Silkworm Genome Informatics Database

Gene

KWMTBOMO09434 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012780

Annotation

PREDICTED:_succinyl-CoA_ligase_[ADP/GDP-forming]_subunit_alpha?_mitochondrial-like_[Amyelois_transitella]

Location

Bomo_Chr16(+):1170177-1181221 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.51

CDS

ATGTATTCTCTCGTGGGCTACGGAAGTGATGATGACGTAGAAACAGAACGAAGCGCTCCTCAACAATCCACGGTGGCAGCGGGCAGCCGTCGCCGGGAAGATGATACGAACTACGATGACGTCAACATGGACATGAGTGAGTTCAAAGATGGACTAAAACTCGGCAATGTACGATTTGCATCTGGCAACCCTTATGCTGAAACCAGAAAAAATTTGATCCTTACAAGTGAAACAAAAGTGATTGTTCAGGGTTTCACTGGAAAGCAGGGTACCTTCCACAGCCAACAAGCCCTTGACTATGGTACTAAAGTTGTTGGAGGAGTGTCACCAAAGAAGGCTGGTACAGAACATCTTGGTAAGCCTGTGTTTGGTACAGTCAAAGAGGCAAAGGCAGGCACAGGAGCAACTGCCTCTGTTATTTATGTACCTCCCCCTGGAGCTGCAGCAGCCATTCTAGAAGCTATTGAGGCTGAAATGCCCCTCATTGTGTGCATTACAGAAGGTGTGCCACAACATGATATGGTGCGAGTAAAACATGCCCTCTTGAGACAAAACAAGTCTAGACTGGTTGGTCCTAACTGTCCTGGTATCATTGCTCCCGAGAAGTGTAAAATTGGTATCATGCCAGCTGCAGTGCACAAACGTGGTTGCATCGGAGTTGTATCGCGTTCTGGGACATTGACCTATGAAGCCTGTCATCAGACTACTATTACTGGCTTAGGCCAAACTTTGTGTGTCGGTATTGGAGGGGATCCCTTCAACGGAACAGACTTCATTGACTGCTTAGAAGTTTTCCTCAAGGATCCTGAGACCAAGGGCATCATCCTCATTGGTGAAATTGGTGGAAATGCTGAAGAATTAGCATCAGAATATTTGACTCAGTACAATACTGGTCAAAAAGCGAAGCCTGTGGTGTCGTTTATCGCTGGTTTGACGGCTCCCCCGGGCCGACGAATGGGTCACGCCGGTGCCATCATTTCGGGCGGCAAAGGAGGCGCCATGGACAAAATTAAGGCTTTAGAAAAAGCTAATGACTCGCAGGGTGGGGAGTCGGAGCCCGAGCTGCCCCCAGTCGAGCCACGCTCATCGACGAACTCCAAAAGGGAAGAAAGACACAGTTCAAATGAGAGTCGCGAACGCGCGCGCTCCCGAGACAAGGACAGGGAGCGCGGGAGGGACAGAGACAGGGAGAGGGCGCGGCGCGACGGGCGGGGGGAGCGCGGGAGGGACAGATCAGAGAGAGACCGCCGACGCAGCCGCGACAGCTCGTCGAGGCGAGGCCTGCTGGGAGACAAGCCCGACGACAGTAAGGTGCCAGCCTTGATGGACCTGAAGCCGTTTGGCGGCACGTCGCCCCCGGGACACGACCTCAAGAGGTCGCACGACGCCAGGGACGCCGCCTCGCCCCGGTTCGTTGACCGCGACCGCCGCGACAAGGACCGCGAGAGGGAGAGGGAGAGAGAGAGGGACAGGCACAGCCGGAGGTCCGAGGAGAAGAGGTCAGGACAAAACATTTATACTCGATCGTTAACCAATTAA

Protein

MYSLVGYGSDDDVETERSAPQQSTVAAGSRRREDDTNYDDVNMDMSEFKDGLKLGNVRFASGNPYAETRKNLILTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGVSPKKAGTEHLGKPVFGTVKEAKAGTGATASVIYVPPPGAAAAILEAIEAEMPLIVCITEGVPQHDMVRVKHALLRQNKSRLVGPNCPGIIAPEKCKIGIMPAAVHKRGCIGVVSRSGTLTYEACHQTTITGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGNAEELASEYLTQYNTGQKAKPVVSFIAGLTAPPGRRMGHAGAIISGGKGGAMDKIKALEKANDSQGGESEPELPPVEPRSSTNSKREERHSSNESRERARSRDKDRERGRDRDRERARRDGRGERGRDRSERDRRRSRDSSSRRGLLGDKPDDSKVPALMDLKPFGGTSPPGHDLKRSHDARDAASPRFVDRDRRDKDRERERERERDRHSRRSEEKRSGQNIYTRSLTN

Uniprot

NA

ProteinModelPortal

NA

PDB

6G4Q E-value=1.2388e-95, Score=894

KEGG

101739881 K01899 succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] | (RefSeq) succinyl-CoA ligase [AD

PATHWAY

00020    Citrate cycle (TCA cycle) - Bombyx mori (domestic silkworm)
00640    Propanoate metabolism - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)
01200    Carbon metabolism - Bombyx mori (domestic silkworm)

GO

GO:0048037 GO:0003824 GO:0008152 GO:0015074 GO:0004672 GO:0005524 GO:0006468 GO:0006418 GO:0000049 GO:0016876

Length:

512

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01065

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00145

outside

1 - 512

Pi

344.086612

Theta

193.1069

Tajima's D

2.77469

CLR

0.240771

CSRT

0.967551622418879

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
27530593	KGCSEAASPPPASLNIVPTETDLRI	100.00	1e-09
28556443	AKPVVSFIAGLTAPPGR	100.00	1e-04
28556443	AKPVVSFIAGLTAPPGR	100.00	1e-04
28556443	AGTEHLGKPVFGTVK	100.00	1e-04
28556443	NDLTFLDLTVQQIEHLNK	100.00	1e-04
28556443	QGTFHSQQALDYGTK	100.00	4e-04
28556443	LVGPNCPGIIAPEK	100.00	4e-04
28556443	LVGPNCPGIIAPEK	100.00	4e-04
28556443	AGTEHLGKPVFGTVK	100.00	0.001
28556443	IAGLTAPPGR	100.00	0.001
28556443	QGTFHSQQALDYGTK	100.00	0.001
28556443	AGTEHLGKPVFGTVK	100.00	0.002
28556443	AKPVVSFIAGLTAPPGR	100.00	0.005
28556443	KNLILTSETK	100.00	0.005

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree