Silkworm Genome Informatics Database

Gene

KWMTBOMO09373 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA013108

Annotation

apolipophorin_III_precursor_[Bombyx_mori]

Location

Bomo_Chr16(-):33596-40835 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.281

CDS

ATGGATGTGCGGTCGAGCAGGAGTACTTTGAGTGAGCAGGAGTTGATTGGTGATGAGGTAGAACAATTTCAAGAAGAGAATTCTATGCAAGAGATGAATGCGATGGAGGATTGGTTAAGACCAGAGAAGAGAAAAGATGTCAACAGTGACGATGAATGGACAACGATTAAATCGAAGCAGAAGAAGCTTAAACCGGAAGTTGAGAAAATAGAGATGTACTTAACTGGTATACAAGTGCCCAAAAAGTTTAGTTTCACCGCTACCCCTGCTCCTCCGCTAATGGAGTACATCTCATCCGTGCCACCAAAAACCTTGCAGAGTAACGCACCGACTTTTGCTAGCGTCTTACAGACAAAAGCGGAGATTCACATCGAAGAAAACGCTAAACAAACACCAAGATCGGTTTCGAAAAAACAACGTCGTCGTCGTAGGGAGCCTGATGTATCTGTATTGGACTCTGCTGCTGAAGCTGAAATAGAAGAGATGCCCGGGAAAAATGTGCCTCTGGAACAGAAGGAAAGAAGAAATGGCGCGGGCCGCAACAAGCCCTCGGGAGGAGGCCGGCCTTATCGCGCTCGTTATCAGCCGCGCCGGGTATATATAGCCCGTCCCGGCCGTAACCAGCACACACTCCTCTGTGTTGCAGTCCGGTTCGCATCTCCTCCGCACTCAGTCTCTCGACAGCACATCATGGCCGCCAAGTTCGTAGTTCTCTTCGCCTGCATCGCTCTGGCCCAAGGAGCGATGGTGCGACGCGACGCTCCCGACTTCTTCAAGGACATCGAACACCACACCAAGGAGTTCCATAAGACTTTAGAACAACAGTTTAACTCGCTCACCAAGTCAAAGGACGCACAGGACTTCAGCAAGGCTTGGAAGGACGGCTCCGAGTCCGTGCTGCAACAGCTCAACGCCTTCGCCAAGAGTCTCCAGGGAGCGCTCGGAGACGCGAACGGCAAGGCCAAGGAGGCTTTGGAACAGTCGAGGCAGAACATCGAGCGCACGGCCGAGGAGCTCCGCAAGGCCCACCCTGACGTCGAGAAGAACGCCACCGCCCTCCGCGAGAAGCTGCAGGCCGCCGTGCAGAACACCGTGCAGGAATCCCAGAAGTTAGCGAAGAAGGTGTCCTCGAACGTGCAGGAGACTAATGAGAAACTGGCGCCCAAGATCAAGGCCGCCTACGACGACTTCGCGAAGAACACCCAGGAGGTGATCAAGAAGATCCAGGAGGCCGCCAACGCCAAGCAGTGA

Protein

MDVRSSRSTLSEQELIGDEVEQFQEENSMQEMNAMEDWLRPEKRKDVNSDDEWTTIKSKQKKLKPEVEKIEMYLTGIQVPKKFSFTATPAPPLMEYISSVPPKTLQSNAPTFASVLQTKAEIHIEENAKQTPRSVSKKQRRRRREPDVSVLDSAAEAEIEEMPGKNVPLEQKERRNGAGRNKPSGGGRPYRARYQPRRVYIARPGRNQHTLLCVAVRFASPPHSVSRQHIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ

Uniprot

NA

ProteinModelPortal

NA

PDB

1EQ1 E-value=8.18738e-43, Score=437

KEGG

692632 no KO assigned | (RefSeq) apolipophorin III

GO

GO:0005576 GO:0006869 GO:0008289 GO:0016849 GO:0004672 GO:0005524 GO:0006468 GO:0006418 GO:0000049 GO:0016876

Length:

416

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.28121

Exp number, first 60 AAs:

0

Total prob of N-in:

0.19112

outside

1 - 416

Pi

11.182273

Theta

10.387035

Tajima's D

-1.040926

CLR

0.087475

CSRT

0.125193740312984

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
20822545	DAPDFFKDIEHHTK	100.00	7e-04
20822545	VSSNVQETNEKLAPK	100.00	0.001
20822545	DGSESVLQQLNAFAK	100.00	0.001
26822097	TIEQQFNSITK	100.00	0.001
25860555	SNVPHDPVRECVYIGPGTIIQIDSER	100.00	0.001
26280517	IIQSIFYTENEEIGAK	100.00	0.001
25044914	DAPDFFK	100.00	0.001
24402669	DAPDFFK	100.00	0.001
27102218	TIEQQFNSITK	100.00	0.001
28467696	DAPDFFK	100.00	0.001
29197581	IDSITSSR	100.00	0.001
20149871	YVVDCDYQPK	100.00	0.002
20822545	LQAAVQNTVQESQK	100.00	0.002
20822545	LQAAVQNTVQESQK	100.00	0.002
28556443	DGSESVLQQLNAFAK	100.00	0.002
28556443	AAYDDFAK	100.00	0.002
28556443	LVDKLL	100.00	0.002
20822545	DAPDFFKDIEHHTK	100.00	0.003
20822545	DGSESVLQQLNAFAK	100.00	0.004
20822545	TLEQQFNSLTK	100.00	0.039

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics