Involved in mitotic DNA repair and meiotic recombination. Functions in the recombinational DNA repair pathway. Essential for interhomolog gene conversion (GC), but may have a less important role in intersister GC than spn-A/Rad51. In the presence of DNA, spn-A/Rad51 enhances the ATPase activity of okr/Rad54 (By similarity).
Subunit
Interacts (via N-terminus) with spn-A/Rad51.
Similarity
Belongs to the SNF2/RAD54 helicase family.
Keywords
ATP-binding   Cell cycle   Cell division   Complete proteome   DNA damage   DNA repair   DNA-binding   Helicase   Hydrolase   Meiosis   Mitosis   Nucleotide-binding   Nucleus   Phosphoprotein   Reference proteome  
Feature
chain  DNA repair and recombination protein RAD54-like
EC Number
3.6.4.-
EMBL
BABH01004144    RSAL01000093    RVE47910.1    NWSH01000207    PCG78404.1    KQ460651    + More
KPJ13057.1    KQ459582    KPI99021.1    KQ459058    KPJ03868.1    ODYU01005031    SOQ45510.1    AGBW02007651    OWR55094.1    JTDY01001478    KOB73773.1    CH477247    EAT46147.1    DS231942    EDS28209.1    GFDL01011742    JAV23303.1    AJWK01001599    UFQS01000376    UFQT01000376    SSX03350.1    SSX23716.1    AXCM01003320    AXCN02000632    AAAB01008944    EAL40287.3    APCN01000649    AAZX01001562    NNAY01001822    OXU22814.1    ADMH02000240    ETN67272.1    KK107019    QOIP01000007    EZA62787.1    RLU20477.1    DS235845    EEB18393.1    MF433009    ATL75360.1    ADTU01027231    KQ976433    KYM87345.1    KK852812    KDR15866.1    GL888207    EGI65099.1    GBYB01006780    GBYB01006781    GBYB01013834    GBYB01013835    JAG76547.1    JAG76548.1    JAG83601.1    JAG83602.1    KQ980673    KYN14605.1    GL441481    EFN64762.1    KQ971345    EFA05805.2    KQ434948    KZC12470.1    LBMM01001801    KMQ95722.1    GEZM01052529    JAV74455.1    NEVH01013208    PNF29788.1    JRES01001249    KNC24241.1    KQ414785    KOC60978.1    GL449414    EFN82771.1    KQ435710    KOX79922.1    GEDC01016556    JAS20742.1    KZ288271    PBC29777.1    GBXI01011959    JAD02333.1    GECU01013619    JAS94087.1    CH933807    EDW12294.1    RQTK01000254    RUS83190.1    CCAG010002366    GEZM01052530    JAV74454.1    GAMC01010999    JAB95556.1    APGK01050691    APGK01050692    APGK01050693    KB741174    KB631692    ENN73266.1    ERL85409.1    CH940654    EDW57784.1    GDHF01005830    JAI46484.1    GAKP01002945    JAC56007.1    CH963857    EDW76660.1    CP012523    ALC38339.1    RJVU01051519    ROL41636.1    CH916368    EDW03166.1    CVRI01000054    CRL00768.1    GDIP01146531    JAJ76871.1    GDIP01046289    JAM57426.1    GDIP01103274    JAM00441.1    GDIQ01035023    JAN59714.1    GDIP01137342    JAL66372.1    GDIQ01212732    JAK38993.1    GDIQ01245429    JAK06296.1    GDIP01108482    JAL95232.1    GDIQ01239987    JAK11738.1    GDIQ01237185    JAK14540.1    GDIP01059783    JAM43932.1    GDIQ01038465    JAN56272.1    GCES01147081    JAQ39241.1    KB203019    ESO86661.1    BEZZ01000151    GCC27090.1    GL732569    EFX76308.1    AAGJ04156460    AAGJ04156461    AAGJ04156462    AAEX03009776   
Pfam
PF00176   SNF2_N        + More
PF00271   Helicase_C
PF13855   LRR_8
PF08658   Rad54_N
PF00642   zf-CCCH
Interpro
IPR038718   SNF2-like_sf        + More
IPR027417   P-loop_NTPase       
IPR000330   SNF2_N       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR032675   LRR_dom_sf       
IPR005146   B3/B4_tRNA-bd       
IPR020825   Phe-tRNA_synthase_B3/B4       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR013967   Rad54_N       
IPR036855   Znf_CCCH_sf       
IPR000571   Znf_CCCH       
SUPFAM
SSF52540   SSF52540        + More
SSF90229   SSF90229       
Gene 3D
PDB
1Z3I     E-value=0,     Score=2247

Ontologies

Topology

Subcellular location
Nucleus  
Length:
765
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02882
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00144
outside
1  -  765
 
 

Population Genetic Test Statistics

Pi
242.098223
Theta
202.882808
Tajima's D
-0.677826
CLR
26.615963
CSRT
0.2012399380031
Interpretation
Uncertain
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