Silkworm Genome Informatics Database

Gene

KWMTBOMO09362

Pre Gene Modal

BGIBMGA002163

Annotation

hypothetical_protein_RR46_02365_[Papilio_xuthus]

Location

Bomo_Chr15(-):18116167-18122594 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.28

CDS

ATGCAATATCTAGTCCAACTCGTGGTGGCATTCCTCTTGACGACGCAGGCGAGTAGTGACAACAGCACGCTTTCAGAAGACACGTGCATCACGGAACACGGACTATGGGGCAGCCTGCTCGAAGAGTGGGCCGTCTCTGCAACTCCACAACATACAAGACAAGGCCGCATAATGGCGTTGCCCCCTGCCCACGGTTACTACGTATCTGACCGGATAGATCTCATGCCACCACCACCACCGCCTCCCCGCTTGTACCCCACTACTCAGCATCTGCCTCACCCCTCGCACTACAATGAGTGGCAGGCCAGTCCGCCACCGCCACCAGGACCTGGGAAGATTGTTAATCGACCACCAAATCCATATAAGGATAAATTTAAACCTAGTTATCCGCCTCCATCACAGAATCAGCCAATCCCAGTTCACACTCCGCAGCAGCCATACGCTCCTGGAGGATTAGTCGACCGGGTGGACGAGACCAAACCGAGCAAACCACAGAAGCAAGTTTCGGAAACCGATCTATATTTGCTAACCGCTATAGAGAAATTGGTTTATCGAGTGGACTTAATGGAGAAACGGTTGCGAAAAATGGAAGAAAACGTCCATTTCGTTTTGGCTGGAACTGATGTGAAGCCGGAGCCCTGCGCCAGTAACTTTACTCGCGTCGGAAGCGGCTGCTATTACTTCTCGACGGACGCGATCAACTGGAAGAATGCCAACTACGCGTGTCGGAAACTGAAAGGCAACTTGTTGGAGCTCGACGCGGACGACGAGAAGCGGCACTTGTTCGCCAACTTGCTCTCCGACAACAGACTGAAGGGTGCAGATTATTGGACGGGAGGTCTGAATCCAGGTCTTCTATGGATCTGGTCCCACTCCGCCAAGCCGGTGTCATCCAACAATACAAACACAAGCAGCTCGCACAGCATCGCGGGCGAGGGTCGGTGCTTGGCGCTGGTGCATGACCCGGCTCTCCACTCCTACCTGTACCGCGGACAGGACTGCGCTCTGAGACACAGATATGTTTGCGAAAAGGAAGAAGATAATGACAAGTTGGGGAATGAAATAGAAAGGGTCGCCAAGAAATTGAGAGAAGTTAAGAGGAAATCTAGAATTTTGATTAGTGGAGAAGACCCGTGA

Protein

MQYLVQLVVAFLLTTQASSDNSTLSEDTCITEHGLWGSLLEEWAVSATPQHTRQGRIMALPPAHGYYVSDRIDLMPPPPPPPRLYPTTQHLPHPSHYNEWQASPPPPPGPGKIVNRPPNPYKDKFKPSYPPPSQNQPIPVHTPQQPYAPGGLVDRVDETKPSKPQKQVSETDLYLLTAIEKLVYRVDLMEKRLRKMEENVHFVLAGTDVKPEPCASNFTRVGSGCYYFSTDAINWKNANYACRKLKGNLLELDADDEKRHLFANLLSDNRLKGADYWTGGLNPGLLWIWSHSAKPVSSNNTNTSSSHSIAGEGRCLALVHDPALHSYLYRGQDCALRHRYVCEKEEDNDKLGNEIERVAKKLREVKRKSRILISGEDP

Uniprot

H9IY30 A0A2A4JBM1 A0A2W1BNF7 A0A3S2P909 A0A212FKE4 N6U9D0 + More
A0A182GXI5 A0A1S4G7E6 A0A1J1IBY5 W8BIQ7 Q16I93 B4JGD6 B4K5U3 A0A1I8NN05 A0A1B0C7S6 A0A1A9Y2H4 A0A1I8NN10 A0A1I8NN06 A0A1I8NN04 A0A0M5J2A0 A0A182RXQ5 A0A1A9VE82 A0A182J2E4 A0A1B0A0I7 A0A182VG84 A0A182PI61

Pubmed

19121390 28756777 22118469 23537049 26483478 24495485 + More
17510324 17994087

EMBL

BABH01029837 NWSH01002071 PCG69249.1 KZ149955 PZC76488.1 RSAL01000001 + More
RVE55345.1 AGBW02008061 OWR54217.1 APGK01037191 KB740948 ENN77256.1 JXUM01095358 KQ564191 KXJ72601.1 CVRI01000047 CRK97789.1 GAMC01005375 JAC01181.1 CH478095 EAT33985.1 CH916369 EDV92605.1 CH933806 EDW15155.2 JXJN01030917 CP012526 ALC47374.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000019118 UP000069940 + More
UP000249989 UP000183832 UP000008820 UP000001070 UP000009192 UP000095300 UP000092460 UP000092443 UP000092553 UP000075900 UP000078200 UP000075880 UP000092445 UP000075903 UP000075885

PRIDE

H9IY30

Pfam

PF00059 Lectin_C + More
PF02535 Zip

Interpro

IPR016187   CTDL_fold        + More
IPR016186   C-type_lectin-like/link_sf
IPR001304   C-type_lectin-like
IPR003689   ZIP

SUPFAM

SSF56436 SSF56436

Gene 3D

3.10.100.10

ProteinModelPortal

H9IY30 A0A2A4JBM1 A0A2W1BNF7 A0A3S2P909 A0A212FKE4 N6U9D0 + More
A0A182GXI5 A0A1S4G7E6 A0A1J1IBY5 W8BIQ7 Q16I93 B4JGD6 B4K5U3 A0A1I8NN05 A0A1B0C7S6 A0A1A9Y2H4 A0A1I8NN10 A0A1I8NN06 A0A1I8NN04 A0A0M5J2A0 A0A182RXQ5 A0A1A9VE82 A0A182J2E4 A0A1B0A0I7 A0A182VG84 A0A182PI61

PDB

3J82 E-value=0.000615007, Score=102

KEGG

101737575 no KO assigned | (RefSeq) uncharacterized LOC101737575

GO

GO:0016021 GO:0046873

SignalP

Position: 1 - 19, Likelihood: 0.996472

Length:

378

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00563

Exp number, first 60 AAs:

0.00264

Total prob of N-in:

0.00635

outside

1 - 378

Pi

257.894636

Theta

157.086526

Tajima's D

-1.62926

CLR

1319.461117

CSRT

0.0451977401129944

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics