SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09311  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003439
Annotation
PREDICTED:_probable_pseudouridine-5'-phosphatase_[Amyelois_transitella]
Full name
Probable pseudouridine-5'-phosphatase      
Alternative Name
GS1-like protein
Pseudouridine-5'-monophosphatase
Location in the cell
Cytoplasmic   Reliability : 1.651 Mitochondrial   Reliability : 1.648
 

Sequence

CDS
ATGAGGTTTAATTTATTGAGAATAGTAAGAACGGTTCCTAAAGCTGTTGGCGCGCGATGCTACTCGACGAATAATTTTAAGACCGTCACCCACTGTATATTTGATATGGACGGTTTGTTATTAGACACCGAGCAAGTTTACAAAAAAATGATAACGCAACTTTGTGCGCAATATGGCCACACATACACCAATGAGCTCATGATGAAGATCTTGGGTGGTACAGAGCAACGACTCTCTGAAATCCTCTGTAAAGAACTGAACTTACCAGTGACTCCTACAGAATTTAGAGATCAATTACTTGTCTTAGGGGATAAGATGCTGGCTGGTACACCCTTATTAGATGGTGCAGAAAAACTAATAAGGCATTTACATAAAACAAAAGTACCGTTCGCGCTAGCCACGTCATCAAGTGAACGATCAGTGAAGACTAAAGTTGCTGCACATAAGGAGCTCTTCCAACTTTTCCACCACATGGTCATGGGAAGTTCTGATAAGGAGGTGAAATTTGGGAAACCACATCCTGATATATTCCTTGTGGCAGCCAATAGATTCCCAGACAAACCTGAACCTTCAAAGTGCCTTGTGTTTGAAGATTCCCCGCATGGCGTCACAGCAGGAATAAAAGCTGGCATGCAAGTAGTTATGGTACCCGACCCACACACAGACAAGAGACTGACTAAACACGCCACAGTAGTGTTACCAACTTTAGCAAAGTTCCAACCAGAGTGGTTTGGGTTACCAGCTTATTAA
Protein
MRFNLLRIVRTVPKAVGARCYSTNNFKTVTHCIFDMDGLLLDTEQVYKKMITQLCAQYGHTYTNELMMKILGGTEQRLSEILCKELNLPVTPTEFRDQLLVLGDKMLAGTPLLDGAEKLIRHLHKTKVPFALATSSSERSVKTKVAAHKELFQLFHHMVMGSSDKEVKFGKPHPDIFLVAANRFPDKPEPSKCLVFEDSPHGVTAGIKAGMQVVMVPDPHTDKRLTKHATVVLPTLAKFQPEWFGLPAY

Summary

Description
Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation.
Catalytic Activity
H2O + psi-UMP = phosphate + pseudouridine
Cofactor
Mg(2+)
Similarity
Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
Keywords
Complete proteome   Hydrolase   Magnesium   Metal-binding   Nucleotide metabolism   Reference proteome  
Feature
chain  Probable pseudouridine-5'-phosphatase
EC Number
3.1.3.96
EMBL
KQ459602    KPI93626.1    KQ460106    KPJ17838.1    NWSH01001155    PCG72330.1    + More
ODYU01002150    SOQ39275.1    JTDY01000685    KOB76229.1    AGBW02009685    OWR50114.1    BABH01024009    KZ149923    PZC77675.1    RSAL01000026    RVE52080.1    GFDL01003675    JAV31370.1    GGFJ01008794    MBW57935.1    APCN01002192    AAAB01008904    EGK97236.1    GGFL01004589    MBW68767.1    GGFK01008767    MBW42088.1    CH379060    EAL34041.3    KRT04422.1    GANO01001898    JAB57973.1    KK853286    KDR08959.1    GFDF01009904    JAV04180.1    GAMC01009876    JAB96679.1    OUUW01000004    SPP79871.1    CH933807    EDW12959.2    EAA44497.5    AE014134    AAN10348.2    GDHF01011619    JAI40695.1    CH940649    KRF81936.1    CM002910    KMY88081.1    CH477259    EAT45748.1    CH963852    EDW75565.2    GAKP01001998    JAC56954.1    GBYB01003997    JAG73764.1    CH964272    EDW84088.1    GDAI01001045    JAI16558.1    CM000157    EDW87643.2    CH954177    EDV57738.2    GGFJ01008792    MBW57933.1    GBXI01014603    JAC99688.1    GGFM01002768    MBW23519.1    GAMC01009877    JAB96678.1    DS235044    EEB10900.1    GGFK01008394    MBW41715.1    GEZM01012147    GEZM01012146    JAV93147.1    ADMH02001839    ETN60968.1    CP012523    ALC38555.1    GGMR01002697    MBY15316.1    KRG03519.1    AAZX01006389    SPP79872.1    EDW64906.2    KRF81935.1    CH902624    EDV33355.2    KQ971343    KYB27261.1    ATLV01026812    KE525419    KFB53369.1    JXUM01128127    JXUM01128128    KQ567279    KXJ69498.1    ADTU01019320    EU252355    ACD11926.1    KQ977115    KYN05610.1    GAKP01001996    JAC56956.1    GBYB01003996    JAG73763.1    KRT04420.1    KRT04421.1    KQ979568    KYN20771.1    GDHF01029334    JAI22980.1    GAKP01001995    JAC56957.1    PYGN01001923    PSN32125.1    AXCM01002171    KQ977858    KYM99286.1    GBXI01009668    JAD04624.1    GALX01004746    JAB63720.1    KRF98274.1    KQ982314    KYQ58023.1    ABLF02010290    AK342657    BAH72605.1    UFQT01001478    SSX30731.1    BABH01011545    GALA01001520    JAA93332.1    GFDF01010668    JAV03416.1    U66355    U66356    BT023759    KMY88082.1    KMY88083.1    GEDC01013960    JAS23338.1    GECZ01016340    GECZ01001079    JAS53429.1    JAS68690.1    KQ982625    KYQ53466.1    AXCN02000301    KK107185    QOIP01000012    EZA55810.1    RLU16311.1    KQ435726    KOX78131.1    GEZM01063155    JAV69266.1    KQ976731    KYM76233.1    ADTU01006978   
Pfam
PF13419   HAD_2
Interpro
IPR041492   HAD_2        + More
IPR023214   HAD_sf       
IPR023198   PGP-like_dom2       
IPR036412   HAD-like_sf       
IPR006439   HAD-SF_hydro_IA       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56784   SSF56784        + More
SSF57756   SSF57756       
Gene 3D
PDB
3L5K     E-value=6.76362e-52,     Score=513

Ontologies

Topology

Length:
249
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0021
Exp number, first 60 AAs:
0.00087
Total prob of N-in:
0.05442
outside
1  -  249
 
 

Population Genetic Test Statistics

Pi
201.470723
Theta
154.108922
Tajima's D
1.066766
CLR
0.012671
CSRT
0.676166191690415
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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