SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09307  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003305
Annotation
PREDICTED:_general_transcription_factor_IIF_subunit_1_isoform_X1_[Bombyx_mori]
Full name
General transcription factor IIF subunit 1      
Alternative Name
Transcription factor 5 large chain
Transcription initiation factor IIF subunit alpha
Location in the cell
Nuclear   Reliability : 4.632
 

Sequence

CDS
ATGTCTACACCTGGAAGTAGTACGACACCGGCCGCCACAGTACAGGAGTATAAAATAAGAGTGCCAAAGAATGTAAAGAAGAAGTATCATGTTATGAGGTTCAATGCCACATTGAATGTAGATTTTGCAAAATGGACTCATGTCAAGATGGAGCGAGAGAACAACAGCAAAGAATTCAAAGGAGCTGAAGAGGAAATGCCCAAATTTGGTGCAGGCTCGGAATACGGACGGGACATGCGTGAGGAAGCACGTCGCAAGAAATTCGGTATAATATCAAGAAAGTACAAACCGGAAGACCAGCCGTGGATCCTGAAAGTCGGTGGAAAGACCGGCAAGAAATTCAAAGGTATTCGTGAAGGTGGAGTATCAGAGAATGCTGCATATTATGTGTTCACTCACGCAGCGGATGGCGCAATAGACGCCTATCCACTCCAGGAATGGTACAATTTCCAACCGATTCAGAGATACAAAGCGCTGTCAGCTGAAGAAGCCGAACAGGAATTTGGCAGGCGTAACAAGGTTATGAATTTCTTCTCGTTGATGTTACGGAAACGGCTCCGCGGAGTCGACGATGCAGACGAAGAGGACCCAGACGAAAAGAAAGCTAAAGGGAAAGCTAAAAAAGACCTCAAGATATCCGAGATGGACGAATGGATAGACTCCGACGACGCTTCCTCGGACTCCGGTGCTGGTGAAAAAGAAAAGGAAGAGGACAGTGACTCCGGGGCCAAAAAGAAGAAAAAGGGTAAAGGTCCGCCCCCCAAGAAGAAGCGAAAAGTAAATGACGAAGCGTTCGAAGAGAGCGACGACGGGGACGAGGAGGGTCGGGAGAAGGACTACGTGTCCGACTCCTCGGAGAGTGAATCGGATCACGAAACTAAAACTAATAAGGAACTCAAAGGAGTGGCAGAAGAAGACGCGCTCAGGAAACTGCTGACTTCCGACGAAGACTCCGAAGAGGAGCAGGAGCAGAAACAGGAGTCGGAACACGAGGACGAGCCCACGAAGGAAGGCGAAGAGAGAGCCAGCAAGCTCACCAAGAAAAAGAAGAAAACTGACGAAACTAAAAAAGATTCGAGCAGCGACTTCAGTTCGGACTCTGACACGGAGCCCGAGGCTGGCAACACAAAGAAGCCGAAGAAGAGTAAGAACGCCGACAAGAACGCGGGCGCCGGTGCCTCGGGAGCAGGTCGCGCTCATGTTACTATCTACCAGTAG
Protein
MSTPGSSTTPAATVQEYKIRVPKNVKKKYHVMRFNATLNVDFAKWTHVKMERENNSKEFKGAEEEMPKFGAGSEYGRDMREEARRKKFGIISRKYKPEDQPWILKVGGKTGKKFKGIREGGVSENAAYYVFTHAADGAIDAYPLQEWYNFQPIQRYKALSAEEAEQEFGRRNKVMNFFSLMLRKRLRGVDDADEEDPDEKKAKGKAKKDLKISEMDEWIDSDDASSDSGAGEKEKEEDSDSGAKKKKKGKGPPPKKKRKVNDEAFEESDDGDEEGREKDYVSDSSESESDHETKTNKELKGVAEEDALRKLLTSDEDSEEEQEQKQESEHEDEPTKEGEERASKLTKKKKKTDETKKDSSSDFSSDSDTEPEAGNTKKPKKSKNADKNAGAGASGAGRAHVTIYQ

Summary

Description
TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation.
Subunit
Heterodimer of an alpha and a beta subunit.
Similarity
Belongs to the TFIIF alpha subunit family.
Keywords
Complete proteome   DNA-binding   Nucleus   Phosphoprotein   Reference proteome   Transcription   Transcription regulation   Transferase  
Feature
chain  General transcription factor IIF subunit 1
Pfam
PF05793   TFIIF_alpha
Interpro
IPR036390   WH_DNA-bd_sf        + More
IPR036388   WH-like_DNA-bd_sf       
IPR008851   TFIIF-alpha       
IPR011039   TFIIF_interaction       
SUPFAM
SSF50916   SSF50916        + More
SSF46785   SSF46785       
Gene 3D
PDB
6O9L     E-value=3.45603e-42,     Score=432

Ontologies

Topology

Subcellular location
Nucleus  
Length:
405
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00113
Exp number, first 60 AAs:
0.00056
Total prob of N-in:
0.00443
outside
1  -  405
 
 

Population Genetic Test Statistics

Pi
201.683824
Theta
182.640484
Tajima's D
0.613023
CLR
0.628726
CSRT
0.545822708864557
Interpretation
Uncertain
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