Gene

KWMTBOMO09448

Annotation

endonuclease-reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr16(+):1417301-1418740      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.716 Nuclear   Reliability : 1.171

CDS

ATGCAGTGTGAAGTTTTCACTTTGTTTATCGACTTCGAAAAGGCCTTTGACTGTGTCAGTTGGTCCAGCATTTGGACTGTTTTGAAGAAAAAAGGCGTGCCCGACAAGCTCATAAATGTCATAAAAGCGCTTTACTATGGATCGTCGTGTAGAGTGCTCCACAGGGGAAAACTTACGGATAATATCGTGGTCAATGCAGGCGTCAAGCTAGGTTGCTTGCTGTCTCCCCTGCTGTTTATAATGGTGCTTGATGATGTGATGCGTAGAGTCACCTGTAAATGTCGACAAGGACTGCCTTGGACCACGGATGAAGATCTAGAGGACATCGACTTTGCTGATGACATTTGCCTCCTAGCAACCTATCGGCAGCAGCTACAAAACAAAGCAGATGATCTAGTAAATGAAGCTGAAAAAGTAGGGCAGCGTATTAATTTTACAAAAACAAAAGAAATGCGCATAAATACCACCGATTCGGCTCCTATGTTGATCAAAGGGAGGCACATCGAGCAGGTGGGAAGCTTCTGTTACCTGGGCAGCATTGTGGACGATAGGGGAGGCACCGAGGCAGACATTGCGGCTCGTATAAATAAAGCTAGAACCGCGTTTAGTCAACTTAGAGTGTACGACTGGGAAGAAGAATGA

Protein

MQCEVFTLFIDFEKAFDCVSWSSIWTVLKKKGVPDKLINVIKALYYGSSCRVLHRGKLTDNIVVNAGVKLGCLLSPLLFIMVLDDVMRRVTCKCRQGLPWTTDEDLEDIDFADDICLLATYRQQLQNKADDLVNEAEKVGQRINFTKTKEMRINTTDSAPMLIKGRHIEQVGSFCYLGSIVDDRGGTEADIAARINKARTAFSQLRVYDWEEE

Uniprot

D7F173   A0A183MWW8   A0A0R3QDD8   A0A3S0ZUP8   A0A183MHC4   A0A3S1HYS8   + More
A0A183MC13   A0A3S1BG01   A0A183N2R5   A0A433TL31   A0A0A9X4P7   A0A183LBK3   A0A3P8D266   A0A183M331   A0A183M232   A0A3P7ZFG0   A0A183MMK9   A0A183MZK2   A0A183N3P3   A0A2V3ZRE9   A0A183MX86   A0A3S0Z3I7   A0A2B4S265   A0A183MNJ5   A0A3S3QXP3   A0A2B4SQ50   A0A183LTI8   A0A183LM32   A0A183N708   A0A183LX56   A0A0K8S889   A0A183LGS5   A0A183MVE0   A0A183LRB6   A0A183MQD9   A0A2B4R8E3   A0A2B4RLZ4   A0A2B4SLP8   A0A183JSM8   A0A3P7Z4U3   A0A183LZE9   A0A183LB65   A0A183KE93   A0A183L9Q3   A0A183N898   A0A183LR54   A0A183MHT6   A0A183MS45   A0A183LZ84   Q4QQE8   A0A183M3D9   A0A3P8A321   A0A034VWX2   A0A3P8A497   A0A183M3P4   A0A3P8DHF9   A0A183MM50   A0A183N253   A0A183JFK0   A0A3P7X8C1   A0A183LR43   A0A183LU01   A0A183MV72   A0A183K7E3   A0A183M158   A0A183LDD6   A0A3S1BKK2   A0A183LJV0   A0A183N9U5   A0A183MVI4   A0A183N4Y4   A0A146MF87   A0A183LFM6   A0A183NAL9   A0A183K757   A0A183MMN2   A0A3P8AM30   A0A183LL57   A0A183JWU1   A0A183JNE7   A0A183MT15   A0A183NCY3   A0A183L0L7   C7C207   A0A3P8ANK8   A0A183MBC4   A0A2G8JGP4   A0A183KVH6   A0A183REU8   A0A183LTM2   A0A3P8DCC0   A0A183LZL5   A0A183N0Z2   A0A183NC06   A0A3P8BZD5   A0A3P7Z778   A0A183MTP0   A0A183LZY7   A0A430Q2J0   A0A183JUK2  

