Gene

KWMTBOMO09426  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013081

Annotation

PREDICTED:_coronin-6_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr16(-):1009888-1010736      View in EpiBrowser

Full name

Coronin      

Location in the cell

Nuclear   Reliability : 2.167

CDS

ATGCTATCGGCTAGGGGCTCCCTAACCAAACTACAGGAGCGCGCTTTGGTTGTGCAGGGCGGCTACGTGTCCGGTCGGGCTGCCACTCAGCTGCACGTCACCAAGAAGAACGCACTAGCCACCACCAAGGACAGAGACAAGGACCGCTCGCCGACACCCGCCGCCAAGCTTGACCGACACGCCGACAGCCACTCCGGCACGCCCGCCTCCGCCACGCCTCCGCCGGCGGTCAGCGCGGCCGTGGAGAAGCAGTTGTCAGATTTGGTTGACGAGATCCGAAAACTGAAATCGGTAATAGTAAAACAAGAGAACAGAATTCGCGCCCTCGAGGCGGTGATGAAGGCGTCTCCCCTCCCGCAACCCGCCTCGCCCCCGCCCTGCGCCGCGCCCCTCGTCCCCGACGCCACCAACCACGAAACCGACGGTATGGCACCGGACGAGGTATAG

Protein

MLSARGSLTKLQERALVVQGGYVSGRAATQLHVTKKNALATTKDRDKDRSPTPAAKLDRHADSHSGTPASATPPPAVSAAVEKQLSDLVDEIRKLKSVIVKQENRIRALEAVMKASPLPQPASPPPCAAPLVPDATNHETDGMAPDEV

Similarity

Belongs to the WD repeat coronin family.

Uniprot

H9JU69   A0A0L7LMF5   A0A2H1VT74   A0A3S2LA61   A0A1E1WEI7   A0A194RVY7   + More
A0A194Q1R4   A0A212FMB3   W8BEP7   A0A034VC54   A0A0K8UGI8   A0A0A1X4M3   A0A0L0BYI3   A0A1B0FKL5   A0A1I8NSN9   A0A1A9XXJ9   U5ETW4   A0A1L8E5K7   T1PHJ9   A0A336LWF2   A0A1Q3G3C7   A0A182GDI3   A0A023EV24   A0A1J1IH65   W5JK48   A0A182I233   Q17LF4   A0A1Q3FXZ1   A0A182RUY9   A0A182KPV1   A0A182ME56   B0W5C1  

Pubmed

19121390    26227816    26354079    22118469    24495485    25348373    + More
25830018    26108605    25315136    26483478    24945155    20920257    23761445    17510324    20966253   

EMBL

BABH01004175    JTDY01000595    KOB76539.1    ODYU01004311    SOQ44051.1    RSAL01000071    + More
RVE49102.1    GDQN01005773    JAT85281.1    KQ459700    KPJ20351.1    KQ459582    KPI98934.1    AGBW02007653    OWR54885.1    GAMC01009408    JAB97147.1    GAKP01018863    GAKP01018859    JAC40089.1    GDHF01026626    JAI25688.1    GBXI01008582    JAD05710.1    JRES01001157    KNC25098.1    CCAG010001788    GANO01002601    JAB57270.1    GFDF01000096    JAV13988.1    KA647595    AFP62224.1    UFQS01001136    UFQT01000244    UFQT01001136    SSX09177.1    SSX22304.1    GFDL01000735    JAV34310.1    JXUM01009971    JXUM01009972    JXUM01009973    KQ560295    KXJ83210.1    GAPW01000741    JAC12857.1    CVRI01000047    CRK97777.1    ADMH02001272    ETN63270.1    APCN01000109    CH477216    EAT47508.1    GFDL01002611    JAV32434.1    AXCM01006083    AXCM01006084    DS231842    EDS35241.1   

Proteomes

UP000005204    UP000037510    UP000283053    UP000053240    UP000053268    UP000007151    + More
UP000037069    UP000092444    UP000095300    UP000092443    UP000095301    UP000069940    UP000249989    UP000183832    UP000000673    UP000075840    UP000008820    UP000075900    UP000075882    UP000075883    UP000002320   

PRIDE

H9JU69   

Pfam

PF08953   DUF1899        + More
PF00400   WD40

Interpro

IPR027337   CORO6        + More
IPR015505   Coronin       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       
IPR015048   DUF1899       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JU69   A0A0L7LMF5   A0A2H1VT74   A0A3S2LA61   A0A1E1WEI7   A0A194RVY7   + More
A0A194Q1R4   A0A212FMB3   W8BEP7   A0A034VC54   A0A0K8UGI8   A0A0A1X4M3   A0A0L0BYI3   A0A1B0FKL5   A0A1I8NSN9   A0A1A9XXJ9   U5ETW4   A0A1L8E5K7   T1PHJ9   A0A336LWF2   A0A1Q3G3C7   A0A182GDI3   A0A023EV24   A0A1J1IH65   W5JK48   A0A182I233   Q17LF4   A0A1Q3FXZ1   A0A182RUY9   A0A182KPV1   A0A182ME56   B0W5C1  

KEGG

101745724    K13886 coronin-1B/1C/6 | (RefSeq) coronin-6

GO

PANTHER

PTHR10856   PTHR10856:SF23  

Length:

148

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00561

Exp number, first 60 AAs:

0.00561

Total prob of N-in:

0.12393

outside

1  -  148

 

 

Pi

168.61975

Theta

158.595759

Tajima's D

0.121092

CLR

230.727855

CSRT

0.405129743512824

Interpretation

Uncertain