SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09302
Annotation
endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.134
 

Sequence

CDS
ATGGAATTGTTTATTCCCTCCTCTGAGGTGCCCGTTGGGGGTCGCAGCAGACCCTGGTATAACAATGCCAGCAGGAATGCTGCAGACCTCAAGTGGTCCGCATACGTGGCATGGGATAATGCCAGGAGACGTCAGGATCCTAACACCTCAGAGGAAAGGTGGAAATATAACGCCGCTTCCAGGTCTTACAAGAAGGTTATTGCCAAGGCGAAGTCCGAGCACGTTACTAGATTTGGCGAGCGACTAAAGAGCTATCCCTCTGGGAGCGGTGCTTTTTGGTCGCTCGCCAAAGCTGCAGAAGGAAACTTTTGCTGGTCTAGTCTCCCACCACTGCGCAAGTCCGATGACAGTCTGGCCCATAGTGCGAAAGAGAAGGCTGACTTTCTGGTCAAAGTCTTCGCCTCGAACTCGACTGTGGACGACGGGGGTGCCACACTACTGAACATCCCCCGGGTTCCGTCTTCATGGAAGACCGCCCACGTCCACCCTATCCCCAAGAAGGGTAACCGGTCGGACCCATCGAGCTACAGGCCTATCGCGATAACTTCCTTGCTTTCCAAGGTGATGGAGCGAATAATAAATATACAACTCCTGAAGTATCTGGAGGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGTTCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGAGCGAGGCTCTTGCTGTGAGCATTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTATCGAAGTTACCATCTTACGGAATCCCCGAGGGTCTTTGCAAGTGGATCGTTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCTCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGGCATGCATTGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTATCCGAATGGGGTGAATTGAACTTGAATCAATTCAACCCCTTTGTCATAACACCGCAATTCCAAGGAGTATCCCTGCACCCTTCCGAGAGTATCGGGATACTTGGGGTCGACATTTCGAGCGAAGTCCAATTTCGGATTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAACGAAGCGGTACTTCACACCTAGACAAAGACTTTTGCTTTATAAAGCACAAATCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCGGATATCAGCTTCTTCCATTTGACTCCATACAGAAGAGAGCCGTTCGGATTGTCGATAATCCCATTCTCACAGATCGTTTGAAACCTCTGGATCTGCGGAGGGACTTCGATTCCCTCTGTATTTTGTACCGTATGTTCCACGGGGAGTGCTCTGAGGAATTGTTTGAGATGATACCTCCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGATCATCCGCAGTGCACTTCCAGAGATCATTTTTGCCACGTACCATCAGGCTTTGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTATGGAGAGTACTTAACGGTAGGCAGCGACTTGGCTCTGCTCCTGGCATTGCTTAA
Protein
MELFIPSSEVPVGGRSRPWYNNASRNAADLKWSAYVAWDNARRRQDPNTSEERWKYNAASRSYKKVIAKAKSEHVTRFGERLKSYPSGSGAFWSLAKAAEGNFCWSSLPPLRKSDDSLAHSAKEKADFLVKVFASNSTVDDGGATLLNIPRVPSSWKTAHVHPIPKKGNRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGVLLVYLTHRWAEALESKSEALAVSIDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIVSFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDGMHWHALDDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLNQFNPFVITPQFQGVSLHPSESIGILGVDISSEVQFRIHLEGKAKLASKMLGVLNRTKRYFTPRQRLLLYKAQIRPRVEYCSHLWAGAPGYQLLPFDSIQKRAVRIVDNPILTDRLKPLDLRRDFDSLCILYRMFHGECSEELFEMIPPSRFYHRTARHRSRVHPYYLEPLRSSAVHFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLNGRQRLGSAPGIA

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF04939   RRS1
PF01585   G-patch
PF00002   7tm_2
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR028082   Peripla_BP_I       
IPR007023   Ribosom_reg       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR036291   NAD(P)-bd_dom_sf       
IPR002347   SDR_fam       
IPR020904   Sc_DH/Rdtase_CS       
IPR000832   GPCR_2_secretin-like       
IPR017981   GPCR_2-like       
SUPFAM
SSF56219   SSF56219        + More
SSF53822   SSF53822       
SSF54928   SSF54928       
SSF51735   SSF51735       
Gene 3D
PDB
6AR3     E-value=0.0257543,     Score=90

Ontologies

Topology

Length:
607
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00371
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00011
outside
1  -  607
 
 

Population Genetic Test Statistics

Pi
30.994987
Theta
47.850049
Tajima's D
0.876014
CLR
0
CSRT
0.632868356582171
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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