Gene

KWMTBOMO09381  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013100

Annotation

hypothetical_protein_KGM_15381_[Danaus_plexippus]

Location

Bomo_Chr16(-):247790-249445      View in EpiBrowser

Full name

Small nuclear ribonucleoprotein Sm D3      

Alternative Name

snRNP core protein D3

Location in the cell

Nuclear   Reliability : 3.089

CDS

ATGTCTATCGGTGTGCCTATTAAAGTACTTCACGAGGCGGAAGGTCATGTAGTGACTTGTGAAACAAATACCGGTGAAGTTTATAGAGGGAAATTAATTGAAGCTGAGGATAATATGAATTGCCAAATGACTCTCGTAACAGTCACATACAGAGATGGCCGAGTTGCACAGCTCGAGAATGTGTACATCCGTGGTTCCAAGATCAGATTTTTAATATTACCGGACATGTTGAAGAACGCGCCAATGTTCAAAAGACAAGGGAATAAACCTACTGCAGGACGAGGGAAGAGTGCGATACTGCGAGCCCAAGCTGCTGGTCGAGGACGAGCAGGTGGAAGAGGTGGGGGCCACCGTGGAGGCTGGCAAGGTGGGTCAGGACCATCTCGACGCTAG

Protein

MSIGVPIKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGSKIRFLILPDMLKNAPMFKRQGNKPTAGRGKSAILRAQAAGRGRAGGRGGGHRGGWQGGSGPSRR

Similarity

Belongs to the snRNP core protein family.

Uniprot

A0A212FM85   A0A2W1BRJ0   A0A2A4IYI9   H9JU88   S4PBH8   A0A437AY24   + More
A0A0N1IE39   I4DLG9   A0A0L7LEA4   A0A2J7R7Z1   A0A067REK6   R4WQS7   A0A0T6B7F5   D2A4U7   W4Z7B1   A0A224XNQ3   A0A0P4VKE2   A0A0V0G8Z7   A0A170YEP7   A0A069DPB6   R4G3L6   E2C9H4   A0A232F610   K7J120   E2C9H5   A0A0C9RS67   A0A2R7WQF9   A0A1Y1L5C9   E9J0Y6   A0A1B6FD24   A0A1B6IDJ7   A0A131Y0J4   B7Q5H5   A0A023GEQ3   G3MR61   A0A182J1T7   A0A1W4XFJ3   T1J1C3   A0A1E1XUQ2   A0A0C9S0G4   A0A023FGA0   A0A023FWG1   A0A1E1WZ63   A0A084WIC2   A0A1B0DBS6   A0A224Z8Q6   A0A131YTB5   L7M666   A0A131XFX2   A0A182QPC3   A0A182Y1J5   A0A182PKB8   A0A182MLH3   A0A182T7D8   A0A182JXE4   A0A182TU32   A0A182WZR7   A0A182KSD1   Q7Q0C0   A0A182RFF6   A0A182HQB2   A0A1L8DGZ9   A0A0N1ITG1   A0A0J7L3S1   E2A5P6   A0A336N545   A0A1B0C8E9   A0A195C4K5   F4WA43   A0A195BWM1   A0A158NI81   A0A151XBG1   U5EZK2   F4WCL3   A0A195DGA0   A0A182GBX2   N6TBK7   A0A195ESS8   U4UD74   E9HJU3   K1QVD0   A0A0P6IQZ6   A0A1B6KBE1   A0A0P5HES0   A0A026WW79   A0A2M3ZJG5   A0A1Q3F026   A0A146M0T9   J3JZI0   A0A023EF80   A0A195ETT4   A0A0A9YTY0   B0WEA6   A0A182H5A6   A0A164Y9Y1   Q16Q31   T1DEV6   A0A2M4ANR6   A0A182FBA9   A0A154PA99  

Pubmed

22118469    28756777    19121390    23622113    26354079    22651552    + More
26227816    24845553    23691247    18362917    19820115    27129103    26334808    20798317    28648823    20075255    28004739    21282665    22216098    29209593    26131772    28503490    24438588    28797301    26830274    25576852    28049606    25244985    20966253    12364791    14747013    17210077    21719571    21347285    26483478    23537049    21292972    22992520    24508170    30249741    26823975    22516182    24945155    25401762    17510324   

EMBL

AGBW02007654    OWR54853.1    KZ149997    PZC75400.1    NWSH01004648    PCG64821.1    + More
BABH01004264    GAIX01005902    JAA86658.1    RSAL01000280    RVE43062.1    KQ460635    KPJ13426.1    AK402137    KQ459582    BAM18759.1    KPI98975.1    JTDY01001557    KOB73536.1    NEVH01006723    PNF36936.1    KK852685    KDR18508.1    AK418021    BAN21236.1    LJIG01009334    KRT83288.1    KQ971344    EFA05269.2    AAGJ04018024    AAGJ04018025    AAGJ04018026    GFTR01002290    JAW14136.1    GDKW01001804    JAI54791.1    GECL01002194    JAP03930.1    GEMB01003367    JAR99847.1    GBGD01003427    JAC85462.1    ACPB03031115    GAHY01002100    JAA75410.1    GL453862    EFN75404.1    NNAY01000922    OXU25888.1    EFN75405.1    GBYB01011470    JAG81237.1    KK855283    PTY21807.1    GEZM01063967    JAV68889.1    GL767538    EFZ13606.1    GECZ01021653    JAS48116.1    GECU01022698    JAS85008.1    GEFM01003784    JAP72012.1    ABJB010983052    DS861388    EEC14097.1    GBBM01003089    JAC32329.1    JO844362    AEO35979.1    JH431783    GFAA01000655    JAU02780.1    GBZX01002656    JAG90084.1    GBBK01004312    JAC20170.1    GBBL01002320    JAC25000.1    GFAC01006855    JAT92333.1    ATLV01023928    KE525347    KFB49966.1    AJVK01004880    GFPF01011794    MAA22940.1    GEDV01006709    JAP81848.1    GACK01006460    JAA58574.1    GEFH01004035    JAP64546.1    AXCN02001021    AXCM01003135    AAAB01008986    EAA00211.2    APCN01003305    GFDF01008361    JAV05723.1    KQ435798    KOX73321.1    LBMM01000880    KMQ97301.1    GL437023    EFN71243.1    UFQS01002503    UFQT01002089    UFQT01002503    SSX14172.1    SSX32625.1    SSX33588.1    AJWK01000531    KQ978292    KYM95540.1    GL888037    EGI68973.1    KQ976398    KYM92680.1    ADTU01001780    KQ982327    KYQ57687.1    GANO01000643    JAB59228.1    GL888070    EGI68193.1    KQ980905    KYN11499.1    JXUM01053503    KQ561779    KXJ77572.1    APGK01044225    KB741021    ENN75088.1    KQ981979    KYN31288.1    KB632003    ERL87865.1    GL732664    EFX68011.1    JH818113    EKC40827.1    GDIQ01002903    JAN91834.1    GEBQ01031204    JAT08773.1    GDIQ01228920    JAK22805.1    KK107078    QOIP01000011    EZA60277.1    RLU17091.1    GGFM01007925    MBW28676.1    GFDL01014156    JAV20889.1    GDHC01005188    JAQ13441.1    BT128662    AEE63619.1    GAPW01005636    JAC07962.1    KYN31289.1    GBHO01009056    JAG34548.1    DS231907    EDS45466.1    JXUM01111144    KQ565475    KXJ70930.1    LRGB01000930    KZS15034.1    CH477765    EAT36478.1    GAMD01003371    JAA98219.1    GGFK01009076    MBW42397.1    KQ434857    KZC08829.1   

Proteomes

UP000007151    UP000218220    UP000005204    UP000283053    UP000053240    UP000053268    + More
UP000037510    UP000235965    UP000027135    UP000007266    UP000007110    UP000015103    UP000008237    UP000215335    UP000002358    UP000001555    UP000075880    UP000192223    UP000030765    UP000092462    UP000075886    UP000076408    UP000075885    UP000075883    UP000075901    UP000075881    UP000075902    UP000076407    UP000075882    UP000007062    UP000075900    UP000075840    UP000053105    UP000036403    UP000000311    UP000092461    UP000078542    UP000007755    UP000078540    UP000005205    UP000075809    UP000078492    UP000069940    UP000249989    UP000019118    UP000078541    UP000030742    UP000000305    UP000005408    UP000053097    UP000279307    UP000002320    UP000076858    UP000008820    UP000069272    UP000076502   

PRIDE

H9JU88   

Pfam

PF01423   LSM

Interpro

IPR001163   LSM_dom_euk/arc        + More
IPR034099   SmD3       
IPR010920   LSM_dom_sf       
IPR027141   LSm4/Sm_D1/D3       

SUPFAM

SSF50182   SSF50182       

CDD

cd01721  Sm_D3

ProteinModelPortal

A0A212FM85   A0A2W1BRJ0   A0A2A4IYI9   H9JU88   S4PBH8   A0A437AY24   + More
A0A0N1IE39   I4DLG9   A0A0L7LEA4   A0A2J7R7Z1   A0A067REK6   R4WQS7   A0A0T6B7F5   D2A4U7   W4Z7B1   A0A224XNQ3   A0A0P4VKE2   A0A0V0G8Z7   A0A170YEP7   A0A069DPB6   R4G3L6   E2C9H4   A0A232F610   K7J120   E2C9H5   A0A0C9RS67   A0A2R7WQF9   A0A1Y1L5C9   E9J0Y6   A0A1B6FD24   A0A1B6IDJ7   A0A131Y0J4   B7Q5H5   A0A023GEQ3   G3MR61   A0A182J1T7   A0A1W4XFJ3   T1J1C3   A0A1E1XUQ2   A0A0C9S0G4   A0A023FGA0   A0A023FWG1   A0A1E1WZ63   A0A084WIC2   A0A1B0DBS6   A0A224Z8Q6   A0A131YTB5   L7M666   A0A131XFX2   A0A182QPC3   A0A182Y1J5   A0A182PKB8   A0A182MLH3   A0A182T7D8   A0A182JXE4   A0A182TU32   A0A182WZR7   A0A182KSD1   Q7Q0C0   A0A182RFF6   A0A182HQB2   A0A1L8DGZ9   A0A0N1ITG1   A0A0J7L3S1   E2A5P6   A0A336N545   A0A1B0C8E9   A0A195C4K5   F4WA43   A0A195BWM1   A0A158NI81   A0A151XBG1   U5EZK2   F4WCL3   A0A195DGA0   A0A182GBX2   N6TBK7   A0A195ESS8   U4UD74   E9HJU3   K1QVD0   A0A0P6IQZ6   A0A1B6KBE1   A0A0P5HES0   A0A026WW79   A0A2M3ZJG5   A0A1Q3F026   A0A146M0T9   J3JZI0   A0A023EF80   A0A195ETT4   A0A0A9YTY0   B0WEA6   A0A182H5A6   A0A164Y9Y1   Q16Q31   T1DEV6   A0A2M4ANR6   A0A182FBA9   A0A154PA99  

PDB

4WZJ     E-value=2.6873e-43,     Score=434

KEGG

101744663    K11088 small nuclear ribonucleoprotein D3 | (RefSeq) small nuclear ribonucleoprotein Sm D3

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005687   GO:0005681   GO:0034719   GO:0005685   GO:0034715   GO:0000387   GO:0005686   GO:0005682   GO:0005689   GO:0071013   GO:0003723   GO:0000243   GO:0016021  

PANTHER

PTHR23338  

Subcellular location

Nucleus  

Length:

130

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00029

Exp number, first 60 AAs:

3e-05

Total prob of N-in:

0.07045

outside

1  -  130

 

 

Pi

25.504424

Theta

15.625674

Tajima's D

-0.650941

CLR

2.866933

CSRT

0.205789710514474

Interpretation

Uncertain