Gene

KWMTBOMO09439  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013077

Annotation

PREDICTED:_TBC1_domain_family_member_22B_[Papilio_xuthus]

Location

Bomo_Chr16(-):1252240-1265120      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.646 Nuclear   Reliability : 1.285

CDS

ATGGAAAATCACGAACCCGAACATGACAAGGGTTTGTTGTCTGACACGTTCTGGAGGACACCTCAGCGCGCTGTACCGGGGAGGCCTTACCAAAGGGTCATCCCAAACGAGGTTATGTCCGGGTCGTCGTATCAGCAATTCCAGGCGTCAGTCAACGACGCCTGGGATCTCGGCGACGACGAGATCATCTCGGGGATAGCGGACACTAAAATATCGAAAAGTATATCGGAAACAGCAGCCTTGAACGTCATAAATTCCCACAGAAACAGCACTAAAAACGTAAACAGAAGTGACGTGAAGGTTGAGAGTGAAGTTAAGAGTAAAGAGGTGGTGGAAGTTAAGAAGAATGAGGGTCGGAAGGTCGGTGGTGGGTCGGGTATAAGGCAGTATCCGGGTCGGCCTCGCCCAGTGCGGCTATCAGCGCTCGCTTCACGCGAGGAGAGCAGTGAGTCTAAATTGGAGCGCTTCCAGCAGATACACGATAGCACAGTCGTCAACCTCGACGAACTCAAACAGATCAGCTGGTCTGGGATACCAGTTAAAGCTAGAGCTGTAACATGGAGGCTTCTGGCCGGCTACTTACCAGCTAATTCTGAACGTCGCGCAGACACACTTCAACGAAAACGTGCCGATTACAAACATCTAGTAAGACAATATTATGATGCAGAAAGAGACGATGATACTTACCGACAGATACATATTGATATACCAAGAATGAGCCCACTCGTAGCTCTGTTCCAACAGAACACTGTGCAGGTTATGTTCGAGAGGATCTTGTATATTTGGGCAATAAGACACCCAGCTTCCGGCTACGTCCAAGGCATTAATGACCTCGTGACGCCGTTCTTCATGGTGTTCCTCCAGGAGGCTGTTCCTGGCGAGGAGCTGGATAATTATCCTCTGGACAAGTTGACTGAAGAGAAGAGGGACATCATCGAGGCAGACTCGTTTTGGTGTCTCTCGAAATTCTTAGACAGCGTTCAGGATAACTATATTTTTGCACAGCTGGGAATACAATACAAGGTAAATCAATTGAAGGAGCTGATAAGACGCATCGATCTACCACTCCACGAGCATTTGCAGCAGCACGGTGTGGACTACCTCCAGTTCTCATTCCGCTGGATGAACAATCTCCTCACGAGAGAAATACCGTTAGCCTGTACCATTCGATTATGGGACACTTATCTTGCAGAATCCGACGAGTTCGCTACATTTCAACTCTACGTCTGTGCCGCTTTCCTGCTTCACTGGAGAGAGAGATTGATGCTGGAAAGAGATTTCCAAGGTCTAATGATATTGTTACAGAACGTACCAACACAAAATTGGACTGATTCAAATATAAGTGTACTAGTTGCAGAGGCGTATAGGCTTAAGTTTGCTTTTGCCGATGCCCCCAAACATCTGCAGAGCGGTAAAGCAGACAGGTGA

Protein

MENHEPEHDKGLLSDTFWRTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASVNDAWDLGDDEIISGIADTKISKSISETAALNVINSHRNSTKNVNRSDVKVESEVKSKEVVEVKKNEGRKVGGGSGIRQYPGRPRPVRLSALASREESSESKLERFQQIHDSTVVNLDELKQISWSGIPVKARAVTWRLLAGYLPANSERRADTLQRKRADYKHLVRQYYDAERDDDTYRQIHIDIPRMSPLVALFQQNTVQVMFERILYIWAIRHPASGYVQGINDLVTPFFMVFLQEAVPGEELDNYPLDKLTEEKRDIIEADSFWCLSKFLDSVQDNYIFAQLGIQYKVNQLKELIRRIDLPLHEHLQQHGVDYLQFSFRWMNNLLTREIPLACTIRLWDTYLAESDEFATFQLYVCAAFLLHWRERLMLERDFQGLMILLQNVPTQNWTDSNISVLVAEAYRLKFAFADAPKHLQSGKADR

Uniprot

H9JU65   A0A2A4K3R3   A0A437BC27   A0A194R712   A0A194Q0C7   A0A212FMY6   + More
A0A2J7RSU5   A0A026W1P9   A0A1B6D9K2   K7IXR5   A0A0C9RC24   A0A3L8D678   A0A182K0F4   Q7Q9Y8   A0A182SZ38   A0A232EIQ5   A0A182XIG3   A0A182RE18   A0A1W4WE70   A0A088AUX0   A0A1W4WP62   A0A2H1W740   A0A2J7RSV6   A0A182H9N3   A0A1Y1NF45   A0A2A3E645   A0A195D1Y1   A0A182N9X4   A0A336M303   A0A336K258   B4PQA6   A0A3B0JME3   A0A182GG72   A0A0K8TMD8   A0A1W4VY72   B4R148   B4IKL1   Q95RC5   A0A1Q3FAN7   A0A1Q3FCU9   B3P2Y4   B3M2W3   A0A1Q3FD89   Q296V3   B4KDM0   A0A1L8DVM4   A0A1L8DW72   A0A0M4EDB5   J9JT79   A0A195F3Q6   E9IKP8   A0A151WXX4   B4JFJ1   A0A158NZQ4   A0A151I3R1   A0A0M9A0Q8   A0A151IXW8   D6W7S7   E2AAW3   A0A154PMU2   A0A2M4BNZ7   A0A2M4AHS6   U4TX30   A0A2M3Z7H4   W8BWT6   A0A310SVT0   B4LWV2   A0A2M4BJ23   W5JIL0   N6U6L5   A0A1J1I1V2   A0A182PHW3   A0A1Y9GL57   A0A1S4GL92   A0A0P8YND2   A0A182Y8Q4   E0VAT9   Q16QC4   A0A034W8K0   B4NH53   A0A0K8V520   A0A084WTY0   A0A182VEG5   A0A1S4FSU4   A0A1A9W9E3   A0A182KZH5   A0A0L7QLA4   E2C0B1   F4WRJ9   A0A182QNE4   T1PHV4   A0A165A4Z5   A0A0P5Z6F9   A0A2R5LCT5   A0A182W3I4  

Pubmed

19121390    26354079    22118469    24508170    20075255    30249741    + More
12364791    28648823    26483478    28004739    17994087    17550304    26369729    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    21282665    21347285    18362917    19820115    20798317    23537049    24495485    20920257    23761445    25244985    20566863    17510324    25348373    24438588    20966253    21719571   

EMBL

BABH01004154    BABH01004155    NWSH01000207    PCG78403.1    RSAL01000093    RVE47918.1    + More
KQ460878    KPJ11656.1    KQ459582    KPI99011.1    AGBW02007651    OWR55105.1    NEVH01000250    PNF43906.1    KK107488    EZA49995.1    GEDC01014956    JAS22342.1    GBYB01005805    JAG75572.1    QOIP01000012    RLU15965.1    AAAB01008898    EAA09194.4    NNAY01004198    OXU18212.1    ODYU01006755    SOQ48890.1    PNF43911.1    JXUM01121255    JXUM01121256    KQ566479    KXJ70100.1    GEZM01003859    JAV96522.1    KZ288356    PBC27178.1    KQ976948    KYN06913.1    UFQT01000478    SSX24646.1    UFQS01000059    UFQT01000059    SSW98769.1    SSX19155.1    CM000160    EDW96215.1    OUUW01000007    SPP83405.1    JXUM01011362    JXUM01011363    KQ560329    KXJ83008.1    GDAI01002285    JAI15318.1    CM000364    EDX12135.1    CH480853    EDW51615.1    AE014297    AY061479    AAF55847.2    AAL29027.1    GFDL01010438    JAV24607.1    GFDL01009640    JAV25405.1    CH954181    EDV48298.1    CH902617    EDV43493.1    GFDL01009491    JAV25554.1    CM000070    EAL28354.2    CH933806    EDW13854.1    GFDF01003615    JAV10469.1    GFDF01003589    JAV10495.1    CP012526    ALC45766.1    ABLF02027997    KQ981856    KYN34714.1    GL764026    EFZ18742.1    KQ982656    KYQ52728.1    CH916369    EDV93472.1    ADTU01004890    KQ976474    KYM83952.1    KQ435794    KOX73996.1    KQ980791    KYN13146.1    KQ971307    EFA11341.1    GL438191    EFN69426.1    KQ434954    KZC12618.1    GGFJ01005658    MBW54799.1    GGFK01007009    MBW40330.1    KB631792    ERL86169.1    GGFM01003704    MBW24455.1    GAMC01012883    GAMC01012881    JAB93674.1    KQ759866    OAD62483.1    CH940650    EDW66673.2    GGFJ01003863    MBW53004.1    ADMH02001067    ETN64222.1    APGK01047183    KB741077    ENN74202.1    CVRI01000026    CRK92353.1    APCN01005402    KPU80289.1    DS235015    EEB10494.1    CH477752    EAT36604.1    GAKP01007918    GAKP01007917    JAC51034.1    CH964272    EDW84550.2    GDHF01018338    JAI33976.1    ATLV01026943    KE525420    KFB53674.1    KQ414934    KOC59339.1    GL451753    EFN78663.1    GL888291    EGI63144.1    AXCN02001202    KA648269    AFP62898.1    LRGB01000642    KZS17184.1    GDIP01060955    JAM42760.1    GGLE01003153    MBY07279.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000235965    UP000053097    UP000002358    UP000279307    UP000075881    UP000007062    UP000075901    UP000215335    UP000076407    UP000075900    UP000192223    UP000005203    UP000069940    UP000249989    UP000242457    UP000078542    UP000075884    UP000002282    UP000268350    UP000192221    UP000000304    UP000001292    UP000000803    UP000008711    UP000007801    UP000001819    UP000009192    UP000092553    UP000007819    UP000078541    UP000075809    UP000001070    UP000005205    UP000078540    UP000053105    UP000078492    UP000007266    UP000000311    UP000076502    UP000030742    UP000008792    UP000000673    UP000019118    UP000183832    UP000075885    UP000075840    UP000076408    UP000009046    UP000008820    UP000007798    UP000030765    UP000075903    UP000091820    UP000075882    UP000053825    UP000008237    UP000007755    UP000075886    UP000076858    UP000075920   

PRIDE

H9JU65    Q95RC5   

Pfam

PF00566   RabGAP-TBC        + More
PF02731   SKIP_SNW

Interpro

IPR000195   Rab-GTPase-TBC_dom        + More
IPR035969   Rab-GTPase_TBC_sf       
IPR017862   SKI-int_prot_SKIP       
IPR004015   SKI-int_prot_SKIP_SNW-dom       

SUPFAM

SSF47923   SSF47923       

ProteinModelPortal

H9JU65   A0A2A4K3R3   A0A437BC27   A0A194R712   A0A194Q0C7   A0A212FMY6   + More
A0A2J7RSU5   A0A026W1P9   A0A1B6D9K2   K7IXR5   A0A0C9RC24   A0A3L8D678   A0A182K0F4   Q7Q9Y8   A0A182SZ38   A0A232EIQ5   A0A182XIG3   A0A182RE18   A0A1W4WE70   A0A088AUX0   A0A1W4WP62   A0A2H1W740   A0A2J7RSV6   A0A182H9N3   A0A1Y1NF45   A0A2A3E645   A0A195D1Y1   A0A182N9X4   A0A336M303   A0A336K258   B4PQA6   A0A3B0JME3   A0A182GG72   A0A0K8TMD8   A0A1W4VY72   B4R148   B4IKL1   Q95RC5   A0A1Q3FAN7   A0A1Q3FCU9   B3P2Y4   B3M2W3   A0A1Q3FD89   Q296V3   B4KDM0   A0A1L8DVM4   A0A1L8DW72   A0A0M4EDB5   J9JT79   A0A195F3Q6   E9IKP8   A0A151WXX4   B4JFJ1   A0A158NZQ4   A0A151I3R1   A0A0M9A0Q8   A0A151IXW8   D6W7S7   E2AAW3   A0A154PMU2   A0A2M4BNZ7   A0A2M4AHS6   U4TX30   A0A2M3Z7H4   W8BWT6   A0A310SVT0   B4LWV2   A0A2M4BJ23   W5JIL0   N6U6L5   A0A1J1I1V2   A0A182PHW3   A0A1Y9GL57   A0A1S4GL92   A0A0P8YND2   A0A182Y8Q4   E0VAT9   Q16QC4   A0A034W8K0   B4NH53   A0A0K8V520   A0A084WTY0   A0A182VEG5   A0A1S4FSU4   A0A1A9W9E3   A0A182KZH5   A0A0L7QLA4   E2C0B1   F4WRJ9   A0A182QNE4   T1PHV4   A0A165A4Z5   A0A0P5Z6F9   A0A2R5LCT5   A0A182W3I4  

PDB

6D0S     E-value=7.08155e-112,     Score=1034

KEGG

101739463    K20360 TBC1 domain family member 2 | (RefSeq) TBC1 domain family member 22B

GO

GO:0017137   GO:0006886   GO:0005623   GO:0005096   GO:0090630   GO:0043087   GO:0005681   GO:0000398  

PANTHER

PTHR12096  

Length:

475

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0587800000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00478

outside

1  -  475

 

 

Pi

243.088428

Theta

193.304242

Tajima's D

1.231419

CLR

0.653369

CSRT

0.720613969301535

Interpretation

Uncertain