SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09408
Pre Gene Modal
BGIBMGA013089
Annotation
PREDICTED:_GAS2-like_protein_1_[Papilio_polytes]
Location
Bomo_Chr16(-):691527-763276      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.987
 

Sequence

CDS
ATGGCGAGCGCTGGTGCCGTACTCCTGGAGGCTCGGCCCTTCAGGCCGTTCAAATCGTCTGAGGAGTACCTCTACGCTATGAAGGAGGACCTGGCTGAATGGCTGACGGTGCTGTACCCCGAACTCAGGATCACCGCTGATAACTTCCTCGACAGACTCGACACGGGCGTCGCTTTGTGCAGGCACGCGAACGCCGTGAGGGACTCCGCTAAGTTGATCCTCGACGCTCCACAACCGGAGGCCGAAGATGCCATCATTCTGGCAAAAGCACTGCGCTCCCGTCCCCCGGTCAACATGCTCCCGGCCGCCAAAGCCGGCACGTTCTTCGCCAGAGACAACCTCTCCAACTTCATCGACTGGTGTCGTAAGGCGCTCGGCATTTTAGAGTGCCTACTCTTCGAAACTGACGATCTATGTCTCAGGAAAAATGAAAAGCACGTCGTTCTCTGCTTGCTCGAGGTAGCCAGGAAGGGAGCCGTGCTTGGTATGCCAGCACCTCTACTAGTGCAGATGGAGAAGCAGATTGAGAGAGAATTGGCAGGGGAAGAGTTACGGCCCGATGATTCTGCTCTAGGATTGACAGTGCCTACTGGGCCCCAGCCCCAATTGGTGACCAACGATCTGAGGAGTTTGGACGAGAGAGTCAGGGACTTGGTGGAGCGATGCTCCTGCCCCACGCAGTTCCCTATGGTCAGGGTCTCAGAGGGAAAATACAGGATTGGCGACACCAGGATGCTGATTTTTGTTAGGATCCTACGCTCGCACGTGATGGTCCGCGTGGGAGGAGGCTGGGATACCCTAGCCCACTATCTGGACAAACACGACCCTTGCCGCTGCAAGGCCCAGCACCGCACCTCGCTCTCGGCAAGGTTGGCCCGCCCTAAGCACGACCTGGTCGGCGCCACAGTCACATACGAGCGTCCAGACCCTGGCCCAACCTCCCTGCCTTACAGCAAGGAGAAGAACGATCGATACGAACCCACCTCTCTCCAATACCACGAAGAAAGACATTATACCTCCACTAACAGATTGAACGAGCCCACCAGCCTCCCGTACTTGGAGACAGAACGCTCACACTCTCCCAGCAGAAAACTGTTAGCTCCCAGGTCTATCAGTCCAGGGAGGAAGTCGTCCTCTCCTGATAGGAGAACCAAGATCGTGCCGTCGAACCACTTAGTGCCTACTCCTCTTGGCTTGAGGAACAAAAGTCCAAGGCCGGTCTCTCCAGCTCCTGCCGCAGAAAGTGCATCGGACAACGGCTCTGAAGTATCCGACGAGGGCTACAGGAGTCTGGGCGTAGTGGCCGGGTCCACCCAGGGGTCTCCGTCTACGAAGGCTCTTAACAGATACTCGCTGCACAGTCAAAATTCAATTGAAGACGCTGAATTCAATGAGCGTCTCGACCAAGACGACGGTTGCCATATGGATAAAGGCGACAGGGATGACTACGTGAGTATCAGCACTGGTCTCCGGAAGACCGATTTCTCAGATACGTTCTACGGAAGCCGGAAGACGAGTTCCGTTGATGAGAAATCAATTAGGGGCAGCCCCGAAAAGATCGTGGTGGTAGAGAACAATGATGCACCGAGCAAGAGCCTACGTCCTAGTCGCGGAGCTTCGGAGTCACCAACGAAGACCATCAGGAGTCGCCAGGCTAGTAGAATACCACATTCACCGGTCAGGACCAGAACCCCTAGTCGTGGTAATACACCAAGTCCAAAACATACAGCAAAGACTGCTCAAACTTCTCCAAAACTAACTCCTAAGCTGCCACCTACAGCCAGGAATACCTGGGGAGGTAGGACCGCTCCTACTCAGTCTAAGGCGAAATCCAGGCCTGCAATTGGAGCTGACACGTTCGAGAATCCAAACAGGTCCCCCAAACCAACCCCTAGAGCCTCCCCAGATGCCTTTAAGAGAAATTCACCTCTGAGAGCTAGCAGTGCAACTTTAAGGTCCCCACCGAACCAAAAGCCTCTCAGTCCTTTGCTGGAACAGATCTTGAGGTCAGCAGAAACTGCTAAAGATGACGCAAGCGTTCTGGAGAAGATGAAGGAGATAATTAGGACTTACTCAAAAGGAGACGACTCTTTATCCAGGACCAGCTCCAAGGATTCAGATTACGCTGATTTTACATCAGCCTGGGTGATGTCAGATGGGAAGCTCGAGAGGTCGATGAGCACTAGGCAGTTGTCGTCTCCGAGGAAAGACCAGAGGAACGGAGCCTCTCGCATACCGGCTCCAGTCTCCATTGGGTGCAGACGGTCCACCTCAACTTCGCAGTTCCAATGA
Protein
MASAGAVLLEARPFRPFKSSEEYLYAMKEDLAEWLTVLYPELRITADNFLDRLDTGVALCRHANAVRDSAKLILDAPQPEAEDAIILAKALRSRPPVNMLPAAKAGTFFARDNLSNFIDWCRKALGILECLLFETDDLCLRKNEKHVVLCLLEVARKGAVLGMPAPLLVQMEKQIERELAGEELRPDDSALGLTVPTGPQPQLVTNDLRSLDERVRDLVERCSCPTQFPMVRVSEGKYRIGDTRMLIFVRILRSHVMVRVGGGWDTLAHYLDKHDPCRCKAQHRTSLSARLARPKHDLVGATVTYERPDPGPTSLPYSKEKNDRYEPTSLQYHEERHYTSTNRLNEPTSLPYLETERSHSPSRKLLAPRSISPGRKSSSPDRRTKIVPSNHLVPTPLGLRNKSPRPVSPAPAAESASDNGSEVSDEGYRSLGVVAGSTQGSPSTKALNRYSLHSQNSIEDAEFNERLDQDDGCHMDKGDRDDYVSISTGLRKTDFSDTFYGSRKTSSVDEKSIRGSPEKIVVVENNDAPSKSLRPSRGASESPTKTIRSRQASRIPHSPVRTRTPSRGNTPSPKHTAKTAQTSPKLTPKLPPTARNTWGGRTAPTQSKAKSRPAIGADTFENPNRSPKPTPRASPDAFKRNSPLRASSATLRSPPNQKPLSPLLEQILRSAETAKDDASVLEKMKEIIRTYSKGDDSLSRTSSKDSDYADFTSAWVMSDGKLERSMSTRQLSSPRKDQRNGASRIPAPVSIGCRRSTSTSQFQ

Summary

Uniprot
A0A2A4JQM2   A0A3S2TEU5   A0A212FM50   A0A194Q6B3   A0A0L7LS87   A0A1L8DHS8   + More
A0A336LM39   A0A1Y1KHQ7   A0A1Y1KHZ4   A0A139WGX5   A0A182VCN6   Q7QJZ5   A0A2M4CW17   A0A1Q3FX78   A0A1Q3FWR9   A0A1Q3FWT2   A0A182RBW4  
Pubmed
22118469    26354079    26227816    28004739    18362917    19820115    + More
12364791    14747013    17210077   
EMBL
NWSH01000763    PCG74355.1    RSAL01000219    RVE44078.1    AGBW02007654    OWR54834.1    + More
KQ459582    KPI98950.1    JTDY01000202    KOB78312.1    GFDF01008078    JAV06006.1    UFQS01000056    UFQT01000056    SSW98746.1    SSX19132.1    GEZM01083837    JAV60993.1    GEZM01083836    JAV60994.1    KQ971345    KYB27057.1    AAAB01008805    EAA03880.5    GGFL01005356    MBW69534.1    GFDL01002959    JAV32086.1    GFDL01002991    JAV32054.1    GFDL01002964    JAV32081.1   
Proteomes
UP000218220    UP000283053    UP000007151    UP000053268    UP000037510    UP000007266    + More
UP000075903    UP000007062    UP000075900   
Pfam
PF02187   GAS2        + More
PF00307   CH
Interpro
IPR036872   CH_dom_sf        + More
IPR036534   GAR_dom_sf       
IPR003108   GAR_dom       
IPR001715   CH-domain       
SUPFAM
SSF143575   SSF143575        + More
SSF47576   SSF47576       
Gene 3D
1.10.418.10     3.30.920.20    
CDD
cd00014  CH
ProteinModelPortal
A0A2A4JQM2   A0A3S2TEU5   A0A212FM50   A0A194Q6B3   A0A0L7LS87   A0A1L8DHS8   + More
A0A336LM39   A0A1Y1KHQ7   A0A1Y1KHZ4   A0A139WGX5   A0A182VCN6   Q7QJZ5   A0A2M4CW17   A0A1Q3FX78   A0A1Q3FWR9   A0A1Q3FWT2   A0A182RBW4  
PDB
1V5R     E-value=7.58159e-14,     Score=190

Ontologies

KEGG
101741675    no KO assigned | (RefSeq) GAS2-like protein 1
GO
GO:0008093   GO:0005856   GO:0008017   GO:0005515   GO:0006508   GO:0015074   GO:0004672   GO:0005524   GO:0006468   GO:0006418   GO:0000049   GO:0016876  

Topology

Length:
763
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00263
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00014
outside
1  -  763
 
 

Population Genetic Test Statistics

Pi
257.009956
Theta
183.961292
Tajima's D
1.144818
CLR
0.243897
CSRT
0.696765161741913
Interpretation
Uncertain
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