Gene

KWMTBOMO09413

Pre Gene Modal

BGIBMGA013086

Annotation

PREDICTED:_crossover_junction_endonuclease_EME1_[Papilio_polytes]

Location

Bomo_Chr16(-):871408-883026      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.021 Nuclear   Reliability : 1.065

CDS

ATGAATAAGATTTATAAGCCAGGAGAATGTATGAAGTATATGTACGTGGAGATTCATCCTGTGCTAGCTGAAGCTTGGTACATGGCGGACGTCTCACGGGAGGTGACTTCTGCGTCTGCCCATCTCATAACCACATCAAGTATCTGCGACCCTGCTTTGGTTATGTGGAGCAGGCAGGTGCCGCAGACCTTGATCAATGATGATGGACTGGCGAAGCTAAGCCCGCAGAGCGAGCGCGCCTCGCTGGCGCTGTACGTGTGTACTGCGGAGGAGGCGGCTCGGCACGTGCGGGCGGGGTCGCTGGGCGCGCACGTGCGCCGCGTGCGGGACCTGGCCGGCGCCGCGTTGACTCTCGTCGTCTTCGGCGTCAACGATTACTTCAAGTCGTGCGGCCGCAAGACAATGAACAGCAGCCGGAAACTGATCGGGGAACTTGATTTGGAGCTCGCTATTACCGATTTGCTGGTGACGACCGACTGTGACACGGTCCTGGTGAACTCCTCGAGCGAACTGGCACTGCTGATCGTCCAGCACACCAAGGCGATAGCCGAGGCGCCGTACAAGTAA

Protein

MNKIYKPGECMKYMYVEIHPVLAEAWYMADVSREVTSASAHLITTSSICDPALVMWSRQVPQTLINDDGLAKLSPQSERASLALYVCTAEEAARHVRAGSLGAHVRRVRDLAGAALTLVVFGVNDYFKSCGRKTMNSSRKLIGELDLELAITDLLVTTDCDTVLVNSSSELALLIVQHTKAIAEAPYK

Uniprot

A0A2A4K6X0   A0A194Q040   A0A194RSB4   A0A3S2PEI2   S4PD80   A0A3S2L718   + More
A0A2H1VKN1   A0A2H1WLI6   A0A212FM70   E2BNH5   E2AP72   A0A2J7RPL6   A0A0M9AA21   A0A336M418   A0A1B6EFP8   A0A195FGW1   A0A2J7RPK5   A0A336MTC3   A0A2J7RPL3   A0A2A3EP88   F4X397   A0A0J7L200   E9IHL3   A0A088AF59   A0A2Z5TZG6   A0A151WEQ3   A0A026WIC1   A0A151IKY6   A0A310S6K4   A0A139WMN6   A0A139WN59   A0A0L7QYK8   A0A067RC06   A0A151JRI3   A0A1B6CUR5   A0A158NHB2   A0A182MV76   A0A195BEN9   A0A0P6JSN9   A0A2J7RPL4   A0A0A9Y4C6   A0A154PT81   B0WA29   A0A084VSF6   A0A1Y1LWC7   A0A1Q3F2K0   A0A182JEW6   A0A182G1L4   A0A1S4FNY9   A0A182PEL9   A0A1Y1LUS3   A0A182NG93   A0A1Y1LQT7   A0A1Y1LNX2   A0A182W2M3   A0A182R757   A0A1B0C8C0   A0A182K799   A0A182QIX6   A0A3Q0IPC8   A0A093Q4C7   A0A093J4F0   A0A093NY37   A0A2S2QAY4   A0A093JYB2   A0A2I0TRM9   A0A182SGE6   A0A1B6GWG4   A0A182XLZ4   A0A1J1I4G6   W4XD62   A0A087R2W9   A0A182XVE6   A0A0P4W0Q1   A0A091P033   A0A182HTH3   A0A182VG44   A0A182TQD0   A0A091J5L0  

Pubmed

26354079    23622113    22118469    20798317    21719571    21282665    + More
26760975    24508170    30249741    18362917    19820115    24845553    21347285    26999592    25401762    24438588    28004739    26483478    25244985   

EMBL

NWSH01000086    PCG79766.1    KQ459582    KPI98947.1    KQ459700    KPJ20367.1    + More
RSAL01000071    RVE49095.1    GAIX01003771    JAA88789.1    RSAL01002355    RVE40505.1    ODYU01003090    SOQ41409.1    ODYU01009396    SOQ53792.1    AGBW02007654    OWR54831.1    GL449414    EFN82754.1    GL441481    EFN64745.1    NEVH01001358    PNF42774.1    KQ435706    KOX80287.1    UFQT01000526    SSX24995.1    GEDC01000587    JAS36711.1    KQ981606    KYN39611.1    PNF42772.1    UFQT01001720    SSX31517.1    PNF42770.1    KZ288199    PBC33623.1    GL888609    EGI59078.1    LBMM01001218    KMQ96706.1    GL763289    EFZ19920.1    FX985865    BBA93752.1    KQ983238    KYQ46282.1    KK107207    QOIP01000002    EZA55411.1    RLU26055.1    KQ977151    KYN05258.1    KQ767877    OAD53267.1    KQ971312    KYB29298.1    KYB29297.1    KQ414688    KOC63694.1    KK852605    KDR20403.1    KQ978592    KYN29952.1    GEDC01020072    JAS17226.1    ADTU01000256    AXCM01000235    KQ976509    KYM82652.1    GDUN01000221    JAN95698.1    PNF42773.1    GBHO01017130    GBHO01017128    JAG26474.1    JAG26476.1    KQ435180    KZC14987.1    DS231868    EDS40762.1    ATLV01015947    KE525048    KFB40900.1    GEZM01050880    JAV75327.1    GFDL01013262    JAV21783.1    JXUM01038779    KQ561178    KXJ79461.1    GEZM01050882    GEZM01050878    JAV75326.1    GEZM01050873    JAV75331.1    GEZM01050877    JAV75329.1    AJWK01000333    AXCN02001628    KL671685    KFW83491.1    KK568515    KFW05879.1    KL225043    KFW66905.1    GGMS01005487    MBY74690.1    KL206555    KFV83389.1    KZ507618    PKU36466.1    GECZ01003074    JAS66695.1    CVRI01000037    CRK93273.1    AAGJ04139140    KL226066    KFM07823.1    GDRN01081682    JAI61969.1    KL377626    KFP85050.1    APCN01000528    KK501478    KFP15113.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    UP000008237    + More
UP000000311    UP000235965    UP000053105    UP000078541    UP000242457    UP000007755    UP000036403    UP000005203    UP000075809    UP000053097    UP000279307    UP000078542    UP000007266    UP000053825    UP000027135    UP000078492    UP000005205    UP000075883    UP000078540    UP000076502    UP000002320    UP000030765    UP000075880    UP000069940    UP000249989    UP000075885    UP000075884    UP000075920    UP000075900    UP000092461    UP000075881    UP000075886    UP000079169    UP000053258    UP000054081    UP000053584    UP000075901    UP000076407    UP000183832    UP000007110    UP000053286    UP000076408    UP000075840    UP000075903    UP000075902    UP000053119   

Pfam

PF02732   ERCC4

Interpro

IPR033310   Mms4/EME1/EME2        + More
IPR006166   ERCC4_domain       
IPR003892   CUE       

ProteinModelPortal

A0A2A4K6X0   A0A194Q040   A0A194RSB4   A0A3S2PEI2   S4PD80   A0A3S2L718   + More
A0A2H1VKN1   A0A2H1WLI6   A0A212FM70   E2BNH5   E2AP72   A0A2J7RPL6   A0A0M9AA21   A0A336M418   A0A1B6EFP8   A0A195FGW1   A0A2J7RPK5   A0A336MTC3   A0A2J7RPL3   A0A2A3EP88   F4X397   A0A0J7L200   E9IHL3   A0A088AF59   A0A2Z5TZG6   A0A151WEQ3   A0A026WIC1   A0A151IKY6   A0A310S6K4   A0A139WMN6   A0A139WN59   A0A0L7QYK8   A0A067RC06   A0A151JRI3   A0A1B6CUR5   A0A158NHB2   A0A182MV76   A0A195BEN9   A0A0P6JSN9   A0A2J7RPL4   A0A0A9Y4C6   A0A154PT81   B0WA29   A0A084VSF6   A0A1Y1LWC7   A0A1Q3F2K0   A0A182JEW6   A0A182G1L4   A0A1S4FNY9   A0A182PEL9   A0A1Y1LUS3   A0A182NG93   A0A1Y1LQT7   A0A1Y1LNX2   A0A182W2M3   A0A182R757   A0A1B0C8C0   A0A182K799   A0A182QIX6   A0A3Q0IPC8   A0A093Q4C7   A0A093J4F0   A0A093NY37   A0A2S2QAY4   A0A093JYB2   A0A2I0TRM9   A0A182SGE6   A0A1B6GWG4   A0A182XLZ4   A0A1J1I4G6   W4XD62   A0A087R2W9   A0A182XVE6   A0A0P4W0Q1   A0A091P033   A0A182HTH3   A0A182VG44   A0A182TQD0   A0A091J5L0  

KEGG

101741395    K10882 crossover junction endonuclease EME1 [EC:3.1.22.-] | (RefSeq) crossover junction endonuclease

PATHWAY

03440    Homologous recombination - Bombyx mori (domestic silkworm)
03460    Fanconi anemia pathway - Bombyx mori (domestic silkworm)

GO

GO:0006281   GO:0005634   GO:0048476   GO:0004519   GO:0003677   GO:0004518   GO:0031573   GO:0006302   GO:0000712   GO:0031297   GO:0000790   GO:0016021  

PANTHER

PTHR21077  

Length:

188

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.629439999999999

Exp number, first 60 AAs:

0.08415

Total prob of N-in:

0.20167

outside

1  -  188

 

 

Pi

178.791596

Theta

147.126401

Tajima's D

0.643111

CLR

0.06259

CSRT

0.55607219639018

Interpretation

Uncertain