Gene

KWMTBOMO09425

Pre Gene Modal

BGIBMGA012775

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX55_homolog_[Papilio_polytes]

Location

Bomo_Chr16(+):999187-1004117      View in EpiBrowser

Full name

RNA helicase       + More
Probable ATP-dependent RNA helicase DDX55 homolog      

Location in the cell

Cytoplasmic   Reliability : 1.478 Mitochondrial   Reliability : 1.144 Nuclear   Reliability : 1.155

CDS

ATGGCCAACAAAGATTGGTCTAAAGTTCAGCCCCCATTATCCAAGCCAGTGTTGAACTGTATTAATAAACATGGTTTTAAAACTATGACTCCGATTCAAGCAGCCGTAATTCCTCTATTATTGTCCTGCAAAGATGTTGTGGCTGAAGCGGTGACTGGATCGGGAAAAACTCTCGCATTTGTCGTCCCGATGCTGGAAATGCTCTTGAAAAAGAAGAAAGATGGACCTTTGAGAAAGGATTTCGTTTACGTAGTCATAATTTCGCCTACAAGGGAACTGGCTACGCAAATATTTAAAGTAATAGAAGATTTCTTACAAGAACCAGAATTAGCCAGTACTACCTTGGCCCTATTAGTCGGTGGTCGTCCCATAGAGGTTGATGCGCTTGCCTTACAGAAAGGAGCTGATATAGCTGTATGCACTCCGGGTAGACTAGAAGACTTGTTGTCTGAAAGGAAACAGTTGAATCTTGCCGGAAGACTGAAAGAGTTGGAACTCTTAGTTCTGGATGAAGCGGACCGTCTACTAGACCTTGGCTTCTCGGGCACACTCACAACCATCCTACAATATTTACCGAGACAACGTCGTACTGGTCTCTTTTCGGCAACACAAACCAAAGAACTGCAGGACTTAGTAAGAGCTGGTCTTCGGAATCCTGTTGTTGTGAGCGTGAAAGAAAAGTCTACAATCAGTACTCCCTTGCTGTTGGAGACTTATTACGTAATTGTTGAAGCTCAGGATAAATTTTTGTTCCTTTTGAACTTTATCAGAAATAGAAAGATAGCTAAAGGTTTATTTTTTCTACCAACGTGTGCATGTGTGGATTACTGGACGGATGTGCTACCCGTATTCCTGCCTGACATTAAAATATTTGGATTACACGGCAAAATGAAGCAGAAACGACACAAAATATTAGAGAAGTTCCGGCAGGCTGATAACACTATCTTGCTTTGTACAGATTTGTTGGCCAGGGGCCTGGACATTCCAGAGGTGGAGTGGGTGTTGCAGTGGGAGCCCCCATGCCAACCCTCCGCTCTCGTGCACCGCGCGGGCAGAGCAGCGAGGGGCGGAGCCCGGGGCTGCGCCCTGCTACCGCTGCTCACCACAGAGGACGCTTACGTGCCCTTCATAAAGACTAATCAAATGGTCGAGTTGAAAGACTGGAGGGAATCTGACGATCAAATCAAAATTACGGACAAGTTAAGGGAAAGGGTGCTCGGCATCCTCCACGAGCAGCAGAAGAAAGACCGCGCCATTTTCGACAAAGGGCAGCGAGCGTTCGTCTCCCACATGCGAGCCTACACCAAACACGAATGCAACCTGCTGCTCCAGTTCAAGGAGCTTCCTCTGGGGCACATCGCCACCAGCTACGGGCTCCTCAAACTGCCTCTCATGCCAGAGATCAAACCGGAGCACAAGCAGCAGTTTGTCGGCCCCAAAGAGGAGATAGACTTTAACACAATTCAGTACAGGGATAAGCAGAAGGAGACGAGTCGCCTGCAGAAGTTGGAGGAGTATAAGAAGAGCGGGGTTTGGCCGTCGAAGAAAAAAAAGAAAATGGTCCAAACACTCCCGTGGGAACAAGCGAAACAGAACAAAGAAGAAAGGAAAGAGAAAAGGAAGAAACGTAAAGAGTTGAAACAGAAGAATCCAGAACTTAAGAAAGGAAAGAAGAGGAAAGTGATAACGCAAGAGGAACTGGACGCGCTGGCCGCCGACGTCGCGCTCATAAAGAAGTTAAAGAAACGTAAAATAACACAGGATCAGTTCGATAGAGAGTTTGAAGCTGATTAA

