Gene

KWMTBOMO09427  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013080

Annotation

PREDICTED:_coronin-6_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr16(-):1015128-1043086      View in EpiBrowser

Full name

Coronin      

Location in the cell

Extracellular   Reliability : 1.185

CDS

ATGTCTTTTAGGGTGGTCCGCAGTTCGAAGTTCCGTCACGTATATGGCCAGGCGTTGAAACGCGAACAATGTTATGATAACATAAGAGTATCAAAAAGTTCATGGGACTCAACGTTTTGTGCGGTTAACCCTAAGTTCTTAGCCATAATCGTCGAGTCAGCCGGCGGAGGTGCCTTCATAGTACTGCCTCATAACAAGGTTGGCCGCATACCTGCAGACCATCCCCTGGTAGGAGGACACAAGGGACCGGTCCTGGACATCGCCTGGTGTCCGCACAACGACAACGTCATAGCGAGCGGCTCCGAGGACTGCGTCGTCAAAGTATGGCAGATCCCAGACGGAGGACTATCCCGGACGCTGACAGAGCCTGTGGTGGACCTAGTCTACCATCAGCGAAGAGTTGGACTAGTACTCTGGCATCCAACAGCGCAGAATGTACTCCTAACTGCTGGGTCTGATAACCAGATAGCGATATGGAACGTGGGCACGGGAGAGGTACTGATCACCTTGGACTGCCACCCCGACCTCATTTACTCCGCTTGCTGGAACTGGACCGGCTCCAAACTCCTCACCACCTGCAGGGACAAGAAGATCAGAATAATCGACCCTCGTAAAGGCGAGGTAGAGTCCGAAGCGATAGCCCACGAGGGCAGTAAGGCTTCTCGGGCCATCTTCCTCAAGCATGGACTGGTTTTCACAACCGGTTTCAGCCGCATGTCGGAGCGGCAGTACTCGCTGCGCACGCCGGACGCGCTGGCCGAGCCCATCGTGACGGTGGAGATCGACACCAGCAACGGCGTCATGTTCCCGCTCTACGACCCCGACACCAACCTCGTCTACCTCTGCGGGAAGGGGGACTCCGTCATCAGATACTTCGAGGTGACGCCGGAGCCTCCCTTCGTGCACTACATCAACACCTTCCAAACTCCGGACCCTCAGAGAGGTATAGGCATGATGCCGAAGCGCGGGTGTGACGTGGCCACCTGCGAGATCGCCAAGTTCTACCGGCTCAACAACTCCGGACTGTGCCAGCCGTTTTAA

Protein

MSFRVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPHNKVGRIPADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVYHQRRVGLVLWHPTAQNVLLTAGSDNQIAIWNVGTGEVLITLDCHPDLIYSACWNWTGSKLLTTCRDKKIRIIDPRKGEVESEAIAHEGSKASRAIFLKHGLVFTTGFSRMSERQYSLRTPDALAEPIVTVEIDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEVTPEPPFVHYINTFQTPDPQRGIGMMPKRGCDVATCEIAKFYRLNNSGLCQPF

Similarity

Belongs to the WD repeat coronin family.

Uniprot

A0A194Q1R4   A0A212FMB3   A0A1A9VN99   A0A1B0FKL5   A0A1B0FKH2   A0A1A9XXJ9   + More
A0A1B0AV02   A0A1J1IH65   A0A0L0BYI3   W8BEP7   A0A0K8UGI8   A0A1I8NSP2   T1PHJ9   A0A1I8NSN9   A0A034VC54   W8BJH2   A0A1I8M7S6   A0A0K8TX69   A0A034V9V0   A0A0A1X4M3   A0A0A1X502   D2A4Z2   B4KQK4   A0A2M4CPM3   A0A0Q9XI60   B4J9A3   A0A182FE44   A0A0Q9W085   B4ME45   A0A336KX46   A0A336LWF2   U5ETW4   A0A084W2Q8   A0A0J9R6N6   A0A0B4KEJ7   A0A1W4VFH8   A0A182JAW1   A0A0M5JA98   B3NAM0   B4QDR6   A0A0Q5WC66   Q7JVY0   A0A0R1DLQ6   B4P197   B4IMC9   A0A1W4V1W6   A0A1Q3G3C7   A0A023EV24   A0A3B0JKA2   A0A1Q3FXZ1   B4MX45   A0A0Q9WQK1   A0A182GDI3   A0A3B0J230   A0A0L7QSG9   Q292X3   B4GCA5   A0A0R3NST9   A0A2R7VY84   A0A2A3EGC1   V9IIZ7   A0A0N0U6V6   A0A087ZSK9   A0A310STW0   A0A1W4WGS8   Q17LF3   Q17LF4   A0A182RUY9   A0A023F5H9   A0A182Y2X7   A0A232EH34   A0A1I8JVP0   A0A182Q7K4   K7IZ25   A0A182ME56   A0A1B6DUE5   A0A182VLJ8   A0A182K6Y0   A0A182I233   Q7PIL2   A0A182NMH4   A0A154PHR8   A0A0P8Y4B7   B3MGQ1   A0A1B6EK65   A0A182PPA8   A0A182WMC7   A0A0B4KEU5   W5JK48   A0A1B6IJV8   A0A2J7Q1H7   A0A1B6JIG7   A0A195DYU4   A0A195F841   A0A3B0J270   E2B8P4   A0A067QRK9   A0A146LZJ6   E1ZX07   A0A0J7L0K7  

Pubmed

26354079    22118469    26108605    24495485    25315136    25348373    + More
25830018    18362917    19820115    17994087    24438588    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    15090595    17550304    24945155    26483478    15632085    23185243    17510324    25474469    25244985    28648823    20075255    12364791    14747013    17210077    20920257    23761445    20798317    24845553    26823975   

EMBL

KQ459582    KPI98934.1    AGBW02007653    OWR54885.1    CCAG010001788    JXJN01003849    + More
JXJN01003850    CVRI01000047    CRK97777.1    JRES01001157    KNC25098.1    GAMC01009408    JAB97147.1    GDHF01026626    JAI25688.1    KA647595    AFP62224.1    GAKP01018863    GAKP01018859    JAC40089.1    GAMC01009407    JAB97148.1    GDHF01033448    JAI18866.1    GAKP01018871    GAKP01018867    JAC40081.1    GBXI01008582    JAD05710.1    GBXI01007898    GBXI01005830    JAD06394.1    JAD08462.1    KQ971345    EFA05284.1    CH933808    EDW08173.1    GGFL01003102    MBW67280.1    KRG03985.1    CH916367    EDW02478.1    CH940662    KRF78538.1    EDW58810.1    UFQS01001136    UFQT01001136    SSX09178.1    SSX29088.1    UFQT01000244    SSX09177.1    SSX22304.1    GANO01002601    JAB57270.1    ATLV01019678    KE525277    KFB44502.1    CM002911    KMY91832.1    AE013599    AGB93278.1    CP012524    ALC41556.1    CH954177    EDV59774.1    CM000362    EDX05928.1    KMY91828.1    KQS70993.1    AY118560    AF467271    AAF57403.1    AAM49929.1    AAM74566.1    CM000157    KRJ98186.1    EDW89099.1    CH480969    EDW45609.1    GFDL01000735    JAV34310.1    GAPW01000741    JAC12857.1    OUUW01000001    SPP73051.1    GFDL01002611    JAV32434.1    CH963857    EDW76684.1    KRF98500.1    JXUM01009971    JXUM01009972    JXUM01009973    KQ560295    KXJ83210.1    SPP73052.1    KQ414756    KOC61598.1    CM000071    EAL24738.2    CH479181    EDW31423.1    KRT01510.1    KK854155    PTY12289.1    KZ288266    PBC30206.1    JR047649    AEY60471.1    KQ435718    KOX78958.1    KQ760505    OAD60071.1    CH477216    EAT47509.1    EAT47508.1    GBBI01002293    JAC16419.1    NNAY01004623    OXU17643.1    AXCN02000923    AXCM01006083    AXCM01006084    GEDC01008015    GEDC01006919    JAS29283.1    JAS30379.1    APCN01000109    AAAB01008960    EAA44106.4    KQ434912    KZC11401.1    CH902619    KPU76453.1    EDV36809.1    GECZ01031478    JAS38291.1    AGB93275.1    ADMH02001272    ETN63270.1    GECU01020499    JAS87207.1    NEVH01019409    PNF22436.1    GECU01008739    JAS98967.1    KQ980066    KYN17897.1    KQ981727    KYN36780.1    SPP73053.1    GL446361    EFN87950.1    KK853042    KDR12149.1    GDHC01006662    JAQ11967.1    GL434948    EFN74277.1    LBMM01001518    KMQ96156.1   

Proteomes

UP000053268    UP000007151    UP000078200    UP000092444    UP000092443    UP000092460    + More
UP000183832    UP000037069    UP000095300    UP000095301    UP000007266    UP000009192    UP000001070    UP000069272    UP000008792    UP000030765    UP000000803    UP000192221    UP000075880    UP000092553    UP000008711    UP000000304    UP000002282    UP000001292    UP000268350    UP000007798    UP000069940    UP000249989    UP000053825    UP000001819    UP000008744    UP000242457    UP000053105    UP000005203    UP000192223    UP000008820    UP000075900    UP000076408    UP000215335    UP000076407    UP000075886    UP000002358    UP000075883    UP000075903    UP000075881    UP000075840    UP000007062    UP000075884    UP000076502    UP000007801    UP000075885    UP000075920    UP000000673    UP000235965    UP000078492    UP000078541    UP000008237    UP000027135    UP000000311    UP000036403   

PRIDE

Q7JVY0   

Pfam

PF00400   WD40        + More
PF08953   DUF1899

Interpro

IPR019775   WD40_repeat_CS        + More
IPR015505   Coronin       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR015048   DUF1899       
IPR036322   WD40_repeat_dom_sf       
IPR027337   CORO6       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A194Q1R4   A0A212FMB3   A0A1A9VN99   A0A1B0FKL5   A0A1B0FKH2   A0A1A9XXJ9   + More
A0A1B0AV02   A0A1J1IH65   A0A0L0BYI3   W8BEP7   A0A0K8UGI8   A0A1I8NSP2   T1PHJ9   A0A1I8NSN9   A0A034VC54   W8BJH2   A0A1I8M7S6   A0A0K8TX69   A0A034V9V0   A0A0A1X4M3   A0A0A1X502   D2A4Z2   B4KQK4   A0A2M4CPM3   A0A0Q9XI60   B4J9A3   A0A182FE44   A0A0Q9W085   B4ME45   A0A336KX46   A0A336LWF2   U5ETW4   A0A084W2Q8   A0A0J9R6N6   A0A0B4KEJ7   A0A1W4VFH8   A0A182JAW1   A0A0M5JA98   B3NAM0   B4QDR6   A0A0Q5WC66   Q7JVY0   A0A0R1DLQ6   B4P197   B4IMC9   A0A1W4V1W6   A0A1Q3G3C7   A0A023EV24   A0A3B0JKA2   A0A1Q3FXZ1   B4MX45   A0A0Q9WQK1   A0A182GDI3   A0A3B0J230   A0A0L7QSG9   Q292X3   B4GCA5   A0A0R3NST9   A0A2R7VY84   A0A2A3EGC1   V9IIZ7   A0A0N0U6V6   A0A087ZSK9   A0A310STW0   A0A1W4WGS8   Q17LF3   Q17LF4   A0A182RUY9   A0A023F5H9   A0A182Y2X7   A0A232EH34   A0A1I8JVP0   A0A182Q7K4   K7IZ25   A0A182ME56   A0A1B6DUE5   A0A182VLJ8   A0A182K6Y0   A0A182I233   Q7PIL2   A0A182NMH4   A0A154PHR8   A0A0P8Y4B7   B3MGQ1   A0A1B6EK65   A0A182PPA8   A0A182WMC7   A0A0B4KEU5   W5JK48   A0A1B6IJV8   A0A2J7Q1H7   A0A1B6JIG7   A0A195DYU4   A0A195F841   A0A3B0J270   E2B8P4   A0A067QRK9   A0A146LZJ6   E1ZX07   A0A0J7L0K7  

PDB

2B4E     E-value=2.1286e-127,     Score=1166

KEGG

101745724    K13886 coronin-1B/1C/6 | (RefSeq) coronin-6

GO

GO:0051015   GO:0007015   GO:0007527   GO:0050832   GO:0016021   GO:0005515   GO:0005524   GO:0006508   GO:0015074   GO:0004672   GO:0006468   GO:0006418   GO:0000049   GO:0016876  

PANTHER

PTHR10856   PTHR10856:SF23  

Length:

346

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.37551

Exp number, first 60 AAs:

1.25473

Total prob of N-in:

0.08903

outside

1  -  346

 

 

Pi

225.167821

Theta

171.817946

Tajima's D

1.127228

CLR

0.499252

CSRT

0.697215139243038

Interpretation

Uncertain