Gene

KWMTBOMO09390  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013096

Annotation

PREDICTED:_serine/arginine-rich_splicing_factor_1A_[Bombyx_mori]

Location

Bomo_Chr16(-):348348-350756      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.159

CDS

ATGTCGGGTGGAAGCAGTAGCAACAGAAATGAGTGTCGTATATATGTTGGAAACTTACCACCGGACATAAGGACAAAGGATATTCAAGACTTGTTTTACAAGTTCGGAAAAGTAACGTTCGTTGACCTAAAGAACAGAAAAGGTCCGCCATTCGCGTTCGTGGAATTTGAGGATCCCAGAGATGCAGATGATGCAGTAAGAGCCAGGGATGGTTACGACTATGATGGGTACCGTCTTCGAGTCGAGTTCCCTCGTGGAGGTGGAGGTGGAGGCTCTCGTGGTTCTCGAGGCGGTGGTGACCGTTGGGGTGGACGAGGGGCAGCACGTGGTCCGCCCGCTCGACGCTCTGAATACCGCGTGCTCGTTACCGGCTTACCGCCCTCGGGTTCCTGGCAGGACCTCAAAGACCATATGCGAGAGGCCGGCGACGTATGCTTTGCAGACACCTTTAAAGATGGATCTGGTGTTGTGGAATTTTTGAGGCATGAAGATATGAAGTATGCTGTTAAAAAGTTAGATGATTCTAGATTTAGGAGTCATGAGGGTGAGGTGACATATATACGTGTGAAGGAAGACTATGGCGGTGGCGGCGGTGGCGGTGGTGGCGGCGGCGGTGACAGGTACCACTACATACCATTACTACATTAA

Protein

MSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEDPRDADDAVRARDGYDYDGYRLRVEFPRGGGGGGSRGSRGGGDRWGGRGAARGPPARRSEYRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSGVVEFLRHEDMKYAVKKLDDSRFRSHEGEVTYIRVKEDYGGGGGGGGGGGGDRYHYIPLLH

Uniprot

H9JU84   A0A2H1VM88   A0A0N1PGK4   S4PE80   A0A212FM58   A0A2A4K8P2   + More
A0A3S2LBF8   A0A194Q1U4   T1HMY8   A0A0P4VNT0   A0A0V0GCL7   A0A023F4F9   A0A1W4XMQ3   B3M2I4   A0A1S4EH42   A0A3B0JVS9   D2A425   Q295V2   B4GFN0   A0A1B0CY47   A0A0R1E343   A0A1W4W2F8   A0A1B0D810   N6U182   A0A0M4EL03   A0A1L8DGZ8   A0A1L8DGV9   A0A0L7QTY0   A0A0K8TN22   A0A151ITN5   F4WEB5   A0A195BEN1   A0A195FI29   A0A158NB81   A0A151WEL6   A0A1L8DH19   A0A026WSC5   A0A1W4WED1   B4PR10   B4IBX5   B3P110   Q9V3W7   A0A2R5L4L4   A0A0Q9XAJ6   A0A2A3EDA7   A0A088AS03   B4JHC3   B4K5R9   B4LWU3   B7QKF8   A0A154PMI8   A0A293MY93   A0A1Z5LEI7   A0A0M9A9D6   Q176A9   K7ITT3   A0A411G7T0   A0A1B6KM70   V5IHP3   A0A443SN36   A0A182GHU0   A0A1B6D700   A0A182INY4   A0A1B6FC20   B4NIN5   A0A1B6DP01   A0A023EKM0   A0A232EZ28   A0A084WAJ6   A0A182JT72   A0A224YTC7   A0A131Z004   L7LRV3   A0A131XCS1   A0A0T6AYR0   T1E7C3   A0A2M3ZAJ3   A0A2M4AQL2   A0A2M4BZ12   W5JTE9   A0A023GG86   G3MQR4   A0A1E1XUR2   A0A023FJM2   A0A1E1XHY3   A0A182SHP4   A0A182UXG1   A0A182TRJ1   A0A182LPW7   A0A182WUX0   A0A1S4H467   A0A023FXP3   F0J9C5   A0A182QAC5   A0A1B0GDL9   A0A1A9YRR7   A0A1A9UF21   A0A1B0B490   A0A1A9ZR17   D3TKW0  

Pubmed

19121390    26354079    23622113    22118469    27129103    25474469    + More
17994087    18362917    19820115    15632085    17550304    23537049    26369729    21719571    21347285    24508170    10731132    11158320    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    28528879    17510324    20075255    25765539    26483478    24945155    28648823    24438588    28797301    26830274    25576852    28049606    20920257    23761445    22216098    29209593    28503490    20966253    12364791    21362191    20353571   

EMBL

BABH01004246    ODYU01003156    SOQ41552.1    KQ460635    KPJ13414.1    GAIX01004652    + More
JAA87908.1    AGBW02007654    OWR54844.1    NWSH01000045    PCG80274.1    RSAL01000280    RVE43051.1    KQ459582    KPI98964.1    ACPB03002878    GDKW01001975    JAI54620.1    GECL01000314    JAP05810.1    GBBI01002311    JAC16401.1    CH902617    EDV43437.1    OUUW01000008    SPP84522.1    KQ971348    EFA05604.1    CM000070    EAL28606.2    CH479182    EDW34415.1    AJWK01035466    CM000160    KRK03661.1    AJVK01027192    APGK01053536    KB741224    ENN72312.1    CP012526    ALC45877.1    GFDF01008470    JAV05614.1    GFDF01008469    JAV05615.1    KQ414736    KOC62108.1    GDAI01002278    JAI15325.1    KQ981001    KYN10425.1    GL888102    EGI67553.1    KQ976509    KYM82620.1    KQ981606    KYN39644.1    ADTU01000160    KQ983238    KYQ46318.1    GFDF01008336    JAV05748.1    KK107119    EZA58561.1    EDW97332.1    CH480827    EDW44883.1    CH954181    EDV49129.1    AF232773    AE014297    AF234157    AY051919    AAF43413.1    AAF55300.1    AAF60294.1    AAK93343.1    AFH06457.1    GGLE01000328    MBY04454.1    CH933806    KRG01399.1    KZ288271    PBC29753.1    CH916369    EDV93830.1    EDW15131.1    CH940650    EDW66664.1    ABJB010418017    ABJB010498333    DS959525    EEC19330.1    KQ434980    KZC13095.1    GFWV01020748    MAA45476.1    GFJQ02001151    JAW05819.1    KQ435710    KOX79897.1    CH477391    EAT41949.1    MH366106    QBB01915.1    GEBQ01027428    JAT12549.1    GANP01004587    JAB79881.1    NCKV01001145    RWS28937.1    JXUM01064749    KQ562313    KXJ76167.1    GEDC01019472    GEDC01018647    GEDC01015839    GEDC01012628    GEDC01003284    JAS17826.1    JAS18651.1    JAS21459.1    JAS24670.1    JAS34014.1    GECZ01022286    GECZ01003944    JAS47483.1    JAS65825.1    CH964272    EDW83749.1    GEDC01009882    JAS27416.1    JXUM01148092    GAPW01003870    KQ570503    JAC09728.1    KXJ68348.1    NNAY01001526    OXU23682.1    ATLV01022200    KE525330    KFB47240.1    GFPF01005934    MAA17080.1    GEDV01003960    JAP84597.1    GACK01010762    JAA54272.1    GEFH01003127    JAP65454.1    LJIG01022547    KRT79997.1    GAMD01003172    JAA98418.1    GGFM01004739    MBW25490.1    GGFK01009567    MBW42888.1    GGFJ01009010    MBW58151.1    ADMH02000540    GGFL01004581    ETN66014.1    MBW68759.1    GBBM01002437    JAC32981.1    JO844215    AEO35832.1    GFAA01000645    JAU02790.1    GBBK01003589    JAC20893.1    GFAC01000286    JAT98902.1    AAAB01008933    GBBL01001837    JAC25483.1    BK007476    DAA34416.1    AXCN02001767    CCAG010011953    JXJN01008218    EZ422047    ADD18470.1   

Proteomes

UP000005204    UP000053240    UP000007151    UP000218220    UP000283053    UP000053268    + More
UP000015103    UP000192223    UP000007801    UP000079169    UP000268350    UP000007266    UP000001819    UP000008744    UP000092461    UP000002282    UP000192221    UP000092462    UP000019118    UP000092553    UP000053825    UP000078492    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000053097    UP000001292    UP000008711    UP000000803    UP000009192    UP000242457    UP000005203    UP000001070    UP000008792    UP000001555    UP000076502    UP000053105    UP000008820    UP000002358    UP000288716    UP000069940    UP000249989    UP000075880    UP000007798    UP000215335    UP000030765    UP000075881    UP000000673    UP000075901    UP000075903    UP000075902    UP000075882    UP000076407    UP000075886    UP000092444    UP000092443    UP000078200    UP000092460    UP000092445   

PRIDE

H9JU84    Q9V3W7   

Pfam

PF00076   RRM_1

Interpro

IPR034520   SRSF1_RRM1        + More
IPR029538   SRSF1       
IPR035979   RBD_domain_sf       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12597  RRM1_SRSF1

ProteinModelPortal

H9JU84   A0A2H1VM88   A0A0N1PGK4   S4PE80   A0A212FM58   A0A2A4K8P2   + More
A0A3S2LBF8   A0A194Q1U4   T1HMY8   A0A0P4VNT0   A0A0V0GCL7   A0A023F4F9   A0A1W4XMQ3   B3M2I4   A0A1S4EH42   A0A3B0JVS9   D2A425   Q295V2   B4GFN0   A0A1B0CY47   A0A0R1E343   A0A1W4W2F8   A0A1B0D810   N6U182   A0A0M4EL03   A0A1L8DGZ8   A0A1L8DGV9   A0A0L7QTY0   A0A0K8TN22   A0A151ITN5   F4WEB5   A0A195BEN1   A0A195FI29   A0A158NB81   A0A151WEL6   A0A1L8DH19   A0A026WSC5   A0A1W4WED1   B4PR10   B4IBX5   B3P110   Q9V3W7   A0A2R5L4L4   A0A0Q9XAJ6   A0A2A3EDA7   A0A088AS03   B4JHC3   B4K5R9   B4LWU3   B7QKF8   A0A154PMI8   A0A293MY93   A0A1Z5LEI7   A0A0M9A9D6   Q176A9   K7ITT3   A0A411G7T0   A0A1B6KM70   V5IHP3   A0A443SN36   A0A182GHU0   A0A1B6D700   A0A182INY4   A0A1B6FC20   B4NIN5   A0A1B6DP01   A0A023EKM0   A0A232EZ28   A0A084WAJ6   A0A182JT72   A0A224YTC7   A0A131Z004   L7LRV3   A0A131XCS1   A0A0T6AYR0   T1E7C3   A0A2M3ZAJ3   A0A2M4AQL2   A0A2M4BZ12   W5JTE9   A0A023GG86   G3MQR4   A0A1E1XUR2   A0A023FJM2   A0A1E1XHY3   A0A182SHP4   A0A182UXG1   A0A182TRJ1   A0A182LPW7   A0A182WUX0   A0A1S4H467   A0A023FXP3   F0J9C5   A0A182QAC5   A0A1B0GDL9   A0A1A9YRR7   A0A1A9UF21   A0A1B0B490   A0A1A9ZR17   D3TKW0  

PDB

1X4C     E-value=3.06351e-29,     Score=317

KEGG

101743319    K12890 splicing factor, arginine/serine-rich 1 | (RefSeq) serine/arginine-rich splicing factor 1A

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723   GO:0003677   GO:0000381   GO:0005634   GO:0031440   GO:0006405   GO:0001178   GO:0003729   GO:0016607   GO:0045292   GO:0071011   GO:0071013   GO:0000398   GO:0010468   GO:0003676   GO:0000166   GO:0008289   GO:0016849   GO:0004672   GO:0005524   GO:0006468   GO:0006418   GO:0000049   GO:0016876  

PANTHER

PTHR23147:SF44  

Length:

215

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0005

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08697

outside

1  -  215

 

 

Pi

20.735654

Theta

41.924984

Tajima's D

-1.648491

CLR

0

CSRT

0.0430478476076196

Interpretation

Uncertain