Silkworm Genome Informatics Database

Gene

KWMTBOMO09324

Pre Gene Modal

BGIBMGA003443

Annotation

PREDICTED:_DNA_topoisomerase_2-binding_protein_1_[Bombyx_mori]

Location

Bomo_Chr15(+):16028085-16050079 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.512

CDS

ATGACCGATGATATCAAAGTGACTTTTATAATACCGAAAGATTGTAAAAGCCAAGATGATTGTTCAGAAGATATGCAACTCGCATTTGTTGCTTGCGAACAACACAGTGGGGGTGGTCTGCACGGCCAGTGGGTGCATGAGACAAATTGGAATCGATTTGATGGTCTCACGAAGAGGGATGTCTTTGTCATAGCGCAGTTTGAAGGTGAATTATTCAAGAAGTTGAGGGCGACTAAGTGCTTGCTAGTAGGCCCCCGATGTCTATCCTGCTGTCTCACAGAAGGTATTTCTATACCCACTGGTCCTGAACCGGTGTATACAATTGCTATGAGAGGCTTAGTCATAACTGCTAGTGGATTAAGCAAGGATAAAAAGGAGAACATAAAGAAGAAAGTACATTGGATGGGTGGCATTTATAATAGTGTTTTAACAGATGATTCTACACACTTAGTGTCTGACACTGTATTATCTGATAAATATATTAAATCAGTAGAAAAAGGTATACCCGTCATGTCAGAGACTTGGATTGAGGCAGTTTGGGAAGCATCCCAGCGAATGAACATCAGTGGATCATCAGGAGAGTTTGACATTCACAGGTTGCCAGCATTTGCAAACCTCCAAGTCACAACATCAGGTATCTCTAAACGAGATAAACAAATGATAATGAAACTGGTCAATGAGAATGGAGGAATGTTCTCGGGTGTCTTCCAGAGTGAGACCACTGATGTGGTTGTATTGATGAAAGACGGCGCGGGCAGTGAAAAGTATAAAGCGGCCCTAGAATATGGCAAAGCTTGTGTCCTTCCATCGTGGGTGAAGGAATCTGCAGCACGGGGTGTTGCCCTTCCCGTACTCAAGTACAAGATCACTGCGGCTTCCACGTCGTCTCCACTGGCCGAACACCGACTGCCTGACATGAGTTTGAATTTCTCAAGGATAACAAACGTAAGACCGCCGAGTAATTTCGTTGACGAAACTAGATCGGTGGACGTATCAACTGTATCGGCCAAAATGAAACTATCCCAAGATGCAATATCGTCTGACACGTCCATAGATAAGGAGCTACAAGCGGAATTTGACAATTTGGACATGAGTACCATAAAGAAGGCGGGATCTATCTTCGATGGTTTTTGTATCTGGCTGGTGGGGCTGGAGGGGCGCACCCGCGAGCGCGCGGCGGCGTGCGTGTCGCGGTGCGGCGGCGTGCGCTACGAGGCGGCGCACGGGCGCGTGACGCACGCGGTGTGCGGCGCGCGCGGCCCGGCGGCGGCGGCGGCGCGCGCGCTGCCCGGCGTGCCCGTGCTGTCGGCGCGCTGGCTGCTGCACAGCGTCGCGCAGGGTCGAGCGCTCGACGAGGCGCAGTACCTAATGGACCCGAATCCTAAGACCCCAGCAAAAAGTACCAAGAAACAGAAACTGGAGGTGTCCTCGCCCATGAGCATCCGCAACCTCCAGCTGCTGCGGCGGCCGCTAGACCTTCCGCCTCCAGAACCCGTCCTGCAAGTCGAAGAACATCAAGATGAACTCGTCAATCAATATTTGAGCCAAGCAGATATCGCCCCGGACCTTTCGAAAGAGAAGACTTCAGAAACGGACCGGCCGAACTCCACGCACCAGCAGCAACCGGACGTCACTGAGGACTTTGGAGACGAACCGACGGAGGAAGTAGAACAGATATTCGCGGGTCTGCGGCTGGAGGTGCAGGCGCTGAACGAGGAGGCGGTGTGCGAGCTGGCGGCGGAGCTGGGCGCGGCGGGGGGCGCGCTGTGCGCGGGGGGCGCGGGGGGCTCGCACGTGCTGCTGCCGCTCGAGTTTGACCCCGCCGAGCGCCTCTCCGCCGCCGCCGAGCCTGTCACCGCCTTCTGGATCAAAGACTGTCTATCACAACAAGAGTTGGTTCCCCTGCAATACTACCACCGGCCCGTGCGCGTCAAGCCGAGCCCGGAGCCTCCCCTGAAGGGAGTGGTCGCCAGCCTCAGTACGTACAGCGGCGTCGAAAGGGCGTTCTTGGACGAGCTGGCCAAATTATTGGGAGCCACAACTCAACTACGTTTCTGTCGACGGAACACCGCCAACGCCCTGGCCTCGACGCATCTCATATGCCCCTCGCCCTCGGGGGACAAGTATGCCGGGGCCCTTAAATGGGGTCTGCCGGCTGTGAAGGCTTCTTGGCTGCTGACCTGCGCGGCCGAGGGACGCCGGGTCAGCGAGACGGGACACCTCGTCGGCGAGACTCAGGCTCCCTCAACGCCGGAACGTATTCAGGAGGAAAAAGAAAATAAAGAAGATACGACTGTGATGGAGAAGGAGAACGCCATGCTCCCTCCCCGCACTCCCGCCGCGCCCACCCCCGCCCCCGCCCCCGCCCCCGCCGCCAGTGCAGAGCAGACCCCGGCTAAACAAGACAACGTGGATGCGATGTCCCCGGCGAGCCGCTACATAGCGATGGCGCGGCAGGGACTCCTGGGGGGAGACTCGCAGGACACCCCCAAACAACAACCATCCGACGCCGCTGGGGACGAGGAGTGCCGCAGCCCGGCGTCGACAGGGGGGCGGAGTCGCCTGCGAGAGCTGCGCCGCGGGGAGGCGGCCGCGGACCCGCTGCGGACACCCATCGACCCCTTCGAGAGGAACACGTCGACCCCGGACAGCGCGTTCGGCGCGGCGCTGCGGCCCGGCTCCGGCCGTCTGTCCCCGGACGCCCGGAAGCGCCTCTGGAGGGTCGTCAACGAGCTGCCCTCCAGGCAACCAGAGCCGCCCCGGGACAAGACCACCCCGCTGTCGGAGATTCGCAACCGTTTCTTGTCCCGGTACCAGGAGGGCGTCGCCACGCCGCCCGTCGCCACGCCCCCCGCTACGGCTCCCAGGAAACTGCAACTGGATGAAGCCGACACGCCGCCAGCTAAGATGATGAAGTTGTCACAGGAATGTAACGCAGAAACGAATTCTCGAGCAGCAGAAGACGCCCAGCGTCCAGGGTCGCTGGTGGAGGAGCAGCTGCAGCGGCTGCAGGCGGCGCTCTCCGAGAGGCTGAGCACGCAGCGAGCGCGCCGCATGACCAGGGACCCCTCCCCGGCTCATCCCCCGCCGCCCGACACGGAGCCGGGGCCCGACTCGCAGCCCAGCACCGTGGGGAAGTTCATGCTGTCCTCCAACGTCGATAATCGTGAGGAGATAATGTCGATGATCGAGCAGCTGGGCGGCGAGGTCTGTGACGGGGCGGAGCCGGCGCCGGACGCGACGCACCTGCTGTGCGCGGCGCCCGGCCGCAGCGAGAAGATGCTGGGCTCCATCGCCGCCGGCCGCTGGGTGCTGCACCCGCGCTACGTGCCCTGCAGCCGCGACGCCGGCGCCTTCCTGCCGGAGGAGGAGTTCGAGTGGGGCAACCCGCTGGCGTCGCGGCTGGCGGGCGCGGGCGGCGGCGAGCGCGTGCTGTCCCGCGCGGCGCACCGCTGGCGGCGGGCGCGTGCGTGCGGCGCGGCGGGTGCGTTCGCGGGGCTGCGGGCGCTGCTGCACGTGCCGCCCGCGCGCCGCCGCCTGCTGGCCAGGCTCGTCACCGCCGGCGACGGACACGCGCCCGACCTCGAGTGA

