Gene

KWMTBOMO09304

Pre Gene Modal

BGIBMGA003307

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_RNF13_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(-):15488860-15524360      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.285

CDS

ATGGAGGAATTCCGCGACATCCCGGCTAGTTTCGGCGAGGAACTGCCGCCGGAGGGTCTGCGCGGACTCCTGGTCGAGGGCGTCCCGGCTGACGGATGCACGGCCCTGGATAAACCGCCCGTTGTCGACAGCTTTACCGGGAAATGGATCGTACTCGTAGCCAGATACAACTGCAGCTTCGAAGTGAAGATACGCAACGCGCAGGCGGCCGGCTTCGATTGCGCGATCGTGCACAACGTGAACTCGAGCGATTTGGAGAAAATGTCGGCTAAGAATCCGGAGGGCATCGTGATACCTTCAGTGTTCGTCAGTGACGTGGCCGGCGACATACTGGCAGCGGAATACCAATATAATGCCGGTTTCTTTATAATGGTGAACGGCGACCTACCGTTCAACATCAACACGCACCTGCTGTTGCCCTTCGCAATAGTGGTCGTGCTCTGTCTACTCGTCATATTTATATTTATGATAGTGAAATGTATAAAAGACAGACGCAGAGCCAGAAGGCACCGCTTACCGCATCGTGCGCTTTCGAAGATACCGACGTGCAAGTTCAGCAAGGGCGACCCGTACGACACGTGCGCCATCTGCCTTGACGACTACCAGGAGGGGGACCGCCTGCGCGTGCTGCCCTGCGCCCACGCTTACCACAGCGCGTGCATCGACCCGTGGCTGACGCAGAACAAGCGCGTGTGTCCGGTGTGCAAGCGCCGCGTGGTGTCCGCCGGCGAGCCCCGCCCCCGCCGCTCCTCCTCCTCCTCCGACTCCGACACCGAGCCGCTCCTGCCGCAGCCGCGGGACCAGGGAGGAGGAACATTTGAAGAGCAACGCGAGAATCCTTTCGTGCGAGCGGCGAGATTCATGTCGAGGTTGCGGGCTCGAAATAACCAGAATAGTGCTGATGCAGAGGTCCCTCCTGAACTAGAAGATAGTCAAGAAACGTCTGATCAGGACGAATTGAACGGCAGTACCGAGGCGCAGCCCCTGCTGGAGGAGCGCGCCCCCCACTCCATCAACGGCTCCTCGCGCGGGGAGATCGGGGTGGCGGCGCTGCCGGCTCCCGCCTACCACTCGCTGCCGCGGTACATCGACTTATGA

Protein

MEEFRDIPASFGEELPPEGLRGLLVEGVPADGCTALDKPPVVDSFTGKWIVLVARYNCSFEVKIRNAQAAGFDCAIVHNVNSSDLEKMSAKNPEGIVIPSVFVSDVAGDILAAEYQYNAGFFIMVNGDLPFNINTHLLLPFAIVVVLCLLVIFIFMIVKCIKDRRRARRHRLPHRALSKIPTCKFSKGDPYDTCAICLDDYQEGDRLRVLPCAHAYHSACIDPWLTQNKRVCPVCKRRVVSAGEPRPRRSSSSSDSDTEPLLPQPRDQGGGTFEEQRENPFVRAARFMSRLRARNNQNSADAEVPPELEDSQETSDQDELNGSTEAQPLLEERAPHSINGSSRGEIGVAALPAPAYHSLPRYIDL

Uniprot

A0A1E1WVK6   A0A3S2NIR9   A0A1E1WQF6   A0A194RKH0   A0A2A4JQ86   A0A2W1BWU1   + More
A0A0C9QY57   A0A0J7NEF8   A0A026WDU9   E1ZWF2   A0A2A3EAX2   A0A1W4WUL7   V9IIJ1   A0A195EW65   F4WV10   A0A151J1N6   E9J9L8   A0A088AHH3   A0A1W4WUB3   A0A151WT35   A0A195BS18   A0A158NNT3   A0A2J7PE15   A0A2J7PE22   A0A151I7N6   A0A310S6D2   A0A0M8ZR78   A0A154NZR8   D7EL38   A0A232FEL3   A0A1B6M4I7   A0A1Y1LIE5   A0A212FEQ1   A0A224XNQ8   A0A0V0GAY0   T1HBC2   N6UAC4   E9GUD5   A0A0N8AZC6   A0A0P5VCK9   A0A0P5MYQ8   A0A0P5IU71   A0A0P5TJ08   A0A0P5RE42   A0A0N8EP78   A0A0P5EC08   A0A0P5FIL4  

Pubmed

26354079    28756777    24508170    30249741    20798317    21719571    + More
21282665    21347285    18362917    19820115    28648823    28004739    22118469    23537049    21292972   

EMBL

GDQN01006708    GDQN01004963    GDQN01000040    JAT84346.1    JAT86091.1    JAT91014.1    + More
RSAL01000026    RVE52074.1    GDQN01001907    JAT89147.1    KQ460106    KPJ17830.1    NWSH01000846    PCG73868.1    KZ149923    PZC77667.1    GBYB01001634    GBYB01005617    GBYB01005618    GBYB01005619    JAG71401.1    JAG75384.1    JAG75385.1    JAG75386.1    LBMM01006115    KMQ90915.1    KK107256    QOIP01000006    EZA54275.1    RLU22165.1    GL434819    EFN74498.1    KZ288310    PBC28624.1    JR046038    AEY60119.1    KQ981953    KYN32478.1    GL888384    EGI61898.1    KQ980503    KYN15789.1    GL769399    EFZ10438.1    KQ982766    KYQ50993.1    KQ976417    KYM89810.1    ADTU01021753    ADTU01021754    NEVH01026112    PNF14580.1    PNF14577.1    KQ978438    KYM93977.1    KQ794714    OAD47015.1    KQ435969    KOX67879.1    KQ434786    KZC05093.1    DS497802    EFA11839.1    NNAY01000354    OXU28960.1    GEBQ01009159    JAT30818.1    GEZM01060990    GEZM01060989    JAV70797.1    AGBW02008909    OWR52221.1    GFTR01006356    JAW10070.1    GECL01000897    JAP05227.1    ACPB03005610    APGK01032712    KB740848    KB632411    ENN78680.1    ERL95235.1    GL732566    EFX76866.1    GDIQ01228051    JAK23674.1    GDIP01117037    JAL86677.1    GDIQ01149888    LRGB01000115    JAL01838.1    KZS20779.1    GDIQ01210462    JAK41263.1    GDIP01129085    JAL74629.1    GDIQ01102702    JAL49024.1    GDIQ01007444    JAN87293.1    GDIP01145085    JAJ78317.1    GDIP01147699    GDIQ01184315    JAJ75703.1    JAK67410.1   

Proteomes

UP000283053    UP000053240    UP000218220    UP000036403    UP000053097    UP000279307    + More
UP000000311    UP000242457    UP000192223    UP000078541    UP000007755    UP000078492    UP000005203    UP000075809    UP000078540    UP000005205    UP000235965    UP000078542    UP000053105    UP000076502    UP000007266    UP000215335    UP000007151    UP000015103    UP000019118    UP000030742    UP000000305    UP000076858   

Pfam

PF13639   zf-RING_2        + More
PF02225   PA

Interpro

IPR013083   Znf_RING/FYVE/PHD        + More
IPR003137   PA_domain       
IPR001841   Znf_RING       

Gene 3D

3.30.40.10    

ProteinModelPortal

A0A1E1WVK6   A0A3S2NIR9   A0A1E1WQF6   A0A194RKH0   A0A2A4JQ86   A0A2W1BWU1   + More
A0A0C9QY57   A0A0J7NEF8   A0A026WDU9   E1ZWF2   A0A2A3EAX2   A0A1W4WUL7   V9IIJ1   A0A195EW65   F4WV10   A0A151J1N6   E9J9L8   A0A088AHH3   A0A1W4WUB3   A0A151WT35   A0A195BS18   A0A158NNT3   A0A2J7PE15   A0A2J7PE22   A0A151I7N6   A0A310S6D2   A0A0M8ZR78   A0A154NZR8   D7EL38   A0A232FEL3   A0A1B6M4I7   A0A1Y1LIE5   A0A212FEQ1   A0A224XNQ8   A0A0V0GAY0   T1HBC2   N6UAC4   E9GUD5   A0A0N8AZC6   A0A0P5VCK9   A0A0P5MYQ8   A0A0P5IU71   A0A0P5TJ08   A0A0P5RE42   A0A0N8EP78   A0A0P5EC08   A0A0P5FIL4  

PDB

5ZC4     E-value=1.53414e-17,     Score=219

KEGG

101738329    K15692 E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RNF13

GO

GO:0016021   GO:0016874   GO:0006511   GO:0061630   GO:0030433   GO:0005515   GO:0008270   GO:0006355   GO:0003676   GO:0000166   GO:0046872   GO:0016020   GO:0016876   GO:0043039  

Length:

365

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

24.53841

Exp number, first 60 AAs:

0.00402

Total prob of N-in:

0.10853

outside

1  -  138

TMhelix

139  -  161

inside

162  -  365

 

 

Pi

182.540418

Theta

156.454854

Tajima's D

0.468913

CLR

0.799117

CSRT

0.511424428778561

Interpretation

Uncertain