SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09301  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003435
Annotation
PREDICTED:_PAX3-_and_PAX7-binding_protein_1_[Bombyx_mori]
Location
Bomo_Chr15(+):15453851-15470735      View in EpiBrowser
Transcription factor
GCFC
Location in the cell
Nuclear   Reliability : 3.348
 

Sequence

CDS
ATGTCATTATTTCGTAAACCGAGGAAGATCCAGCGACGCGTGTTCTGTGCCGATGATGATGAGGAAGATGGTGAGCCCGAAGCTCCACCTCCGCCGGTCATCAGCCAAGAGAAGGAGGTTAAAGAGAAGAAATCAGTTAAAACAACTGCCCTACTTAGTTTTGCAGATGAAGAAGAAGAAGAATGTGAAGTCTTCAAAGTGAAGAAGTCCTCGCAGAGTAAGAGAATTTCCAAAAGGAGAGACAAGGAGAAAAAACGTCCGTTTGATGGTGATAATAACAGATATGACAATAATGGGCATGAGGACACCAACGACAATGGTGTAATACCTATGGAGGTGGATGAACAGAAGCCTAAAAAGAAGAAAATAACACTAGAAGGACTGATACTATCGGGCAGAGAGGCTCTGGCTGCTGATGGAGCCGGAGATATCTCTGATGATGATGAGCCTGATGAAGGGGGCAAGTTCCCTCAGTACCGCCCTGAGTCGGTGAGGGCTGCACTGGCGGTCGCGGCCGGCGACATACCCGACGCCGCGCTCATCCACGCCGCTAGAAAGACGCGACAGCAGGCTCGCGAGCTAGGTGGTGATTACGTTCCGCTGAAGCCGGAAGCTGGCCCTGGGTCCAGACTGGTCAGAGACGATGACGGGTCCGGTGATGACGAGGAAGAAGGTAGGATAGCTGTCAGAGGCCTTGAACTGCCCAGCGATAGACCACAACGTGGGACAGCGGCCGCGACTCCTGAGGAAGAATTGAATAGTGACGTCGAAGAGTGGGAGGAGCAACAACTACAAAAAGCAAGACCTGTTATTGCCGACATCACAGGCGATAATACAGAAGTGAACCCATTCGCGGTGCCTCTTCCGGTGGCGAGCACGAAGACGCCCCTCCGCCCGCTGCTGGTGGACTCGGAGCGAGCCCCGGCCTCCGCGCAGGACCTGGTCGACGCGCTACGCAACCGGATGGAGGAGCTGCGGGGCGAGCGTGCGGAGGCGCAGTGCCGGCGGGCGGCGGGCGCGGGGCGGCTGGCGGGCGCGGTGCGGGCGCGGGACACGCGGGCCGCCCGCCGCGCCGCCCTGGACACGGCGTACCGGCGCGCGCAGGCCGCCCGGGGCTACCTCACCGACCTCATCGAGTGTCTCGACGAGAAGATGCCGAAGCTAGAAGCACTAGAAGCGAGAGCGCTGGCGATGCACAAGAGAAGATGCGATTTCCTGGTGGAGAGGAGACGCGCGGACGTCCGCGACCAGGCGCAGGACGTGCTGGCCATGGCCGCTCGTCCCGGATCAGTCAAACCTGTTGATTCCGAAGAGAAGATACGCAGAGCAGCAGAACGCGAGGGTAGGAGACGAGCTCGACGCCTCAAGAGAGAGGCCACTGCTGCCGCAGCAGGCGCTCACGTCAGGCACAGGGACGGCGACTCTAGCGATGATGAACTGCCTCCGCATGAGCTACACCACTATACGCAGGAGAGAGCCGCAATTCGCGCTGAGTCAGCACAGCTATTCTCGGACGCGCTGTCAGCGTGGCGCGGCGTGCGCGGCGTGTGCAGGCGGCTGGCGAGGTGGCGCGCCGCCGACCCCGCGCTGTACTGTGACGCGTACGTCGCGGACTCCCTGCCGCGACTGTTGGCGCCCTACGTGCGACACGAGATGATATTATGGAATCCTCTGGCTGACGAAGATAACGAAGACTATGAGAGAATGGATTGGTACAAATGCTTGATGATGTATGGCGTTCGTAACGAGAAGACGTCAAGCGATTCTTCAGATTCTGATATGGAGCACGACGGTCACACTGTGGTCACGGAGAGCTCCGTGCGAGACGACATCGACCTCATGCTTGTACCCACTATTGTCGGGAGGGTGGTCATACCTAAACTCACAGAGCTGGTGGAGCAGGCGTGGGACCCGATGTGCGTGCGCGCGTGCGTGCGGCTGCGTGCGCTAGTGTACCGCGCCGCCGCCGTGCCCCGCGCCCGCCCCGCGCTGGCCCGCCTGGCCACGGCGCTGCACGCCGCGCTGCACTCTGCGCTCAACGCCGACGTGTTCCTGCCTGCGCTGCCGCCTGCGTCAGTACCCTACTGTTGTAGCATACCCGATCCCACGGACAGAATGGAAAGCAGTCGACGTCGCCCCAAACACGTCATTTCGGATCCTCCCGATCCACTAACGGTGCTTTTAGGTATCTCAAGCACCGATCACCGTTCTCGTCGAATCCATGCGCTCCGCTTGCGACAAAGGACTCTACGAGTAAATTAA
Protein
MSLFRKPRKIQRRVFCADDDEEDGEPEAPPPPVISQEKEVKEKKSVKTTALLSFADEEEEECEVFKVKKSSQSKRISKRRDKEKKRPFDGDNNRYDNNGHEDTNDNGVIPMEVDEQKPKKKKITLEGLILSGREALAADGAGDISDDDEPDEGGKFPQYRPESVRAALAVAAGDIPDAALIHAARKTRQQARELGGDYVPLKPEAGPGSRLVRDDDGSGDDEEEGRIAVRGLELPSDRPQRGTAAATPEEELNSDVEEWEEQQLQKARPVIADITGDNTEVNPFAVPLPVASTKTPLRPLLVDSERAPASAQDLVDALRNRMEELRGERAEAQCRRAAGAGRLAGAVRARDTRAARRAALDTAYRRAQAARGYLTDLIECLDEKMPKLEALEARALAMHKRRCDFLVERRRADVRDQAQDVLAMAARPGSVKPVDSEEKIRRAAEREGRRRARRLKREATAAAAGAHVRHRDGDSSDDELPPHELHHYTQERAAIRAESAQLFSDALSAWRGVRGVCRRLARWRAADPALYCDAYVADSLPRLLAPYVRHEMILWNPLADEDNEDYERMDWYKCLMMYGVRNEKTSSDSSDSDMEHDGHTVVTESSVRDDIDLMLVPTIVGRVVIPKLTELVEQAWDPMCVRACVRLRALVYRAAAVPRARPALARLATALHAALHSALNADVFLPALPPASVPYCCSIPDPTDRMESSRRRPKHVISDPPDPLTVLLGISSTDHRSRRIHALRLRQRTLRVN

Summary

Uniprot
A0A194PKT5   A0A194RJ26   A0A3S2PI52   E0VJZ4  
Pubmed
26354079    20566863   
EMBL
KQ459602    KPI93613.1    KQ460106    KPJ17828.1    RSAL01000026    RVE52073.1    + More
DS235235    EEB13700.1   
Proteomes
UP000053268    UP000053240    UP000283053    UP000009046   
Pfam
PF07842   GCFC
Interpro
IPR022783   GCFC_dom        + More
IPR012890   GCFC       
ProteinModelPortal
A0A194PKT5   A0A194RJ26   A0A3S2PI52   E0VJZ4  

Ontologies

KEGG
101745121    K13211 GC-rich sequence DNA-binding factor | (RefSeq) PAX3- and PAX7-binding protein 1
GO
GO:0003700   GO:0003677   GO:0005634   GO:0006355   GO:0005515   GO:0003676   GO:0000166   GO:0046872   GO:0016020   GO:0016876   GO:0043039  
PANTHER
PTHR12214  

Topology

Length:
753
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00466
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00027
outside
1  -  753
 
 

Population Genetic Test Statistics

Pi
295.828521
Theta
168.433361
Tajima's D
0.234988
CLR
0.892704
CSRT
0.434078296085196
Interpretation
Uncertain
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