Protein

MTDDIKVTFIIPKDCKSQDDCSEDMQLAFVACEQHSGGGLHGQWVHETNWNRFDGLTKRDVFVIAQFEGELFKKLRATKCLLVGPRCLSCCLTEGISIPTGPEPVYTIAMRGLVITASGLSKDKKENIKKKVHWMGGIYNSVLTDDSTHLVSDTVLSDKYIKSVEKGIPVMSETWIEAVWEASQRMNISGSSGEFDIHRLPAFANLQVTTSGISKRDKQMIMKLVNENGGMFSGVFQSETTDVVVLMKDGAGSEKYKAALEYGKACVLPSWVKESAARGVALPVLKYKITAASTSSPLAEHRLPDMSLNFSRITNVRPPSNFVDETRSVDVSTVSAKMKLSQDAISSDTSIDKELQAEFDNLDMSTIKKAGSIFDGFCIWLVGLEGRTRERAAACVSRCGGVRYEAAHGRVTHAVCGARGPAAAAARALPGVPVLSARWLLHSVAQGRALDEAQYLMDPNPKTPAKSTKKQKLEVSSPMSIRNLQLLRRPLDLPPPEPVLQVEEHQDELVNQYLSQADIAPDLSKEKTSETDRPNSTHQQQPDVTEDFGDEPTEEVEQIFAGLRLEVQALNEEAVCELAAELGAAGGALCAGGAGGSHVLLPLEFDPAERLSAAAEPVTAFWIKDCLSQQELVPLQYYHRPVRVKPSPEPPLKGVVASLSTYSGVERAFLDELAKLLGATTQLRFCRRNTANALASTHLICPSPSGDKYAGALKWGLPAVKASWLLTCAAEGRRVSETGHLVGETQAPSTPERIQEEKENKEDTTVMEKENAMLPPRTPAAPTPAPAPAPAASAEQTPAKQDNVDAMSPASRYIAMARQGLLGGDSQDTPKQQPSDAAGDEECRSPASTGGRSRLRELRRGEAAADPLRTPIDPFERNTSTPDSAFGAALRPGSGRLSPDARKRLWRVVNELPSRQPEPPRDKTTPLSEIRNRFLSRYQEGVATPPVATPPATAPRKLQLDEADTPPAKMMKLSQECNAETNSRAAEDAQRPGSLVEEQLQRLQAALSERLSTQRARRMTRDPSPAHPPPPDTEPGPDSQPSTVGKFMLSSNVDNREEIMSMIEQLGGEVCDGAEPAPDATHLLCAAPGRSEKMLGSIAAGRWVLHPRYVPCSRDAGAFLPEEEFEWGNPLASRLAGAGGGERVLSRAAHRWRRARACGAAGAFAGLRALLHVPPARRRLLARLVTAGDGHAPDLE

Uniprot

H9J1Q6 A0A2H1VDF6 A0A194Q2A0 A0A2W1B6K9 E0VXH6 A0A3L8DD26 + More
J9JMP4

Pubmed

19121390 26354079 28756777 20566863 30249741

EMBL

BABH01024042 BABH01024043 BABH01024044 BABH01024045 BABH01024046 BABH01024047 + More
ODYU01001769 SOQ38432.1 KQ459581 KPI99124.1 KZ150438 PZC70871.1 DS235832 EEB18082.1 QOIP01000009 RLU18231.1 ABLF02040277 ABLF02040308 ABLF02040310

Proteomes

UP000005204 UP000053268 UP000009046 UP000279307 UP000007819

PRIDE

H9J1Q6

Pfam

PF12738   PTCB-BRCT        + More
PF00533   BRCT
PF16770   RTT107_BRCT_5

Interpro

IPR036420 BRCT_dom_sf + More
IPR001357 BRCT_dom

SUPFAM

SSF52113 SSF52113

Gene 3D

3.40.50.10190

CDD

cd00027 BRCT

ProteinModelPortal

H9J1Q6 A0A2H1VDF6 A0A194Q2A0 A0A2W1B6K9 E0VXH6 A0A3L8DD26 + More
J9JMP4

PDB

6HM5 E-value=7.57957e-26, Score=296

KEGG

101745991 K10728 topoisomerase (DNA) II binding protein 1 | (RefSeq) DNA topoisomerase 2-binding protein 1

PATHWAY

03440 Homologous recombination - Bombyx mori (domestic silkworm)

GO

GO:0016853

Length:

1196

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04265

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00059

outside

1 - 1196

Pi

304.553588

Theta

181.572029

Tajima's D

2.267289

CLR

0.107525

CSRT

0.917154142292885

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics