SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09422
Pre Gene Modal
BGIBMGA013083
Annotation
PREDICTED:_RNA_polymerase_II-associated_protein_1_isoform_X2_[Bombyx_mori]
Full name
Anoctamin      
Location in the cell
Nuclear   Reliability : 3.995
 

Sequence

CDS
ATGTTGAGACGACCAACACCAGGTGAAAATGAAGAAGATATTTTAAAAATGCAAGAAGAGTTCCTTCGCAAGAAGAGGCAGAATCAGAACCTGCAGCCGGCAGCACAAGTCGTTAACTTAAGAACTGAACCAATCAAAAGACCAAATACGAATGAACAAGAAATCCGTAAGCCGTCAAAGTACGCACAAAGTAAAGGTCTTAAGAATCATTCCGAGAAACGTTCCAAAAGTAATGACACAGTTGGAAACTCCGTCATAACTGATGTTTATGAAAAAAATACAGAAAAACCAGTCGAAAAGAAACTTGACGGCGAAGATGACAAGGTTTACTATCCAACAATACTTCCATTTGTATTAGGGGACATTGTCGAAAAGAATTTAGATACTGTAGTTGAGTTTGATTATAAGCCAATGCCACCAGAAGGATTTCCAGTTGTAAGAAAACAAAATAAAGACTCTAAGGCCACTAAGTATATATATCAGAAAAATTTAAATAAAATTAAAAAAAATATAGTTGATAAAATGGATGTAGATGAACCATCATGCTCAAATAATAAACAAAACACCATAAACCTGCCAGATAGAAGTTACATATTGACTTCAGAAAACTCTGATGACATCCACAATGAAAATATAAAAATTCTAAGTAAGATGTCCGAAAAAGAAATTTTAGAAGAACAGCAAAAACTATTCTCTAATTTAGATCCTAAAGTGGTTGACTTTATTAAATCACGGAGAATGCAAAATGAGAACTCAACTCGACAAACACTAAAGTTGAATGAAAGAGATGATATAAATAAGCTAGCTACTGTGAACCAAAATGTAGAAATGGACACAAGCACTCAGGAAATTGAAAATGATACATTATGGGAGAATGATGTTCTTTCTCACCCTGAAATACAAAATTGGCTGCATTTCGACTCGCTAGAGAAAGACAAGCTTCAATGGATGGAAGGACTTGATGAAAGTAAAAACATTAAGCCTGATGAGCCTTATGAAGCGAGGTTTGATTTCAAAGGATATTTACTACCTTATACAATGGAATACACTGATATGACTAAAACTTTATATCACCACGGTGAAGAGCCGCACCGTCCTGGGTATACTATCACAGAGTTAATTGAGTTGACACGGTCAACTATTACACAGCAGAGAGTTATGGCCTTAAATACAATTGCTGGTATCCTCCAGTATCATAGTGCTGGAACTTACAAAGACATTATAGAAATACCATTGAGCAAGTTGTTTTTCATCATAAGAATTGCAATGGATGAAAATAAAGTTATAATTCTTGAACCTGCTTTGAAAGCAATGAGAAATTTAGTGTACAACAAGTTAGATGAAGCGTCGCTCGATGCATTGATAGGATTTGAAGAAGGAAACCTGCAGCCTTGCTTTGAAAATGATAAATCAGAAATAGAGGAACTAGAATCAAAAGAAGCAGAGTTAAAAGACTTTCATTTAGCAGAGATTGATTTAATTGCAGCCCTATTAAGAACAGATATACTGCAAAGGATATACTATATATTAGAGTCAATAAAACCAAGCTTCAACTGTGTACAGTATTGCTTACAGATATTAACAAGACTAGGTAGAGATTCTGTCGAGACTGCCAAAAGAATCTGTGAAATGGAGCACCTCATGAACTCTATAATAACAAATTTTGTTCCGGTGACAGGTGTCAATTTTGTCTTCAAACCACAAGTTGTATATAATGGTAAACCAGTTTTAGCAGCTATAAAGCTACTAAGAGTTCTAAGTCTACAAACTGAAGAAATTTGCAATATTTTACTAATGAAATACAATATTTTAGCACCAATTTCTGTGTATCTGAGTTCAGCAGTTGACAGAAGTTATGGCTTAAGAATACAGACTGAGTCATATTGTATACTATCAAATTTACTTTATTTTGGACTAAGCTATGATAGTGCCATTTCATTGTGTCCAGTCATACTGACAGCTTTATACAAACACGTTCAGGGTACAGACATTAATGTGGAAGCTTCTGTGTTGGCAGCAACACATGCAGCTGTGGTCTTGCAGCTGATAAATAACATACTGAAACATAATTTAAATGATTTTCTTACTTTCAAGACTGAAGTTTATAAGTTGTTGAAGGAAGGGCTATTGAAATGGTTTGGTCAGTTATCGCAAATGGAACATTATACATGTGCGCATCTGAGAATTTTATGCTCGGCTTTAGATTGCTGTTATACTGTTATTGAAATTGAACAATTGCCTGTGAAGTTCGTGAGTGATGCCCTGAAACAACTGTCTTATTCTAAAGGATTTCAAAATGTGATTAACAACCTTAGTTCCTGCTCTAATTTGCTCTCAAAAATTGAAAATAAAGATTTGTATTCAGTTAAGAACTTAATAAGTCTAAAATGCACTGTCATTGATTCTGCTCAAAAAGTTTTACCAATACTGAAAGTTGCATCTCCCATACCTCTGCTGATGTCACTTTTCAAATTACTGACAATAGTCAATCAAAAAGAAATCTCTAGAATATTCTTAGACCATGTTTGGAACTATTTGCAAAGATTATCTAAATGTGTTCCTAGTCTTTCAGATAATTGGTTCACTAGAATGGAAACTAATTTTGTTTTTTACGTTATGAAATTATCTGTTATGTGTAATGTTGATGAAAGCAAAAAGGATGTAATGTATGCAGTAGCTAACAAATTGTGTTACACATTGAGGGTAGATAAAAAATATGAACTAGATTTCTTATTTGAAAGTATCGTTTTTAACAAAGATTGGTTCACGGCCGAAAGGTTGTTAAATCTTGTCAATTTGACTGATGCAGACGGATTCTCAAGAGCTTTAACTGCCATAGAAGACATACGACAATGTTACCGTAGAGTTATTAACTTGAATTACAAAGATACAGGTGCTAATGTTGTGTTAAGAAAATGGATGGAGCCAATTTTGCCAAGAGACTGGATTTATTTGCCAATTTTGATGTTATACAGTAAAAATCAGGAGGCGGAGTCGATTCCCCATGTTTCCGGAGATCATGCCCAGAAAATGTCAGCGCAAATAGCGACCGAAAAGGAATTTATAATAACATGTAGCTTAGAATGGATATTGTTTAACGAACTCTGTTTTTCTGATTTAGTCAATGATATTGATGTAACAGATAGATTTTGTCGAATCATGTGCGTGTTTTTATGTGACAACTCGTTATTCTTGCAACCAAAAATTAGAATGTTACTGCAGAAATGCACCAATGTCCTTTTCAAAAAGAAATCAGCCTTCAATTTCGATAAACAATTAACGGGCTTGAACAACTTCCAAGATTTCTACACACAGTTTCTAGAACAATTCCAAGCGGTCAGCTATGGAGATGACGTGTTTTCTGCATGTGTATTGGTGCCTTTAGCTCAAAAGCATAATGTTAAATGGAGGAAATTGATATGGTCGGAATATGCTGGATGTCTCCGGGCGTTAGATTGCCCGGAACAACTACTTTGTTATGAAGTAAATGAGTATCTTTATCCAGAAGAGACGGACGAATCTTTGATTAAATCTTATCATCGCGCGCTATCCTGTAATTTACTACGACCGGATACAATAATGCATAAAATTGCGAGTCATCACGTGCACATATTCAAGAATCGATCTCAGATACAAAACACTTGA
Protein
MLRRPTPGENEEDILKMQEEFLRKKRQNQNLQPAAQVVNLRTEPIKRPNTNEQEIRKPSKYAQSKGLKNHSEKRSKSNDTVGNSVITDVYEKNTEKPVEKKLDGEDDKVYYPTILPFVLGDIVEKNLDTVVEFDYKPMPPEGFPVVRKQNKDSKATKYIYQKNLNKIKKNIVDKMDVDEPSCSNNKQNTINLPDRSYILTSENSDDIHNENIKILSKMSEKEILEEQQKLFSNLDPKVVDFIKSRRMQNENSTRQTLKLNERDDINKLATVNQNVEMDTSTQEIENDTLWENDVLSHPEIQNWLHFDSLEKDKLQWMEGLDESKNIKPDEPYEARFDFKGYLLPYTMEYTDMTKTLYHHGEEPHRPGYTITELIELTRSTITQQRVMALNTIAGILQYHSAGTYKDIIEIPLSKLFFIIRIAMDENKVIILEPALKAMRNLVYNKLDEASLDALIGFEEGNLQPCFENDKSEIEELESKEAELKDFHLAEIDLIAALLRTDILQRIYYILESIKPSFNCVQYCLQILTRLGRDSVETAKRICEMEHLMNSIITNFVPVTGVNFVFKPQVVYNGKPVLAAIKLLRVLSLQTEEICNILLMKYNILAPISVYLSSAVDRSYGLRIQTESYCILSNLLYFGLSYDSAISLCPVILTALYKHVQGTDINVEASVLAATHAAVVLQLINNILKHNLNDFLTFKTEVYKLLKEGLLKWFGQLSQMEHYTCAHLRILCSALDCCYTVIEIEQLPVKFVSDALKQLSYSKGFQNVINNLSSCSNLLSKIENKDLYSVKNLISLKCTVIDSAQKVLPILKVASPIPLLMSLFKLLTIVNQKEISRIFLDHVWNYLQRLSKCVPSLSDNWFTRMETNFVFYVMKLSVMCNVDESKKDVMYAVANKLCYTLRVDKKYELDFLFESIVFNKDWFTAERLLNLVNLTDADGFSRALTAIEDIRQCYRRVINLNYKDTGANVVLRKWMEPILPRDWIYLPILMLYSKNQEAESIPHVSGDHAQKMSAQIATEKEFIITCSLEWILFNELCFSDLVNDIDVTDRFCRIMCVFLCDNSLFLQPKIRMLLQKCTNVLFKKKSAFNFDKQLTGLNNFQDFYTQFLEQFQAVSYGDDVFSACVLVPLAQKHNVKWRKLIWSEYAGCLRALDCPEQLLCYEVNEYLYPEETDESLIKSYHRALSCNLLRPDTIMHKIASHHVHIFKNRSQIQNT

Summary

Similarity
Belongs to the anoctamin family.
EMBL
BABH01004178    ODYU01004311    SOQ44047.1    NWSH01000086    PCG79760.1    JTDY01000595    + More
KOB76534.1    KQ459700    KPJ20355.1    KQ459582    KPI98938.1    KQ971372    EFA10420.1    GEZM01099127    JAV53478.1    GEZM01099126    JAV53479.1    GEZM01099128    JAV53477.1    KB632381    ERL94148.1    APGK01043331    APGK01043332    APGK01043333    KB741014    ENN75421.1    NEVH01006990    PNF36178.1    KK852832    KDR15317.1    JRES01001238    KNC24389.1    GDHF01019249    JAI33065.1    KZ288220    PBC32151.1    GAMC01013361    JAB93194.1    KQ435878    KOX70008.1    KQ976738    KYM75858.1    KQ434889    KZC10341.1    ADTU01021196    GEDC01024759    JAS12539.1    QOIP01000008    RLU19890.1    GL888208    EGI64919.1    KK107109    EZA59089.1    AJWK01008657    JXJN01016527    GL445346    EFN89719.1    CCAG010006129    NNAY01000356    OXU28942.1    KQ981208    KYN44737.1    PYGN01000293    PSN49130.1    KQ414706    KOC63085.1    CVRI01000047    CRK97831.1    GEBQ01013170    JAT26807.1    LJIG01022847    KRT78413.1    GFTR01008425    JAW08001.1    CM000363    CM002912    EDX10225.1    KMY99221.1    KQ982351    KYQ57281.1    GGFL01001133    MBW65311.1    GEBQ01019557    JAT20420.1    GBGD01000304    JAC88585.1    GL439932    EFN66554.1    GL765974    EFZ15790.1    CH964095    EDW79190.1    GECL01001770    JAP04354.1    LBMM01003800    KMQ93122.1    KQ977372    KYN03273.1    GBHO01041460    JAG02144.1    GDHC01016316    JAQ02313.1    JH818024    EKC39839.1    DS235222    EEB13497.1    NHOQ01002481    PWA16478.1    AYCK01008751    UFQT01000044    SSX18794.1    GBYB01010675    JAG80442.1    AGTO01021192    KK800801    KFQ28569.1    CM012458    RVE57278.1    AADN05000303    KL461090    KFV13001.1    KK930350    KFQ44847.1   
Pfam
PF08621   RPAP1_N        + More
PF08620   RPAP1_C
PF03208   PRA1
PF16178   Anoct_dimer
PF04547   Anoctamin
PF00089   Trypsin
PF08395   7tm_7
Interpro
IPR013930   RNA_pol_II_AP1_N        + More
IPR039913   RPAP1/Rba50       
IPR013929   RNA_pol_II_AP1_C       
IPR016024   ARM-type_fold       
IPR011989   ARM-like       
IPR004895   Prenylated_rab_accept_PRA1       
IPR032394   Anoct_dimer       
IPR007632   Anoctamin       
IPR001254   Trypsin_dom       
IPR001314   Peptidase_S1A       
IPR009003   Peptidase_S1_PA       
IPR013604   7TM_chemorcpt       
SUPFAM
SSF48371   SSF48371        + More
SSF50494   SSF50494       
Gene 3D

Ontologies

Topology

Subcellular location
Membrane  
Length:
1214
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.424370000000002
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00020
outside
1  -  1214
 
 

Population Genetic Test Statistics

Pi
163.599172
Theta
175.584325
Tajima's D
-0.232861
CLR
136.021351
CSRT
0.310084495775211
Interpretation
Uncertain
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