Gene

KWMTBOMO09314

Pre Gene Modal

BGIBMGA003440

Annotation

PREDICTED:_probable_glutamate--tRNA_ligase?_mitochondrial_[Papilio_machaon]

Location

Bomo_Chr15(+):15762005-15765719      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.977

CDS

ATGATAATAAACCGTTCATTTAGATTAACTCTTTTCAGTCTATTTAAAATCAATCAGCTTCGTAAAACACATACTTTTGAAACAGTCAGAGTACGATTTGCTCCCAGTCCAACAGGCTATTTACATTTAGGAGGCCTTAGAACGGCTTTATATAATTATTTATTCGCAAAATCTCATAATGGCGCGTTCATACTTAGAATTGAAGATACGGATCAAACGCGGAAAGTTGAAGGAGCTCTAGAGGCCCTTGTGAGCGATCTGGAATGGGCCGGAATCGTGTACAATGAAGGCCCGGGTACTGGTACCTACGGTCCGTACGTACAGAGTGAGAGATTAAATATTTACCAAGAACACATAAAATTACTTTTAGAAAATGGTTCAGCTTACAAATGTTTTTGTACTGAGAGAAGATTGAATATACTACGCAGAGATGCTATCAGATCACAACGGATACCAAAATATGATAATAGATGTAGAAATCTGTCACATACAGAGATTTCGGAAAAAATGAAAGCCGGGACTCCCTATTGTATCAGGTTTAAATTAACATCAGACTGTCAATCTTTTGAAGATTTAATCTATGGAGGAATAGCTTACGATGTTTCCCTAAATGAAGGAGATCCGGTGCTTATGAAGAGTGATGGCTTTCCTACGTATCATTTTGCAAATGTAGTTGATGACCACATGATGAAGATAACACATGTTCTGAGGGGTGTTGAGTGGCAAATATCTACTACCAAACATTTGTTGATTTACAGAGGCTTCGGCTGGACTCCGCCATTGTTTGGTCACTTACCGTTGATAGTCAACTCGGACGGCACGAAGTTAAGTAAACGACAGAGCGACGTCAAAGTTGAGGATTATAGGAATAAAGGTATATTGCCATTGGCGTTGGTGAATTACATAACCCTGTCAGGTGGTGGTTTTGATCACGTGTCAGGCGCTGGAATTCGTTTGAGGACAATGGATGAACTGACCCAAGAGTTTAAAATTGACAAGATTTCTTCACACCCGAGTCGTCTAAACCCTGATCTTTTAGAAGAATGTAACAGATTAGATATGAAACGTTATTTAAAACAGCCGAAATTGTCAGGACAATTAGTAGAAAAACTAAAACAATTGGTAAAGAAGACCTACCCTGATCATCAAACGGATTTGTCTGAGGAGAACATCGCGAGCGTCCTAACCTGGGCCACTTCGAGAGTGACAAGGATAGAAGATTTATTGACACCGAAGTACGGCTTCCTATGGATTCTACCGTCGAGTAGTGTAGACATGGATGAAGCTTTGCTTCGGAAGTTGGTTGATCAATTAGTAAAAATAAGGTCCTTCGATGAGGATTCTTTGAAGGGGTTTTTGAAGGCATTCGCCGAGGACAACGGTGTTAAATTTCCATTATTAATGAAGAGTCTTAGAGCAGTGTTGAGTGGCCTCAAAGAGGGACCCGGCGTAGCAGAAATGATGGAATTATTAGGAAAGGATCGGTCTTTAGAAAGAATTAAAGCAGTTTTGAGATAG

Protein

MIINRSFRLTLFSLFKINQLRKTHTFETVRVRFAPSPTGYLHLGGLRTALYNYLFAKSHNGAFILRIEDTDQTRKVEGALEALVSDLEWAGIVYNEGPGTGTYGPYVQSERLNIYQEHIKLLLENGSAYKCFCTERRLNILRRDAIRSQRIPKYDNRCRNLSHTEISEKMKAGTPYCIRFKLTSDCQSFEDLIYGGIAYDVSLNEGDPVLMKSDGFPTYHFANVVDDHMMKITHVLRGVEWQISTTKHLLIYRGFGWTPPLFGHLPLIVNSDGTKLSKRQSDVKVEDYRNKGILPLALVNYITLSGGGFDHVSGAGIRLRTMDELTQEFKIDKISSHPSRLNPDLLEECNRLDMKRYLKQPKLSGQLVEKLKQLVKKTYPDHQTDLSEENIASVLTWATSRVTRIEDLLTPKYGFLWILPSSSVDMDEALLRKLVDQLVKIRSFDEDSLKGFLKAFAEDNGVKFPLLMKSLRAVLSGLKEGPGVAEMMELLGKDRSLERIKAVLR

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

H9J1Q3   A0A2W1BRL5   A0A2A4JKT3   A0A2H1VEK8   A0A194RP91   A0A437BNW5   + More
A0A194Q0N5   A0A1I8MN60   Q8MZ14   Q9VV59   B5RJ44   W8BW97   A0A0L0C0W7   Q29EI4   B4H224   A0A1B0CM62   B4QMT5   A0A1I8Q9M3   A0A0A1X793   A0A1W4UU33   B4L9J7   K7J5T9   A0A232EVQ0   A0A0K8VEY4   B3M6Y1   A0A1A9UIE8   A0A139WI37   A0A1A9W3A8   A0A1B0B6M2   A0A1B0A704   A0A1B0FJP1   D3TL48   B4ITA4   A0A1A9YSR5   B3NDT8   B4PHH5   B4J0V6   A0A3B0JYG7   B4MMI0   B4LI46   A0A0M4EBJ1   B4HJN2   A0A0M3QWE0   N6THR9   Q178Z5   A0A1Y1KQD4   A0A151IJY4   A0A2A3E8P3   A0A182GUE7   D6WN97   A0A182HF33   A0A2J7R115   A0A067R6M3   E9IX00   A0A1Q3FWX7   A0A336L7K5   A0A0C9QXF8   A0A151J273   A0A151WT67   F4WW98   A0A1B6EL26   A0A195FC32   A0A195B0X1   A0A158NKH4   A0A1Y1KQ26   A0A1S3D893   A0A0J7KQK9   E1ZZZ8   A0A0N0BBU7   A0A1B6KEA1   A0A182QHL2   A0A182NRK5   A0A182P070   E2B309   A0A026WIL0   A0A084WRJ5   Q7QCD2   A0A2M4BLF4   W5J5U2   A0A182LEQ4   A0A182HSN8   A0A182XAU1   A0A182VWX9   A0A182Y6F7   A0A182URW2   A0A182IK35   A0A182FNV9   A0A182K668   A0A182TK14   A0A182MW94   A0A182RS80   K1RFG9   A0A1B6E9L0   J9K531   A0A1I8Q9H5   A0A0L7QZ91   A0A146M5B8   A0A0N7ZAC1   A0A0L8GU32  

Pubmed

19121390    28756777    26354079    25315136    10731132    12537568    + More
12537572    12537573    12537574    16110336    17569856    17569867    24495485    26108605    15632085    17994087    22936249    25830018    20075255    28648823    18362917    19820115    20353571    17550304    23537049    17510324    28004739    26483478    24845553    21282665    21719571    21347285    20798317    24508170    30249741    24438588    12364791    14747013    17210077    20920257    23761445    20966253    25244985    22992520    26823975   

EMBL

BABH01024010    KZ149923    PZC77678.1    NWSH01001155    PCG72328.1    ODYU01002150    + More
SOQ39278.1    KQ460106    KPJ17841.1    RSAL01000026    RVE52083.1    KQ459581    KPI99116.1    AY113421    AAM29426.1    AE014296    AAF49463.1    BT044318    ACH92383.1    GAMC01000960    JAC05596.1    JRES01001060    KNC25940.1    CH379070    EAL30077.2    CH479203    EDW30376.1    AJWK01018257    CM000363    CM002912    EDX10727.1    KMZ00050.1    GBXI01007295    JAD06997.1    CH933816    EDW17372.1    AAZX01005829    NNAY01001968    OXU22426.1    GDHF01014927    JAI37387.1    CH902618    EDV39817.1    KQ971342    KYB27531.1    JXJN01009163    CCAG010005237    EZ422148    ADD18343.1    CH891678    EDW99617.1    CH954178    EDV52292.1    CM000159    EDW95413.1    CH916366    EDV95777.1    OUUW01000012    SPP87094.1    CH963847    EDW73325.1    CH940647    EDW68590.1    CP012525    ALC44841.1    CH480815    EDW41759.1    ALC43983.1    APGK01037596    APGK01037597    APGK01037598    KB740948    ENN77358.1    CH477355    EAT42824.1    GEZM01076960    GEZM01076958    JAV63514.1    KQ977294    KYN03959.1    KZ288347    PBC27559.1    JXUM01018446    KQ560513    KXJ82043.1    EFA03776.2    JXUM01133376    KQ567972    KXJ69212.1    NEVH01008214    PNF34522.1    KK852665    KDR18959.1    GL766616    EFZ14871.1    GFDL01002924    JAV32121.1    UFQS01002172    UFQT01002172    SSX13404.1    SSX32838.1    GBYB01000365    JAG70132.1    KQ980439    KYN16048.1    KQ982762    KYQ51080.1    GL888406    EGI61440.1    GECZ01031144    JAS38625.1    KQ981693    KYN37762.1    KQ976692    KYM77849.1    ADTU01018839    GEZM01076959    JAV63513.1    LBMM01004264    KMQ92647.1    GL435531    EFN73238.1    KQ435955    KOX68068.1    GEBQ01030216    JAT09761.1    AXCN02000002    GL445250    EFN89978.1    KK107183    QOIP01000011    EZA55882.1    RLU16791.1    ATLV01026105    KE525406    KFB52839.1    AAAB01008859    EAA08061.5    GGFJ01004755    MBW53896.1    ADMH02002163    ETN58149.1    APCN01000311    AXCM01003299    JH817223    EKC32886.1    GEDC01002679    JAS34619.1    ABLF02035222    KQ414681    KOC63949.1    GDHC01004000    JAQ14629.1    GDRN01101122    JAI58432.1    KQ420375    KOF80488.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000283053    UP000053268    UP000095301    + More
UP000000803    UP000037069    UP000001819    UP000008744    UP000092461    UP000000304    UP000095300    UP000192221    UP000009192    UP000002358    UP000215335    UP000007801    UP000078200    UP000007266    UP000091820    UP000092460    UP000092445    UP000092444    UP000002282    UP000092443    UP000008711    UP000001070    UP000268350    UP000007798    UP000008792    UP000092553    UP000001292    UP000019118    UP000008820    UP000078542    UP000242457    UP000069940    UP000249989    UP000235965    UP000027135    UP000078492    UP000075809    UP000007755    UP000078541    UP000078540    UP000005205    UP000079169    UP000036403    UP000000311    UP000053105    UP000075886    UP000075884    UP000075885    UP000008237    UP000053097    UP000279307    UP000030765    UP000007062    UP000000673    UP000075882    UP000075840    UP000076407    UP000075920    UP000076408    UP000075903    UP000075880    UP000069272    UP000075881    UP000075902    UP000075883    UP000075900    UP000005408    UP000007819    UP000053825    UP000053454   

PRIDE

H9J1Q3    Q8MZ14    Q9VV59    B5RJ44   

Pfam

PF00749   tRNA-synt_1c

Interpro

IPR001412   aa-tRNA-synth_I_CS        + More
IPR008925   aa-tRNA-synth_I_codon-bd       
IPR020751   aa-tRNA-synth_I_codon-bd_sub2       
IPR020058   Glu/Gln-tRNA-synth_Ib_cat-dom       
IPR033910   GluRS_core       
IPR004527   Glu-tRNA-ligase_bac/mito       
IPR014729   Rossmann-like_a/b/a_fold       
IPR000924   Glu/Gln-tRNA-synth       
IPR001313   Pumilio_RNA-bd_rpt       

SUPFAM

SSF48163   SSF48163       

Gene 3D

1.10.10.350     3.40.50.620    

CDD

cd00808  GluRS_core

ProteinModelPortal

H9J1Q3   A0A2W1BRL5   A0A2A4JKT3   A0A2H1VEK8   A0A194RP91   A0A437BNW5   + More
A0A194Q0N5   A0A1I8MN60   Q8MZ14   Q9VV59   B5RJ44   W8BW97   A0A0L0C0W7   Q29EI4   B4H224   A0A1B0CM62   B4QMT5   A0A1I8Q9M3   A0A0A1X793   A0A1W4UU33   B4L9J7   K7J5T9   A0A232EVQ0   A0A0K8VEY4   B3M6Y1   A0A1A9UIE8   A0A139WI37   A0A1A9W3A8   A0A1B0B6M2   A0A1B0A704   A0A1B0FJP1   D3TL48   B4ITA4   A0A1A9YSR5   B3NDT8   B4PHH5   B4J0V6   A0A3B0JYG7   B4MMI0   B4LI46   A0A0M4EBJ1   B4HJN2   A0A0M3QWE0   N6THR9   Q178Z5   A0A1Y1KQD4   A0A151IJY4   A0A2A3E8P3   A0A182GUE7   D6WN97   A0A182HF33   A0A2J7R115   A0A067R6M3   E9IX00   A0A1Q3FWX7   A0A336L7K5   A0A0C9QXF8   A0A151J273   A0A151WT67   F4WW98   A0A1B6EL26   A0A195FC32   A0A195B0X1   A0A158NKH4   A0A1Y1KQ26   A0A1S3D893   A0A0J7KQK9   E1ZZZ8   A0A0N0BBU7   A0A1B6KEA1   A0A182QHL2   A0A182NRK5   A0A182P070   E2B309   A0A026WIL0   A0A084WRJ5   Q7QCD2   A0A2M4BLF4   W5J5U2   A0A182LEQ4   A0A182HSN8   A0A182XAU1   A0A182VWX9   A0A182Y6F7   A0A182URW2   A0A182IK35   A0A182FNV9   A0A182K668   A0A182TK14   A0A182MW94   A0A182RS80   K1RFG9   A0A1B6E9L0   J9K531   A0A1I8Q9H5   A0A0L7QZ91   A0A146M5B8   A0A0N7ZAC1   A0A0L8GU32  

PDB

4GRI     E-value=4.56285e-84,     Score=794

KEGG

101738873    K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] | (RefSeq) probable glutamate--tRNA ligase, mitochondr

PATHWAY

00860    Porphyrin and chlorophyll metabolism - Bombyx mori (domestic silkworm)
00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)
01100    Metabolic pathways - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0008270   GO:0000049   GO:0006424   GO:0004818   GO:0016021   GO:0005739   GO:0000166   GO:0005737   GO:0004812   GO:0006418   GO:0016876   GO:0043039  

Length:

505

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.35933

Exp number, first 60 AAs:

0.11171

Total prob of N-in:

0.01445

outside

1  -  505

 

 

Pi

245.911076

Theta

229.276877

Tajima's D

0.294467

CLR

18.43457

CSRT

0.454927253637318

Interpretation

Uncertain