SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09442  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013076
Annotation
PREDICTED:_ribosomal_protein_L6_isoform_X1_[Bombyx_mori]
Full name
60S ribosomal protein L6      
Location in the cell
Cytoplasmic   Reliability : 1.452 Mitochondrial   Reliability : 1.684 Nuclear   Reliability : 1.591
 

Sequence

CDS
ATGGCTCCAACACAGCCTAAAGCGGCGGCCAAGCCTGCTGCCGCACCTGCAGGTGCGGTGACTAAGAAAAAATCTACGAAAAAACCCAGGAACTATGATCTGGGCAACGGAGTGATGCGTTTCTCCAAATCCAAGATGTTCCACAAGAAGGCTAAATACAAGTTCATTGGCAAAAAGAACCCTAAGCCTGAGAAGCCCAAGAAGCTGACTGTTGTTGTAAAGCAGATTGGAGGTGAGAAGAATGGGGGAACCAGAACAGTACCCCTCAAACGTAGGAAGTCCTTCTACCCCACTCAGGAGAAAATCCGTGCCTCATCTGGTGGCCGTCCATTCAGCAAGCATGTACGCAGGATCCGACCCAACCTGAAGATAGGAACTGTTTGCATTCTCCTCGCTGGTAGACATGCAGGCAAGAGGGTTGTACTTGTTGGAATTCTGCCCAGCGGTCTGCTTTTAGTTACTGGACCTTTTGCATTCAATTCGTGCCCGCTACGCCGTATTCCTCAGCGCTATGTGATCGGCACCTCCACCAGAATTTCACTCGGCAACTTCAAACTGCCAAAACACTTCAATGATGATTACTTCAAGAAGAATAAGAAGTGCGTCAAACGTACAGTCAAACGCAAAGAGGGTGATGACATCTTTGCCACAAAAAAAGAGAAATACGTTCCATCTGAGCAGCGCAAAACCGATCAGAAGACAGTCGATGAGGCTGTGATCAAAGCCATTGGAGCCCGACCCGACAAGAAGGTGCTCCGCGGATACCTCAAGGCGGCCTTCGGACTCCGCTCCAGCCAATATCCCCATCGGCTGCGCTTCTAA
Protein
MAPTQPKAAAKPAAAPAGAVTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF

Summary

Similarity
Belongs to the eukaryotic ribosomal protein eL6 family.
EMBL
AY769273    AAV34815.1    BABH01004154    GU084278    ACY95311.1    KQ460878    + More
KPJ11658.1    GBRD01001220    JAG64601.1    NWSH01000207    PCG78417.1    AK401052    KQ459582    BAM17674.1    KPI99013.1    AK402481    BAM19103.1    ODYU01000538    SOQ35464.1    AGBW02007651    OWR55103.1    RSAL01000093    RVE47916.1    HQ424707    ADT80651.1    GDQN01004435    JAT86619.1    JF264999    AEL28830.1    EU259813    ABX55884.1    MG846945    AXY94797.1    JF777396    AEU11741.1    JF777402    AEU11747.1    JTDY01000502    KOB76877.1    JF777400    AEU11745.1    JF777401    AEU11746.1    JF777395    AEU11740.1    JF777398    AEU11743.1    JF777406    AEU11751.1    JF777404    AEU11749.1    JF777405    AEU11750.1    JF777407    AEU11752.1    JF777408    AEU11753.1    JF777397    AEU11742.1    JF777403    AEU11748.1    JF777399    AEU11744.1    NNAY01001458    OXU23907.1    KT270586    ALR99800.1    KQ971348    EFA05803.1    GBYB01010328    JAG80095.1    APGK01055224    KB741261    ENN71617.1    NEVH01021221    PNF19751.1    KB629993    KB631841    KB632254    ERL83321.1    ERL86616.1    ERL90605.1    QOIP01000003    RLU24867.1    GU120407    ACY71257.1    KQ977329    KYN03517.1    AM048994    CAJ17232.1    KY285056    ATP16159.1    KC740667    AGM32491.1    GL888120    EGI67014.1    GL771866    EFZ09134.1    KQ983089    KYQ47545.1    ADTU01004533    FX985625    BBF97956.1    KQ976444    KYM86234.1    KQ979808    KYN19061.1    KQ981276    KYN43535.1    KK107161    EZA56618.1    GL451320    EFN79475.1    DS235171    EEB12946.1    JR041394    AEY59432.1    KQ435837    KOX71471.1    GEDC01019166    JAS18132.1    GL439543    EFN67108.1    AY961550    AAX62452.1    KK852445    KDR23771.1    LBMM01010052    KMQ87700.1    LJIG01009059    KRT83837.1    GANO01003288    JAB56583.1    DS232337    EDS40273.1    KQ434844    KZC08127.1    GFDL01011189    JAV23856.1    KQ767320    OAD53410.1    AK417064    BAN20279.1    PYGN01000219    PSN50900.1    GFDG01000581    JAV18218.1    KC507328    AHB12451.1    GBXI01013933    JAD00359.1    GDKW01000902    JAI55693.1    ACPB03000489    GAHY01000591    JAA76919.1    EZ048877    ACN69169.1    GEMB01000171    JAS02942.1    GECZ01012344    JAS57425.1    GDHF01024833    JAI27481.1    GEBQ01010754    JAT29223.1    CH902623    EDV30381.2    GAKP01015603    JAC43349.1    GBYB01002234    JAG72001.1    KZ288254    PBC30889.1    AJWK01014063    CH477490    EAT40054.1    JXUM01146237    KQ570135    KXJ68449.1    GBGD01002432    JAC86457.1    GAPW01003139    JAC10459.1    CH964232    EDW80794.2    CH933806    EDW14321.2    CH940650    EDW67412.2    GECU01034416    JAS73290.1    GECL01003763    JAP02361.1    GAMC01000689    JAC05867.1    CM000160    EDW99235.2   
Pfam
PF01159   Ribosomal_L6e        + More
PF03868   Ribosomal_L6e_N
PF14796   AP3B1_C
PF01602   Adaptin_N
Interpro
IPR014722   Rib_L2_dom2        + More
IPR005568   Ribosomal_L6_N       
IPR000915   60S_ribosomal_L6E       
IPR008991   Translation_prot_SH3-like_sf       
IPR041997   KOW_RPL6       
IPR002553   Clathrin/coatomer_adapt-like_N       
IPR029390   AP3B_C       
IPR011989   ARM-like       
IPR026739   AP_beta       
IPR016024   ARM-type_fold       
IPR026740   AP3_beta       
SUPFAM
SSF50104   SSF50104        + More
SSF48371   SSF48371       
Gene 3D
PDB
4V6W     E-value=1.52043e-50,     Score=502

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
16.83129
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.47382
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
25.639899
Theta
26.83475
Tajima's D
-0.550477
CLR
0.939307
CSRT
0.232188390580471
Interpretation
Uncertain
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