Protein

MANKDWSKVQPPLSKPVLNCINKHGFKTMTPIQAAVIPLLLSCKDVVAEAVTGSGKTLAFVVPMLEMLLKKKKDGPLRKDFVYVVIISPTRELATQIFKVIEDFLQEPELASTTLALLVGGRPIEVDALALQKGADIAVCTPGRLEDLLSERKQLNLAGRLKELELLVLDEADRLLDLGFSGTLTTILQYLPRQRRTGLFSATQTKELQDLVRAGLRNPVVVSVKEKSTISTPLLLETYYVIVEAQDKFLFLLNFIRNRKIAKGLFFLPTCACVDYWTDVLPVFLPDIKIFGLHGKMKQKRHKILEKFRQADNTILLCTDLLARGLDIPEVEWVLQWEPPCQPSALVHRAGRAARGGARGCALLPLLTTEDAYVPFIKTNQMVELKDWRESDDQIKITDKLRERVLGILHEQQKKDRAIFDKGQRAFVSHMRAYTKHECNLLLQFKELPLGHIATSYGLLKLPLMPEIKPEHKQQFVGPKEEIDFNTIQYRDKQKETSRLQKLEEYKKSGVWPSKKKKKMVQTLPWEQAKQNKEERKEKRKKRKELKQKNPELKKGKKRKVITQEELDALAADVALIKKLKKRKITQDQFDREFEAD

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Similarity

Belongs to the DEAD box helicase family.
Belongs to the DEAD box helicase family. DDX55/SPB4 subfamily.

Keywords

ATP-binding   Coiled coil   Complete proteome   Helicase   Hydrolase   Nucleotide-binding   Reference proteome   RNA-binding  

Feature

chain  Probable ATP-dependent RNA helicase DDX55 homolog

Uniprot

H9JTB3   A0A2H1VT91   A0A194Q699   A0A194RS99   A0A437BFE2   A0A212FMD0   + More
A0A182VW07   A0A182MNG1   W5J575   A0A182GVI8   A0A2M4BHL3   A0A2M4ANF2   A0A2M4BI86   A0A182GXM1   A0A2M4BHJ5   A0A182FS29   Q175I3   A0A336MHP8   B0WK71   A0A182QRE8   A0A182YHX4   A0A182K253   A0A1Q3EXT9   A0A182PRV3   A0A182L8K5   A0A182NQS2   A0A182HKB6   A0A182X9D0   A0A0M4EN68   Q7PX55   A0A182THT4   A0A182V0I3   A0A182RSD3   A0A1B0BKJ9   A0A1B0A549   A0A0L0C3X8   A0A1B0A5N3   A0A1A9Y6F5   A0A1A9UNF7   A0A182JDX9   A0A1B0FRH1   W8B1K3   A0A1I8NH73   A0A1A9WGS6   B4KA13   A0A084W028   A0A1Q3EXS9   A0A2M4AMY6   A0A0K8WFU2   A0A2M4APF4   A0A1I8QD21   A0A1J1I7W0   B4LVT6   B4NAK4   A0A1W4VH96   B4HLN4   A0A3B0KCS2   B3LYX3   Q298Q2   B4G4F7   B4QYN2   Q9VHU1   B4PT28   B3NZV5   A0A0M8ZRM3   E2C3Z6   E2AAH9   A0A088AUQ5   B4JXW1   A0A154PM57   A0A1W4W348   A0A151WUW6   A0A2A3ET37   A0A195CS30   D6WYU0   A0A158NW40   E9JAY7   F4X2F7   N6SVI4   U4U740   A0A1Y1LF35   A0A232EV27   K7IS49   A0A1B6JTZ4   A0A067R2Z7   A0A1B6GFY9   A0A2S2Q6H4   J9K0V4   A0A2J7QH41   A0A2P8YC27   E0VGY5   A0A2H8TN29   A7S4S3   A0A0A9VVU9   A0A1B6CXC2   R4WJS8   C3YD28   A0A2R7X3F6   A0A0P4W7H0   A0A026VVP3  

EC Number

3.6.4.13

Pubmed

19121390    26354079    22118469    20920257    23761445    26483478    + More
17510324    25244985    20966253    12364791    14747013    17210077    26108605    24495485    25315136    17994087    24438588    15632085    10731132    12537572    12537569    17550304    20798317    18362917    19820115    21347285    21282665    21719571    23537049    28004739    28648823    20075255    24845553    29403074    20566863    17615350    25401762    26823975    23691247    18563158    24508170   

EMBL

BABH01004175    ODYU01004311    SOQ44050.1    KQ459582    KPI98935.1    KQ459700    + More
KPJ20352.1    RSAL01000071    RVE49101.1    AGBW02007653    OWR54886.1    AXCM01001239    ADMH02002101    ETN59131.1    JXUM01090920    KQ563875    KXJ73125.1    GGFJ01003386    MBW52527.1    GGFK01008988    MBW42309.1    GGFJ01003387    MBW52528.1    JXUM01095800    KQ564219    KXJ72571.1    GGFJ01003385    MBW52526.1    CH477400    EAT41737.1    UFQT01000590    SSX25548.1    DS231968    EDS29645.1    AXCN02001501    GFDL01014921    JAV20124.1    APCN01000825    CP012526    ALC47002.1    AAAB01008987    EAA01795.5    JXJN01015972    JRES01000936    KNC27058.1    CCAG010004927    GAMC01019434    JAB87121.1    CH933806    EDW16688.1    ATLV01019081    KE525262    KFB43572.1    GFDL01014931    JAV20114.1    GGFK01008823    MBW42144.1    GDHF01002357    JAI49957.1    GGFK01009167    MBW42488.1    CVRI01000039    CRK94489.1    CH940650    EDW67541.1    CH964232    EDW80818.1    CH480815    EDW43061.1    OUUW01000007    SPP82811.1    CH902617    EDV44089.1    CM000070    EAL27903.2    CH479179    EDW24505.1    CM000364    EDX13790.1    AE014297    AY051513    CM000160    EDW96489.1    CH954181    EDV49953.1    KQ435883    KOX69710.1    GL452364    EFN77382.1    GL438125    EFN69580.1    CH916377    EDV90523.1    KQ434954    KZC12544.1    KQ982721    KYQ51653.1    KZ288192    PBC34211.1    KQ977329    KYN03543.1    KQ971357    EFA08391.1    ADTU01027781    ADTU01027782    GL770679    EFZ10065.1    GL888578    EGI59382.1    APGK01054966    APGK01054970    KB741256    ENN71750.1    ENN71754.1    KB631749    ERL85775.1    GEZM01057600    JAV72233.1    NNAY01002058    OXU22212.1    GECU01005035    JAT02672.1    KK853042    KDR12156.1    GECZ01008421    JAS61348.1    GGMS01004126    MBY73329.1    ABLF02036425    NEVH01014358    PNF27905.1    PYGN01000713    PSN41815.1    DS235154    EEB12641.1    GFXV01003624    MBW15429.1    DS469579    EDO41335.1    GBHO01043242    GBRD01003086    GDHC01016998    JAG00362.1    JAG62735.1    JAQ01631.1    GEDC01019425    JAS17873.1    AK417855    BAN21070.1    GG666503    EEN61639.1    KK856724    PTY26328.1    GDRN01085388    JAI61342.1    KK107801    EZA47581.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000283053    UP000007151    UP000075920    + More
UP000075883    UP000000673    UP000069940    UP000249989    UP000069272    UP000008820    UP000002320    UP000075886    UP000076408    UP000075881    UP000075885    UP000075882    UP000075884    UP000075840    UP000076407    UP000092553    UP000007062    UP000075902    UP000075903    UP000075900    UP000092460    UP000092445    UP000037069    UP000092443    UP000078200    UP000075880    UP000092444    UP000095301    UP000091820    UP000009192    UP000030765    UP000095300    UP000183832    UP000008792    UP000007798    UP000192221    UP000001292    UP000268350    UP000007801    UP000001819    UP000008744    UP000000304    UP000000803    UP000002282    UP000008711    UP000053105    UP000008237    UP000000311    UP000005203    UP000001070    UP000076502    UP000192223    UP000075809    UP000242457    UP000078542    UP000007266    UP000005205    UP000007755    UP000019118    UP000030742    UP000215335    UP000002358    UP000027135    UP000007819    UP000235965    UP000245037    UP000009046    UP000001593    UP000001554    UP000053097   

