SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09330  Validated by peptides from experiments
Annotation
PREDICTED:_filaggrin-2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.014 Extracellular   Reliability : 1.309 Nuclear   Reliability : 1.255
 

Sequence

CDS
ATGGTGTTGAAAATTACTTGCCTCATACTCGCAGTGGCCGCAACTGTGCAGGGCCTTCCTCATCTCGGCTTGGGTGTTGGCGCTGGTGTTGATCTAGGCGGACATGAGCATGGGCACGGACCCGACTATGGAAACGCTGATGCCGAAGCTGGTTTGGGCGCTAATCTTGATCTTGGCGGGCATGGCTACGACAACAGCGACACTAAAGCTGATACAGTAGATGAAATCACTTGGCGTGATGGCGCTAAAGCCGGTAATGGTGTACATGAACGAGTATACACTAGAATTGGCAGGGATACACGAAACGCTGTTGATCATGATCTTGTACACGGAAAAACTAGAAGCAGTGTCGAAGCAGAAGGAACCAGTTCAGGCTTAAAAGGCTTCGGTCAAGGTGGCTTTGGAAACTATGGAGGATTTGATAGTTTTAGACACGGCGGTTCTGATTTCGATAGCTTTGCACATGGTAACTCCGGATTCAGTAGCTTTGGAAATCACAACCCCGGATTTGGTAGCTTTGGGAACTACGATTCTAGGTTCGGAAACTTTGGAAATCTTGACCCCGGATTTGGTAGCTTTGGGAATCACGATTCTGGATTCGGAAGCTTTGGAAATCGTGACCCTGGATTTGGTAGCTTTGGGAATCACGACTCTAGATTCGATAGTTTTGGGCATGACTCCATTTTCGATCACCGCGACTCTGGATTTGGTAGCTTTGGTAACTCTGGATCCAGTAGTTTTGGACATAATAGCTCTGGATCAGGTACTACCAGGAAAGACGATTCCAGTTCCACAAATCATGACAATGTCGGTTCTAGTTTACCAGATCCTGATATAGATGAAGCTAAACTTGAAGAACATGTTGAAAATATGGCTAAGGATTTGGGAAGTATCGGTGCAGCTATTGGCGAAGGCCTAGTTACCAACATTGTGGCCGGCTTCAAGAGACATTGA
Protein
MVLKITCLILAVAATVQGLPHLGLGVGAGVDLGGHEHGHGPDYGNADAEAGLGANLDLGGHGYDNSDTKADTVDEITWRDGAKAGNGVHERVYTRIGRDTRNAVDHDLVHGKTRSSVEAEGTSSGLKGFGQGGFGNYGGFDSFRHGGSDFDSFAHGNSGFSSFGNHNPGFGSFGNYDSRFGNFGNLDPGFGSFGNHDSGFGSFGNRDPGFGSFGNHDSRFDSFGHDSIFDHRDSGFGSFGNSGSSSFGHNSSGSGTTRKDDSSSTNHDNVGSSLPDPDIDEAKLEEHVENMAKDLGSIGAAIGEGLVTNIVAGFKRH

Summary

Uniprot
ProteinModelPortal

Ontologies

GO

Topology

SignalP
Position:   1 - 18,         Likelihood:  0.988824
 
 
Length:
317
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
4.0998
Exp number, first 60 AAs:
3.86718
Total prob of N-in:
0.18512
outside
1  -  317
 
 

Population Genetic Test Statistics

Pi
249.139025
Theta
169.276058
Tajima's D
1.290225
CLR
0
CSRT
0.737813109344533
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
24402669 FGNFGNIDPGFGSFGNHDSGFGSFGNR 97.50 3e-19
24402669 HGGRQEFDFIFEVFR 100.00 3e-16
24402669 FGIVYR 96.30 1e-10
24402669 DPGATTGGEIIIGGSDPAHYR 100.00 0.015
24402669 FDSDVIEIK 100.00 0.023
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