Pre Gene Modal
BGIBMGA003304
Annotation
PREDICTED:_glypican-4_[Bombyx_mori]
Location in the cell
Cytoplasmic Reliability : 1.77 Nuclear Reliability : 2.142
Sequence
CDS
ATGTGGTACGATGCAGATCAGCTCTGCTTGAACCATGGCTGTTGCGGGCCTAATTCAAGGCAGAGGCTAACGCAACAGGCCCGGTCGCAGCTTGAGGCGGCGCTGCGCAGTGAACTCAGCAAGCTGTCTGACATGCTGTTGAACAGAGCCAACAAGTTCGATGAATTCTTCAGGAAGCTGCTCAAGCTGTCGCGAGAAGAGTTCCACGCGATGTTCAAGAGAACCTACGGAATGATTTACGAACAGCATTCCTACGTCTTTGAACAGTTATTCGAACAACTCGAAAGGTACTACAGCCGAGGCGACACAAACTTTGACGCAATGATGGATAGCTTCTTCGGAATTCTGTACAAGAAGATGTTCACGGTACTTAATTCGCAGTACACGTTCGATGAAAAATACCTAAAATGCGTGAACGAACATATGCGTGAGATCCAGCCCTTCGAGGATGTTCCCAAGAAGCTATCAGTTCAACTCCGAAGGGCGGTGGTCGCCACCCGCACCTTCCACAAAGCGCTCCGAGCCGGCGCTGATGTAGTACGCGACATGACTCAGGCCGGTTTGACCCCGGAATGCGCAACAGCTTGGACTAGGCTGAGGTACTGCGGTGCGTGCGGCGGACTCCAGGTCCCAGCCTGCTCCCGGTACTGTCATAACGTCATCCGTGGATGTCTGCCAGCTCACGCTGATCTGGGCGAACAATGGGATGCATATGTCGACGCCGTAGACAAAGTAGCCGACCGACTTCTCGGCCCGTTCAACATAGCTATGGTGGTCGAACCGATCGACATCAAGATATCCGAAGCCATCATGAGTTTCCAAGAGCACAATCGCGAAATATCACAGCGGATATTCACCGGTTGCGGAAAACCTGTCCTGGGAGGCGGAGGTGGCGCCGGACCGTTCTTCGCTTCTGATCGAACGAGGAGGTCACCTCGGGCGATACCAGACTTTGACTGGAACCAGAAAGCGAACGACGTTGATGACTTCGAGGTGGAAACTACCTTTGAAAGCTTGATCAACGATGATCCACAGTTAGTTGGACTCAGGACTCCCGAGGGAATCAAGAAGGCCACAGCGGAAATGGCAGAACAGGCCAAACTTCGGGATAGGTTCCTGCAGTACATGAGAGGGAATATCGGTCTCGAAGAGTATGAAGAGCACGAGAGGAAGAAACGTGACGCCGACCCCGACCCGGCGCCCGCGGGCGGTCTGGACATTGATTTCAGAAATTACGATTTCGATAAGAAATCGAAAAAGAAGAAACCTGCCGCCAAATCCGAAGACAGTCACGGGTCAGACTGGGGCGGCCCGGCCCTAGAGCGGCTGGTCCGGGAGACGCGCACGCGAGTCCGCAACACGCGCCGCTACTGGCACCACCTGCCCGCGCTCATGTGCTCCTCCACCAGCACGCCCAGCGCGCCCTGCTTCAACGGCTCCGCGGTCGCCAGTTACACCCTCATCGCCGCCGGAGACGGCACTATCGGCCTCGCTTCTAACCCTGAAGTCAAGGGCAAGGTCAGTCCCACCGCCGAGACGGTCGTGGCCGCAGAGATCGAGACCTTGAAGACCCTGACGGCGAGACTCAAGGATGCCTTCAACGGCGTCGAAGTTCAGTGGACCGATGCTGAGGATAGAGAAATGCAACCGGCCAGTTCATCAGCGCAGGAGTACATCGACGGCGCGGAGTCGGGTTCCGGGTCGGGCGACTTCGGCAATGACGACGACCTGACCGACGACGATGATGAAGGCGAAGATGATTACGAGAGAGGTTCCGGCGATTCAGCTGAAGAGGAAACGGTTGAGCCACCCACGGACGTGGAGCCGCCCATGAATCCGCCGCCGCCGCCGCCGCCGTCCACCACCACCACCATCGAGCCGTACATACCCGTCATTGTAGACTCGCCTGCCACCAACAACGTGTTCGTCAGGCCCCGTCTCGACGACACACCAAGAGCCAGCGACATAGACATCCCGCCCGATACGAGCAGCGACAGAACCGAGGTTCAAGACACGTCGGCCAGGGAGCAGCCGATCACCGACGCGGCCGACCGACCGTCGCTACAGAAAGCCCTCTTCACTTACGCTCTGCCCGTAGTGTGCGCGTGGTTCGGTACAATAATAACCGATTTGTTCTAG
Protein
MWYDADQLCLNHGCCGPNSRQRLTQQARSQLEAALRSELSKLSDMLLNRANKFDEFFRKLLKLSREEFHAMFKRTYGMIYEQHSYVFEQLFEQLERYYSRGDTNFDAMMDSFFGILYKKMFTVLNSQYTFDEKYLKCVNEHMREIQPFEDVPKKLSVQLRRAVVATRTFHKALRAGADVVRDMTQAGLTPECATAWTRLRYCGACGGLQVPACSRYCHNVIRGCLPAHADLGEQWDAYVDAVDKVADRLLGPFNIAMVVEPIDIKISEAIMSFQEHNREISQRIFTGCGKPVLGGGGGAGPFFASDRTRRSPRAIPDFDWNQKANDVDDFEVETTFESLINDDPQLVGLRTPEGIKKATAEMAEQAKLRDRFLQYMRGNIGLEEYEEHERKKRDADPDPAPAGGLDIDFRNYDFDKKSKKKKPAAKSEDSHGSDWGGPALERLVRETRTRVRNTRRYWHHLPALMCSSTSTPSAPCFNGSAVASYTLIAAGDGTIGLASNPEVKGKVSPTAETVVAAEIETLKTLTARLKDAFNGVEVQWTDAEDREMQPASSSAQEYIDGAESGSGSGDFGNDDDLTDDDDEGEDDYERGSGDSAEEETVEPPTDVEPPMNPPPPPPPSTTTTIEPYIPVIVDSPATNNVFVRPRLDDTPRASDIDIPPDTSSDRTEVQDTSAREQPITDAADRPSLQKALFTYALPVVCAWFGTIITDLF
Summary
Description
Cell surface proteoglycan that bears heparan sulfate.
Similarity
Belongs to the glypican family.
Uniprot
EMBL
Proteomes
PRIDE
Pfam
PF01153 Glypican
Interpro
IPR001863
Glypican
ProteinModelPortal
PDB
3ODN
E-value=1.68928e-77,
Score=739
Ontologies
GO
PANTHER
Topology
Subcellular location
Cell membrane
Length:
712
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
2.07739
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00246
outside
1 - 712
Population Genetic Test Statistics
Pi
211.080296
Theta
162.397875
Tajima's D
1.174016
CLR
0.319967
CSRT
0.707564621768912
Interpretation
Uncertain