PRIDE

H9JTB3    Q9VHU1   

Pfam

PF13959   DUF4217        + More
PF00271   Helicase_C
PF00270   DEAD
PF13091   PLDc_2

Interpro

IPR000629   RNA-helicase_DEAD-box_CS        + More
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR025313   DUF4217       
IPR027417   P-loop_NTPase       
IPR025202   PLD-like_dom       
IPR001736   PLipase_D/transphosphatidylase       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

H9JTB3   A0A2H1VT91   A0A194Q699   A0A194RS99   A0A437BFE2   A0A212FMD0   + More
A0A182VW07   A0A182MNG1   W5J575   A0A182GVI8   A0A2M4BHL3   A0A2M4ANF2   A0A2M4BI86   A0A182GXM1   A0A2M4BHJ5   A0A182FS29   Q175I3   A0A336MHP8   B0WK71   A0A182QRE8   A0A182YHX4   A0A182K253   A0A1Q3EXT9   A0A182PRV3   A0A182L8K5   A0A182NQS2   A0A182HKB6   A0A182X9D0   A0A0M4EN68   Q7PX55   A0A182THT4   A0A182V0I3   A0A182RSD3   A0A1B0BKJ9   A0A1B0A549   A0A0L0C3X8   A0A1B0A5N3   A0A1A9Y6F5   A0A1A9UNF7   A0A182JDX9   A0A1B0FRH1   W8B1K3   A0A1I8NH73   A0A1A9WGS6   B4KA13   A0A084W028   A0A1Q3EXS9   A0A2M4AMY6   A0A0K8WFU2   A0A2M4APF4   A0A1I8QD21   A0A1J1I7W0   B4LVT6   B4NAK4   A0A1W4VH96   B4HLN4   A0A3B0KCS2   B3LYX3   Q298Q2   B4G4F7   B4QYN2   Q9VHU1   B4PT28   B3NZV5   A0A0M8ZRM3   E2C3Z6   E2AAH9   A0A088AUQ5   B4JXW1   A0A154PM57   A0A1W4W348   A0A151WUW6   A0A2A3ET37   A0A195CS30   D6WYU0   A0A158NW40   E9JAY7   F4X2F7   N6SVI4   U4U740   A0A1Y1LF35   A0A232EV27   K7IS49   A0A1B6JTZ4   A0A067R2Z7   A0A1B6GFY9   A0A2S2Q6H4   J9K0V4   A0A2J7QH41   A0A2P8YC27   E0VGY5   A0A2H8TN29   A7S4S3   A0A0A9VVU9   A0A1B6CXC2   R4WJS8   C3YD28   A0A2R7X3F6   A0A0P4W7H0   A0A026VVP3  

PDB

6EM5     E-value=1.42801e-66,     Score=644

KEGG

101745872    K14809 ATP-dependent RNA helicase DDX55/SPB4 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0004386   GO:0005524   GO:0003723   GO:0004004   GO:0003676   GO:0006508   GO:0015074   GO:0004672   GO:0006468   GO:0006418   GO:0000049   GO:0016876  

Length:

597

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.91857

Exp number, first 60 AAs:

0.18596

Total prob of N-in:

0.08336

outside

1  -  597

 

 

Pi

237.552133

Theta

179.838633

Tajima's D

0.276176

CLR

143.20321

CSRT

0.454327283635818

Interpretation

Uncertain