Pubmed

20470440    25401762    15939396    25348373    26823975    29023486    + More

EMBL

FJ265558    ADI61826.1    UZAI01018356    VDP36181.1    UZAG01003391    VDO15268.1    + More
RQTK01000143    RUS86294.1    UZAI01016936    VDP18325.1    RQTK01000073    RUS88821.1    UZAI01010482    VDP07162.1    RQTK01000111    RUS87436.1    UZAI01019243    VDP43876.1    RQTK01000294    RUS82268.1    GBHO01029816    JAG13788.1    UZAI01000248    VDO50445.1    UZAI01005413    VDO90435.1    UZAI01005079    VDO89009.1    UZAI01017336    VDP23465.1    UZAI01018722    VDP39714.1    UZAI01019414    VDP45148.1    QFLI01000039    PXX94708.1    UZAI01018402    VDP36679.1    RQTK01002506    RUS68506.1    LSMT01000205    PFX23506.1    UZAI01017422    VDP24398.1    RJLM01000070    RWX52695.1    LSMT01000038    PFX31239.1    UZAI01002802    VDO74779.1    UZAI01001589    VDO63472.1    UZAI01020143    VDP49861.1    UZAI01003626    VDO81152.1    GBRD01016432    JAG49394.1    UZAI01000820    VDO56728.1    UZAI01018149    VDP33853.1    UZAI01002345    VDO70624.1    UZAI01017598    VDP27129.1    LSMT01001244    PFX12648.1    LSMT01000478    PFX17357.1    LSMT01000057    PFX30003.1    UZAK01010049    VDO97832.1    UZAI01004245    VDO85109.1    UZAI01000214    VDO50020.1    UZAK01035794    VDP52259.1    UZAI01000099    VDO48517.1    UZAI01020464    VDP51636.1    UZAI01002313    VDO70304.1    UZAI01016968    VDP18734.1    UZAI01017784    VDP29476.1    UZAI01004190    VDO84823.1    BN000794    CAJ00236.1    UZAI01005521    VDO90887.1    GAKP01012607    JAC46345.1    UZAI01005620    VDO91334.1    UZAI01019135    VDP43071.1    UZAI01017296    VDP23041.1    UZAK01001189    VDO67876.1    UZAI01002306    VDO70240.1    UZAI01002900    VDO75495.1    UZAI01018128    VDP33575.1    UZAK01034077    VDP42148.1    UZAI01004764    VDO87718.1    UZAI01000431    VDO52959.1    RQTK01000034    RUS90383.1    UZAI01001250    VDO59943.1    UZAI01020922    VDP53795.1    UZAI01018167    VDP34015.1    UZAI01019661    VDP46899.1    GDHC01000226    JAQ18403.1    UZAI01000669    VDO55444.1    UZAI01021224    VDP54851.1    UZAK01034022    VDP41775.1    UZAI01017342    VDP23549.1    UZAI01001449    VDO62065.1    UZAK01032269    VDP25249.1    UZAK01005401    VDO87479.1    UZAI01017885    VDP30694.1    UZAI01022875    VDP58707.1    UZAK01045225    VDP73636.1    FN356221    CAX83710.1    UZAI01009733    VDP05700.1    MRZV01002040    PIK34921.1    UZAK01041924    VDP67956.1    UZAI01002819    VDO74931.1    UZAI01018929    VDP41391.1    UZAI01021877    VDP56732.1    UZAI01017961    VDP31522.1    UZAI01004395    VDO86019.1    QMKO01003083    RTG81912.1    UZAK01013942    VDP03592.1   

Proteomes

UP000050790    UP000277204    UP000050602    UP000271974    UP000248079    UP000225706    + More
UP000287563    UP000050789    UP000230750    UP000050792   

PRIDE

D7F173   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos
PF14529   Exo_endo_phos_2
PF00069   Pkinase

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR027124   Swc5/CFDP2       
IPR005135   Endo/exonuclease/phosphatase       
IPR000719   Prot_kinase_dom       
IPR017441   Protein_kinase_ATP_BS       
IPR011009   Kinase-like_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF56112   SSF56112       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F173   A0A183MWW8   A0A0R3QDD8   A0A3S0ZUP8   A0A183MHC4   A0A3S1HYS8   + More
A0A183MC13   A0A3S1BG01   A0A183N2R5   A0A433TL31   A0A0A9X4P7   A0A183LBK3   A0A3P8D266   A0A183M331   A0A183M232   A0A3P7ZFG0   A0A183MMK9   A0A183MZK2   A0A183N3P3   A0A2V3ZRE9   A0A183MX86   A0A3S0Z3I7   A0A2B4S265   A0A183MNJ5   A0A3S3QXP3   A0A2B4SQ50   A0A183LTI8   A0A183LM32   A0A183N708   A0A183LX56   A0A0K8S889   A0A183LGS5   A0A183MVE0   A0A183LRB6   A0A183MQD9   A0A2B4R8E3   A0A2B4RLZ4   A0A2B4SLP8   A0A183JSM8   A0A3P7Z4U3   A0A183LZE9   A0A183LB65   A0A183KE93   A0A183L9Q3   A0A183N898   A0A183LR54   A0A183MHT6   A0A183MS45   A0A183LZ84   Q4QQE8   A0A183M3D9   A0A3P8A321   A0A034VWX2   A0A3P8A497   A0A183M3P4   A0A3P8DHF9   A0A183MM50   A0A183N253   A0A183JFK0   A0A3P7X8C1   A0A183LR43   A0A183LU01   A0A183MV72   A0A183K7E3   A0A183M158   A0A183LDD6   A0A3S1BKK2   A0A183LJV0   A0A183N9U5   A0A183MVI4   A0A183N4Y4   A0A146MF87   A0A183LFM6   A0A183NAL9   A0A183K757   A0A183MMN2   A0A3P8AM30   A0A183LL57   A0A183JWU1   A0A183JNE7   A0A183MT15   A0A183NCY3   A0A183L0L7   C7C207   A0A3P8ANK8   A0A183MBC4   A0A2G8JGP4   A0A183KVH6   A0A183REU8   A0A183LTM2   A0A3P8DCC0   A0A183LZL5   A0A183N0Z2   A0A183NC06   A0A3P8BZD5   A0A3P7Z778   A0A183MTP0   A0A183LZY7   A0A430Q2J0   A0A183JUK2  

KEGG

100286764    no KO assigned | (RefSeq) Obp6, fmxg2I3; odorant-binding protein 6

GO

GO:0004519   GO:0003964   GO:0004672   GO:0005524  

PANTHER

PTHR23227  

Length:

213

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

13.3804

Exp number, first 60 AAs:

0.10752

Total prob of N-in:

0.37302

outside

1  -  213

 

 

Pi

314.696746

Theta

181.487104

Tajima's D

2.584435

CLR

0.018603

CSRT

0.953752312384381

Interpretation

Uncertain