Silkworm Genome Informatics Database

Gene

KWMTBOMO09409

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr16(+):777117-783490 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.245 Nuclear Reliability : 1.186

CDS

ATGTCCCCGGCAGCTCTCTGGTTGCTAAAGGGGCAGGCCTTCCAGAGGGGGGTACCGGTACGCCAGCGTGGCCACATCATGGTCAGACGTGTGGGTCTGTCAGTAATGGCAGACCCCAAGAGGATGAGAAGTGAACCGGAGGGCACTCCCTTCCGGTCGCTGGTTGCCATGTCCCCGGTTGCCTCTTGGCAGCTACAGGGGAAGGCCCTCCAGAGCGGGGTACCGGTTTACCGGCGTGGCTTCGTAGAAGCATACCGAGGGTACCACCTTAGGTGGAGAATCCCTCCGTGCTTCCACCTCGGTGGGAGCACGCTGCCCCGCGTATTCTGGGGGGGCAAAGCTTGCCATGACGAAGGGGGCTGTGTGACGGGCAGCGGAAAACCCGTCGAACAGAGACACGCCAGCGCTGACTTGACGCACTCTGGGCACGTCAGTGACAGCGAGGCGGCTGGCTCGAAAGAGACAACCGCCAAAAAGATAAGGCGGAAAAGGAAGACCCAGCGAGTTTCCTCACGCGAGGGGGGAGGGGATCCAACGTCATCCTCTGGCGCAGATGCCCCGCCGGAGAAGGTTCTGGTAGTCTCCGATGCGGCCTCTGCTGCGGAGGAGATGCCGCCCCCAAAAGGAAGACCCGCCCGGAGGAGGGGCGCGCCGTCACCGGCGCAGTCATCGGCGTCGATGTCTGTCGCCTCACTGGACGGGCGAACGACAGAGGAGGAAGAAGGCGGCCTTCAAGACCCTGCCTTGGTCATAGACAGGGCCATGAGGACCGTCAAGTCATATGCGGCCAACGGCACTAAGACCAAAGCCGCTGGCCGTAAGCTGCGAGAGGTAGCCTCGCAGGTCTCGAAGGTTCTGCCTTCGGTTGCTTCCGCCAATGACCAGGTGGTACAGCTGATGGCGGAGAATTCGAGGCTTCGAGCACTACTTCAAGCCCAACAGCAGCCTGATGATGAGGCTTCTGCTTCGAGTAAGGCAGCGGCGTCAACGCCGTCGCCCGCGTTGCCCCGGGCCACTGGGTTGCGAACTCCACCGGCCCATGTACCGGCAGCGACGTCATGTATCGCCGGGGCGCCCCAGAAGCGCCGTTCCCCGGCGCTGACTGGCGATGGGTGGCCTCAACCGCGCGCGCCGCGGTCGGCGGCAGTGGTCCTAACGCTGCTGCCGGCTGCCAAAGCCAAGGGCATGACATACGGAGATGTCATTGCTCGGGCGCGCGCGGCAGTTGACCTGGATGAGATCGGGGCGGGGGAGGGCCTCCGCTGTAGGCAGACAGCCAATGGGGCCAAACTGCTAGAATGTCCCGTTGCCGATAGTCCCGGCATCGCGGAGCGTCTGGCGGCAAGGCTCCGTATGGTCCTGCCTGAAGAGGAGGTGCGGGTGCATAGGCCGGTCAAGATGGCCGAATTGAAAGTGACCGGCCTGGACGACTGCACCACCAGGGAGGAGGTGGCGGCGGCCGTCGCTGCCCAGGGCAACTGTGCCCTGCAGAACATAACAGTAGGCGAGCTGCGCTCCGGTTATACCGGGGCTGGTTCCGTGTGGGTACGTTGCCCGGTGGAGGCGGCCGTTGCCCTGGCTGCTCCTCCGCCCGGGAGACCGTCGGGGGATCCGGGCAGGTTGCGCGTGGGCTGGATAGCAGCCCACGTGCGCCTGCTAGAACCGCGTGCCTGGCGGTGCCTAAGGTGCTTCAGCACTGGGCACTGCCTCACCAGGTGCGTGAGTGCGGTTGACCGCAGCGGACTGTGCTTCCGCTGTGGTCAGCCTGGACACAAGGCGGCCGTGTGCTTGGCTGCGCCGCATTGTTCGTTATGTGCGGCGGCCGGACGCAAGGCTGACCACCGGACCGGGGGCAAGGCATGCCCCCCGGCCGGCAAAAATGCAATTAGAAATTGGCGCCGCCAAGCTAAGCGTCGCCAAAAGAAGCGGTCGGCTGGGGGAGCACCGGCTGGCACTTTGGCCCCCGCTGAGGCGTTCGAGCCCGATAGCGGGGACAATAGAGTAGGGGAGGGGGCGATGTATGTGGTCCAGGACATGCTGCTCCAGACTATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCGTACTTCGTTCCCCCAGCGGACGACTGCTGGTTTGGGGACGTTGATGGCTTGGCGGCCATACATATAAGAAGATCCGCGATGATTCCTCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAATTAGAAAATACCGTCGTGATCGGGGTGTACTTCTCTCCAAATCGGCCTACCGTCGAGTTCGAGCGGTTTCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCTCTCCCCGTTCGGTAATACTGGCGGGGGACTTCAATGCGAAGTCTGTCGCTTGGGGTTCCCCATCCACGGACGCTCGTGGTAGGCTGTTGGAGGAGTGGGCGGTCGCGGCCGATCTCTGTATCGTTAACAGGGGCTCGGTCGCGACATGCGTGCGGTGGACGGGAGAGTCTATCGTGGACTTGACGTTCGCGAGCTCGTCCATCGCACAGCGCATCCTCGGCTGGGGCGTGGTGGTGGGGGCGGAATCGTTGTCGGATCACCGATATATCCGGTTCGATCTTTCCGCTCCCGCGCCGACGCCGGCCGCAGGCGCTCGCGGGGTTAACCCCCCGCGGAGTGCGTTCCGATCATTCCCTAGGTGGGCATTGAAGCTCCTGAAGAAGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCGTGGACGCCCATGCGCCCACACCCTTTCGATGTGGAGGCTGAGGCCGAATGGTTCCGCGGCGCGATGCACCGCATATGCGATGCCTCGATGCCCCGGGTCGGCCCTCGGCATTGCGGACGGCGGCAGTCGCCCTGGTGGTCGCCTGAAATTGCGAGATTGCGTGCAGTCTCCATTCGGGCGAGCCGCCAGTGTGCTAGACACCGCCGTCGCCGTCACCTGCGGCGCGACGACCCCGTCGCGTTCGCAGAGGAGGAGACCCGGCTGCACGGCGAATATCGCGCTGCGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGCGGATCCATGGGGGAGCCCGTACAGACTGGTGCGCGGTAAACTGCGCCCGTGGGCCCCCCCTTTGACTGAGCGACTTCAGCCTCAACAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGAGGGTTTTGTTCCCCCCGCTATGGGTGAGCCGTCGGACGCCATCGACGGCGAAGCCCCTGCTGAGGTGCCCCATATTACTGGGGCAGAGCTCCGTGTGACCGTTGTCAGGATGACTGCAAAGGACACGGCCCCCGGCCCGGACGGAGTCCATGGTCGGGTGCTGGCCTTGGCCCTCGATGCCCTAGGGGACCGGCTCCTGGAGCTATTTAATGGTTGCCTGGAGTCGGGACGGTTTCCGTTGCTCTGGCGGACGGGCAGACTTGTGCTGTTGAAAAAGGAGGGGCGCCCGGTGGATACAGCCGCCGGGTATCGTCCTATCGTACTGCTGGACGAGGCGGGAAAATTGCTGGAGCGTATTCTGGCTGCCCGCATCGTTCAGCACCTGGTCGGGGTTGGACCTGACCTGTCGGCGGAGCAATTCGGCTTCCGGGAGGGCCGTTCGACCGTGGATGCAATTCTTCGCGTGCGGGCCCTCTCGGACGAGGCTGTCTCACGGGGTGGGGTGGCACTGGCGGTGTCTCTTGACATCGCCAACGCATTTAACACCCTGCCCTGGTCGGTCGAATGTACCGGGTACGGTGGGACCCTTCACCGTTTTCCGGTCGTGCGTGGTGTTCCGCAGGGGTCGGTTCTCGGACCCCTCTTGTGGAACATCGGGTACGACTGGGTGCTGAGGGGTGCCCTCCTCCCGGGTCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGCGATGATTATAGAGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGGAGGATCAAGAGACTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCTTGTGGTTTCACGGGCCGCGGAGAGCGCCACCTGTCGACGCCCACATCGTGGTTGGGGGCGTCCGGATAGGGGTCGGGGTGCAGTTAAGGTACCTCGGCCTCGTGTTGGACGGCCGGTGGGCTTTTCGTGCTCACTTTGCGGAGCTGGTCCCTCGATTAATGAGGACAGCCGGTTCTTTGAACCGACTGCTCCCGAATATCGGGGGGCCGGATCAGGTTGTACGCCGCCTCTACGCTGGGGTGGTGCGATCGATGGCCCTGTACGGTGCGCCTGTATGGGCTGAGCCGCGCAATCGGGCTACTATGGCTCGGTTCCTGCGCCGGCCGCAGCGCACCGTTGCTATCAGGGTCATCCGTGGATATCGCACCGTCTCATTCGAGGCGGCGTGTGTGTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGTGAGCTTCGTGCTCTGGGCGTGGCGCGTCCCTCCAAAAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAATCGTGGTCGAGGCGGTTGGCCAACCCCACGTGGGGTCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTTATGACTGGGTGAATCGTGGCCGAGGACGCCTCACCTTCCGTCTGGTGCAGGTGCTGACTGGGCACGGATGCTTTGGAAAGTACCTGCACCGGATAGGAGCTGAGCCGACGACGAGGTGCCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCTCCGTGTCCTTGTCGCAAAGATAGGACCAGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCGGCGACGAGTCTTGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGACAAAGCTCTCCTCACTACGCAGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCCCGTCCGTAACCCGGCCCCCTAA

Protein

MSPAALWLLKGQAFQRGVPVRQRGHIMVRRVGLSVMADPKRMRSEPEGTPFRSLVAMSPVASWQLQGKALQSGVPVYRRGFVEAYRGYHLRWRIPPCFHLGGSTLPRVFWGGKACHDEGGCVTGSGKPVEQRHASADLTHSGHVSDSEAAGSKETTAKKIRRKRKTQRVSSREGGGDPTSSSGADAPPEKVLVVSDAASAAEEMPPPKGRPARRRGAPSPAQSSASMSVASLDGRTTEEEEGGLQDPALVIDRAMRTVKSYAANGTKTKAAGRKLREVASQVSKVLPSVASANDQVVQLMAENSRLRALLQAQQQPDDEASASSKAAASTPSPALPRATGLRTPPAHVPAATSCIAGAPQKRRSPALTGDGWPQPRAPRSAAVVLTLLPAAKAKGMTYGDVIARARAAVDLDEIGAGEGLRCRQTANGAKLLECPVADSPGIAERLAARLRMVLPEEEVRVHRPVKMAELKVTGLDDCTTREEVAAAVAAQGNCALQNITVGELRSGYTGAGSVWVRCPVEAAVALAAPPPGRPSGDPGRLRVGWIAAHVRLLEPRAWRCLRCFSTGHCLTRCVSAVDRSGLCFRCGQPGHKAAVCLAAPHCSLCAAAGRKADHRTGGKACPPAGKNAIRNWRRQAKRRQKKRSAGGAPAGTLAPAEAFEPDSGDNRVGEGAMYVVQDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGLAAIHIRRSAMIPPLAMVTRGPGIVAVQLENTVVIGVYFSPNRPTVEFERFLDGLEVIARHLSPRSVILAGDFNAKSVAWGSPSTDARGRLLEEWAVAADLCIVNRGSVATCVRWTGESIVDLTFASSSIAQRILGWGVVVGAESLSDHRYIRFDLSAPAPTPAAGARGVNPPRSAFRSFPRWALKLLKKELLVEASMVAAWTPMRPHPFDVEAEAEWFRGAMHRICDASMPRVGPRHCGRRQSPWWSPEIARLRAVSIRASRQCARHRRRRHLRRDDPVAFAEEETRLHGEYRAAKDALRLAIRRAKEQNMERLLEALEADPWGSPYRLVRGKLRPWAPPLTERLQPQQLRDIVSALFPQEREGFVPPAMGEPSDAIDGEAPAEVPHITGAELRVTVVRMTAKDTAPGPDGVHGRVLALALDALGDRLLELFNGCLESGRFPLLWRTGRLVLLKKEGRPVDTAAGYRPIVLLDEAGKLLERILAARIVQHLVGVGPDLSAEQFGFREGRSTVDAILRVRALSDEAVSRGGVALAVSLDIANAFNTLPWSVECTGYGGTLHRFPVVRGVPQGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGDDYRESARLATAGVALVVGRIKRLGLDVALSKSEALWFHGPRRAPPVDAHIVVGGVRIGVGVQLRYLGLVLDGRWAFRAHFAELVPRLMRTAGSLNRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRTVSFEAACVLAGTPPWELEAESLAADYRWRSELRALGVARPSKSELRARKAHSRRSVLESWSRRLANPTWGLRTVEAVYPVFYDWVNRGRGRLTFRLVQVLTGHGCFGKYLHRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQLRVLVAKIGPDLSLPGVVASMLGGDESWKAMLDFCECTISQKEAAGRVRQSSPHYAETRRRRAGGRDRGPVRNPAP

Uniprot

A0A0J7KQK3 A0A0J7NFZ0 A0A0J7N0R3 A0A3S2LNH8 A0A0J7KFH2 J9KJG8 + More
J9LA43

EMBL

LBMM01004272 KMQ92618.1 LBMM01005474 KMQ91485.1 LBMM01012412 KMQ86235.1 + More
RSAL01003504 RVE40273.1 LBMM01008278 KMQ89009.1 ABLF02041886 ABLF02018098

Proteomes

UP000036403 UP000283053 UP000007819

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01421   Reprolysin

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom
IPR024079   MetalloPept_cat_dom_sf
IPR001590   Peptidase_M12B

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10 3.40.390.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7NFZ0 A0A0J7N0R3 A0A3S2LNH8 A0A0J7KFH2 J9KJG8 + More
J9LA43

PDB

1WDU E-value=1.4991e-09, Score=156

KEGG

101737183 no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0006508 GO:0015074 GO:0004672 GO:0005524 GO:0006468 GO:0006418 GO:0000049 GO:0016876

Length:

1702

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01242

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00003

outside

1 - 1702

Pi

159.536486

Theta

119.776785

Tajima's D

1.083735

CLR

0

CSRT

0.681165941702915

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree