Gene

KWMTBOMO09363  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002162

Annotation

PREDICTED:_protocadherin-16_[Bombyx_mori]

Location

Bomo_Chr15(-):18130278-18143794      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.24

CDS

ATGAATGGCGGCGCCGTGGAGAGCTTCTTCATCAGCGAGGACACACCCATCGGCAGTATTATAGGTACCTTAAGTGTAAATGGAGATCCTTCAGAAGACCTTGGAGACATCACCCTTCGGCTTCAAGAAAAGGGAGCAGCAGTAGGCATAGTGCCTGGTAGCAAGAACTTGACACTGCTCAGAGCTTTGGATCGAGAGGAGAAAATCGGCCCTTCTAATGTATACGTTAATGTACGGTGTGACAGAAGACGAACTACTGATCCGAGCTTCGTGATCCCGGTGTCGGTGCGCGTGTGGGACGTTAACGACAACGCGCCGCAGTGGGAGGGCGCGCCGTACGCCGTGCGGGTGTCGGAGACGGCGGCGAGGGGCGCGCGGGCGGCGGCCGTGCGCGCCTCCGACCGCGACCAGCCCGGCCCGCACTCCGCGCTGCACTACGCCGTGCTGCCCGGACCGCATTCCGAATATTTAGGTTTTGAAAATGAACTAGAACCAATAATAGTAGTTAAGAAGCCTCTGGACTTTGAGACAGTAAACAACTTCACAATAAAGCTCAGGGTACAAGACCAGGGCTCTCCTCCGCTGTACAGCGATACCACCCTGCAGGTCACAGTGCTGGATGCCGACGATCAGAACCCTAAGTTTACCTACGAACATTACACAGCTCTGCTGCCAGATGATGCTGAGGAGGGCACATTCCTCACGACCTCTCCCGGGCCGATATCAGCAGCCGACCAAGACTTGGGCATCAATGCTCCGCTGCAGTACTCCAGCACGGGAGACCACAAACAACTGATTGTCGTCAATAAGGACACTGGCCAGGTCGCCGCTACTAAACAGCTGATCGCAGAGTTGGATCCCTCCGTCACTATTGTTTTAAAAGCAACACAAGTGGATAATCCAGATCGGTACGCGTTAGCGACGCTTACCATCCGTAGTACCACACCACGATCTTCCACTCCGCCCATCAGCAGGCTTCAGTTCACCCAGAAGCAGTACTCGACCACAGTCAGTGAAGGAGCCTCGCCAGGATCCGTGCTCCTGACCCTAACCACCGTGCCACAAAATACAGAATTTAGGGAGAGTCCACTACAGTTCTACGTATCAGACCGCAGCTTCTTGGATAAATTTGCCATCAACAACGCCGGTGAAGTCATACTTAGGAGATCCCTTGACTATGAAACTACGTCCAATTACTTCTACCAAGTTATGGTCACTGACTCTATATCAAATGACACAGCATCAATAAACATAAGCGTGGAGGACGTGAATGAGTGGGAGCCGCGGTTCCGACACCCGCAGTACGAGTTCGAGGTGGAGGCGGCGGGGGGCGGGGCGGGGGAGGCGGCGGGGGGGCTGCGCGTGGGCCGGCTGGTGGCGCACGACGGGGACGCCGGCACGCTCGCGCTCAGCCTCGCCGGGCAGCACGCGCGTATGTTCTACATTAATGCCAGCGGAGATTTATTCCTGCGGGAGGAAGCGATCGGAAATTTAAACTCGTCATCTCTACACTTGGTGGCCACTGCTATAGATTCAGGGATTCCTCCACGACAGACATCGGTCCCGGTGACGGTGGTGGTGCGCGGGGCGGGGGGCGCGGCGGGGGGCGCGGTGCGGGGCGCGGGGCTGCTGGCGGCGCTGGTGGCGGCCCTCGCGCTGCTCGCGCTGCTCGTCTGTGGACTCTTCCTCTACATATACACCGCGAAAAAACGTATCAAATCTCCAGCACCGGCTCCACTCAAACCAGCTGGATTCATCAACCACGAGAAATCCCGACCGCTCCCCTCACCCCTGCCCCCCACCCTCCCCGACTCCGGCGCCAACGGCACCAACACTATTGCCAACAATGGCACAGCAACGCTGGCCACCAGCAGCTCCCTGCAGAGTGTCAGCGCCGGGGCTAGTACTATACTAGCCGGCTCTAGCTCCAGTCTTCATATGCCTGACGCTGCCACTAAGCCGTCAAATGGACACGAAGGTGCGAGGAGCGGGGAGGCGCGGCGGGGGGGCGGCGGGGGGGTGGCGCCGGCGGGCGGCGGGCGGGTGGCGCCGGCGGGCGGCGAGTGCGCCATGAGCGACCACCTGCGCGGCGGCGGCGGCGCGCGCTCCGGCGTGGCGTGGCCCGCGCACACCATCCCCGCCACGCTCAAGGCGCTCGCCTGGGACGACCACAACAAACAGAGCAGCGACGCAGAGAGTCCGGTGCACGACGCGACCAACCGCGCGGTCGCCGAGCACATGAACCTCACCGTGTACTTCTGA

Protein

MNGGAVESFFISEDTPIGSIIGTLSVNGDPSEDLGDITLRLQEKGAAVGIVPGSKNLTLLRALDREEKIGPSNVYVNVRCDRRRTTDPSFVIPVSVRVWDVNDNAPQWEGAPYAVRVSETAARGARAAAVRASDRDQPGPHSALHYAVLPGPHSEYLGFENELEPIIVVKKPLDFETVNNFTIKLRVQDQGSPPLYSDTTLQVTVLDADDQNPKFTYEHYTALLPDDAEEGTFLTTSPGPISAADQDLGINAPLQYSSTGDHKQLIVVNKDTGQVAATKQLIAELDPSVTIVLKATQVDNPDRYALATLTIRSTTPRSSTPPISRLQFTQKQYSTTVSEGASPGSVLLTLTTVPQNTEFRESPLQFYVSDRSFLDKFAINNAGEVILRRSLDYETTSNYFYQVMVTDSISNDTASINISVEDVNEWEPRFRHPQYEFEVEAAGGGAGEAAGGLRVGRLVAHDGDAGTLALSLAGQHARMFYINASGDLFLREEAIGNLNSSSLHLVATAIDSGIPPRQTSVPVTVVVRGAGGAAGGAVRGAGLLAALVAALALLALLVCGLFLYIYTAKKRIKSPAPAPLKPAGFINHEKSRPLPSPLPPTLPDSGANGTNTIANNGTATLATSSSLQSVSAGASTILAGSSSSLHMPDAATKPSNGHEGARSGEARRGGGGGVAPAGGGRVAPAGGECAMSDHLRGGGGARSGVAWPAHTIPATLKALAWDDHNKQSSDAESPVHDATNRAVAEHMNLTVYF

Uniprot

H9IY29   A0A437BY62   A0A194Q2C5   A0A212FKE2   A0A1B6IF97   A0A1B6EHK3   + More
A0A2H8TDD0   A0A1I8N9G6   X1WJ38   A0A0L0BZZ6   A0A1A9Z6H2   B4KDJ1   A0A0A9Y7R0   A0A1I8PWZ1   A0A1A9V0C2   A0A1A9WGZ1   A0A0K8UD22   Q293R6   A0A0K8UDJ1   A0A0Q9WMI2   B4PUB2   A0A0M4EMZ3   A0A2S2R9D2   A0A0R3NK77   A0A3B0KDJ2   A0A1W4VMB2   B4JV09   A0A0Q9WF28   A0A1W4VKX6   B3LWI5   B4LZV0   A0A1A9YSK4   Q9VBV6   B4IJI5   A0A146KX84   A0A088ANY8   A0A0L7QN49   K7JAD0   A0A310SCB6   A0A154PNL4   A0A026WSE2   A0A0N0BFM1   A0A336MIQ2   A0A139WIG1   E0VWN8   A0A1B0DFZ1   A0A0T6AX74   A0A1Y1LMF3   E2C1G4   A0A1W4WGP4   A0A195C5Q2   A0A195ELT0   A0A195B5T3   Q172R3   A0A1S4FG21   A0A195ESQ3   A0A0K2TUI5   E2A6H9   A0A087TEE9   A0A1J1HUC9   A0A158NIT4   A0A0P5W7S9   A0A0P5TAJ2   A0A0P4X9N0   A0A182M724   A0A0P6JRU8   A0A2A3ERY1   B0W9C8   A0A182VXH8   A0A182REU1  

Pubmed

19121390    26354079    22118469    25315136    26108605    17994087    + More
25401762    26823975    15632085    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    20075255    24508170    30249741    18362917    19820115    20566863    28004739    20798317    17510324    21347285   

EMBL

BABH01029839    BABH01029840    RSAL01000001    RVE55344.1    KQ459581    KPI99149.1    + More
AGBW02008061    OWR54215.1    GECU01022139    JAS85567.1    GECZ01032371    JAS37398.1    GFXV01000289    MBW12094.1    ABLF02033186    ABLF02033188    JRES01001097    KNC25561.1    CH933806    EDW13825.2    GBHO01015380    GDHC01003997    JAG28224.1    JAQ14632.1    GDHF01027775    JAI24539.1    CM000070    EAL29148.3    GDHF01027676    GDHF01023302    JAI24638.1    JAI29012.1    CH940650    KRF83143.1    CM000160    EDW98799.2    CP012526    ALC46902.1    GGMS01017392    MBY86595.1    KRT01319.1    OUUW01000008    SPP83806.1    CH916374    EDV91329.1    KRF83144.1    CH902617    EDV41579.2    EDW67178.1    AE014297    AAF56421.3    CH480848    EDW51176.1    GDHC01018394    JAQ00235.1    KQ414860    KOC60048.1    AAZX01000433    KQ770827    OAD52576.1    KQ435007    KZC13466.1    KK107119    QOIP01000009    EZA58576.1    RLU18593.1    KQ435796    KOX73538.1    UFQS01001064    UFQT01001064    SSX08801.1    SSX28713.1    KQ971342    KYB27694.1    DS235823    EEB17794.1    AJVK01059138    LJIG01022697    KRT79191.1    GEZM01053554    GEZM01053553    JAV74018.1    GL451937    EFN78140.1    KQ978292    KYM95511.1    KQ978739    KYN28882.1    KQ976582    KYM79846.1    CH477432    EAT41034.1    KQ981979    KYN31263.1    HACA01011705    CDW29066.1    GL437132    EFN70936.1    KK114845    KFM63488.1    CVRI01000021    CRK91613.1    ADTU01001832    ADTU01001833    ADTU01001834    GDIP01090088    JAM13627.1    GDIQ01094590    JAL57136.1    GDIP01244955    JAI78446.1    AXCM01000911    GDIQ01011065    JAN83672.1    KZ288193    PBC34032.1    DS231863    EDS39988.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000007151    UP000095301    UP000007819    + More
UP000037069    UP000092445    UP000009192    UP000095300    UP000078200    UP000091820    UP000001819    UP000008792    UP000002282    UP000092553    UP000268350    UP000192221    UP000001070    UP000007801    UP000092443    UP000000803    UP000001292    UP000005203    UP000053825    UP000002358    UP000076502    UP000053097    UP000279307    UP000053105    UP000007266    UP000009046    UP000092462    UP000008237    UP000192223    UP000078542    UP000078492    UP000078540    UP000008820    UP000078541    UP000000311    UP000054359    UP000183832    UP000005205    UP000075883    UP000242457    UP000002320    UP000075920    UP000075900   

PRIDE

H9IY29    Q9VBV6   

Pfam

PF00028   Cadherin        + More
PF00059   Lectin_C

Interpro

IPR002126   Cadherin-like_dom        + More
IPR015919   Cadherin-like_sf       
IPR020894   Cadherin_CS       
IPR016187   CTDL_fold       
IPR016186   C-type_lectin-like/link_sf       
IPR001304   C-type_lectin-like       

SUPFAM

SSF49313   SSF49313        + More
SSF56436   SSF56436       

Gene 3D

3.10.100.10    

ProteinModelPortal

H9IY29   A0A437BY62   A0A194Q2C5   A0A212FKE2   A0A1B6IF97   A0A1B6EHK3   + More
A0A2H8TDD0   A0A1I8N9G6   X1WJ38   A0A0L0BZZ6   A0A1A9Z6H2   B4KDJ1   A0A0A9Y7R0   A0A1I8PWZ1   A0A1A9V0C2   A0A1A9WGZ1   A0A0K8UD22   Q293R6   A0A0K8UDJ1   A0A0Q9WMI2   B4PUB2   A0A0M4EMZ3   A0A2S2R9D2   A0A0R3NK77   A0A3B0KDJ2   A0A1W4VMB2   B4JV09   A0A0Q9WF28   A0A1W4VKX6   B3LWI5   B4LZV0   A0A1A9YSK4   Q9VBV6   B4IJI5   A0A146KX84   A0A088ANY8   A0A0L7QN49   K7JAD0   A0A310SCB6   A0A154PNL4   A0A026WSE2   A0A0N0BFM1   A0A336MIQ2   A0A139WIG1   E0VWN8   A0A1B0DFZ1   A0A0T6AX74   A0A1Y1LMF3   E2C1G4   A0A1W4WGP4   A0A195C5Q2   A0A195ELT0   A0A195B5T3   Q172R3   A0A1S4FG21   A0A195ESQ3   A0A0K2TUI5   E2A6H9   A0A087TEE9   A0A1J1HUC9   A0A158NIT4   A0A0P5W7S9   A0A0P5TAJ2   A0A0P4X9N0   A0A182M724   A0A0P6JRU8   A0A2A3ERY1   B0W9C8   A0A182VXH8   A0A182REU1  

PDB

5DZV     E-value=1.60552e-19,     Score=239

KEGG

101739725    no KO assigned | (RefSeq) protocadherin-16

GO

GO:0016021   GO:0005509   GO:0007156   GO:0005886   GO:0016020   GO:0007424   GO:0005887   GO:0016339   GO:0044331   GO:0006412   GO:0005200   GO:0003676   GO:0004812   GO:0006418   GO:0000049   GO:0016876  

Length:

753

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.99984

Exp number, first 60 AAs:

0.00041

Total prob of N-in:

0.00026

outside

1  -  542

TMhelix

543  -  565

inside

566  -  753

 

 

Pi

255.229704

Theta

197.530575

Tajima's D

0.943966

CLR

0.017574

CSRT

0.646117694115294

Interpretation

Possibly Positive selection