SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09292  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003429
Annotation
PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX23_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.036
 

Sequence

CDS
ATGGCCCGAGACAGAAGTCCTGAACGGCGGAGGTCAAGATCACGAGATAGAAGAGATCGGGATCGTTACGATGAACGCGAATCGTATCGTGAAAAAGTAAAGCGCAGGGACAGGTCTAAAAGCCCTAAAAAAGATGCGGATAAAGCTCGAAGCCCTTCTAGAAAAGATCGCGATCGTTCTAGGAGTCCACTACGTAAAGAACGCGGTCGTTCGCGCAGCCCTAAGAAACGTGACGGCAAAGACAAAGATCGACGTTACGAAGACAAGGAAAAGAGTAGATCAAAAAAAGAAGATGAAATGGAGGAAGACACTGCAGACATGAAGAAAGAGGATGAATCCATAGATAAAAAACCAATTAAAAAAGAGCCTTTGTCCTTAGAAGAACTACTTGCTAAGAAAAAGGCTGAGGAAGAAGCCCGCAGTAAGCCAGTATTTCTTACCAAAGAGCAACGAGCACAGATAGCTTTGGAGAAACGGCGTCAAGAAGTAGAAGCTATAAGAGCTAATACTGATAAGCCTCAAGTCACTATTGATTTAACAGGTCCGTCAAGACGGGAAGAAGATAAAAGGCACAGAGAAGAACGTGAAAAAGATAGAGAAAAGGAACGTCGAGAGGAACGGGAAAGGAAATATGAAGAGAGGAAAGCCTATTCAGATCGTCGAGAACCAAAAAAAGATAATGAAGAGACATCTAAAACAAAAGATAAAGAAAGAGAAGAAGAGGCTATTAAAGCTCGTTACTTAGGTATAGTAAAGAAAAAGCGTAGAGTAAGACGGCTGAATGACAGGAAATTTGTTTTTGACTGGGATGCGTCAGAAGATACATCAAATGATTATAATGTTTTGTACAAAGAAAGACATCAAGTACAATTCTTTGGTCGTGGACACATTGCTGGTATAGATATCAAGTCTCAAAAGAAAGACCATAGCAAATTCTATGGGAATCTTTTAGAAAAGCGCAGAACTGAGTTAGAGAAAGAACAAGAAAAACTACGCTTGAAGAAAGTGAAGAAGAAGGAAGACAAGCAAAAGTGGGATGATAGACACTGGTCTGAGAAAGATGTGGATGAGATGACAGAGCGTGATTGGAGGATATTCAGGGAAGACTACAATATTACCTTAAAAGGAGGTAAAATTCCTAACCCTATACGTTCTTGGAAGGAAGCTCCCTTGCATACTGACATTATGGACATAATCAACAAAGTTGGATATAAGAGCCCAACTCCTATTCAAAGGCAGGCTATTCCAATTGGATTACAGAACCGTGACATTATTGGTGTTGCTGAAACTGGTTCCGGTAAAACATTGGCATTCCTTATACCATTACTTACATGGATTCAATCTCTGCCAAAGAGTGAACGTATGGAAGATGCTGACCAAGGACCTTATGCTATAATTTTAGCTCCAACACGTGAATTGGCTCAACAAATCGAAGAAGAAACTAATAAATTTGGTATTCCTCTTGGTATCACATCAGTAGTGGTTGTTGGAGGTTTATCTCGTGAAGAACAAGGTTTTAAGCTGAGGTTAGGCTGTGAGATTGTCATTGCCACTCCCGGTCGTCTTATTGATGTCTTAGACAACAGATATTTAGTACTAAACCGTTGTACCTATGTTGTTCTTGATGAAGCTGATCGGATGATTGATATGGGTTTTGAACCGGATGTTCAAAAAATCCTGGAATACATGCCTGTATCGAACATAAAACCTGATAGTGATGCAGCTGAAGATGCTTCAGTATTGCTTGCCAATTATAACACAAAAAAGAAATACCGACAAACTGTGATGTTTACGGCAACAATGCCTCCGGCTGTAGAGCGGCTGGCTAGAAGTTATCTCAGAAGACCGGCTATTGTATATATTGGATCTGTAGGAAAACCAGTAGACAGAACTGAACAAATAGTCTACATGATAGGCGAGAATGAAAAACGTAGAAAACTTACAGAGATTTTGCAGCGTGGTGTCGAACCACCCATTATTATTTTTGTTAACCAGAAAAAAGGTGCAGATGTTCTTGCAAAGGGACTTGAAAAACTTGGTTTCAATGCCTGTACGCTGCATGGTGGTAAAGGCCAAGAACAACGTGACTTTGCACTTGCCAGTCTCAAAGGGGGCGCTAAAGATATCCTCGTGGCGACAGACGTGGCAGGTCGTGGTATTGACATTAAAGATGTCAGTATGGTCATTAATTACGATATGGCGAAGACTATTGAAGACTACACTCATCGTATCGGCCGTACCGGTCGTGCAGGAAAAACTGGTAAAGCTATGTCCTTTGTTACAAAAGAAGACTCCGCATTGTTCTATGATCTGAAGCAGGTTTTGTTGGCAAGTTCCGTATCTACGTGTCCACCGGAACTTATGAACCACCCTGAGGCTCAACATAAGCCAGGGACAGTCGTAACAAAGAAGAGACGTGAAGAGATGATATTCGCTTGA
Protein
MARDRSPERRRSRSRDRRDRDRYDERESYREKVKRRDRSKSPKKDADKARSPSRKDRDRSRSPLRKERGRSRSPKKRDGKDKDRRYEDKEKSRSKKEDEMEEDTADMKKEDESIDKKPIKKEPLSLEELLAKKKAEEEARSKPVFLTKEQRAQIALEKRRQEVEAIRANTDKPQVTIDLTGPSRREEDKRHREEREKDREKERREERERKYEERKAYSDRREPKKDNEETSKTKDKEREEEAIKARYLGIVKKKRRVRRLNDRKFVFDWDASEDTSNDYNVLYKERHQVQFFGRGHIAGIDIKSQKKDHSKFYGNLLEKRRTELEKEQEKLRLKKVKKKEDKQKWDDRHWSEKDVDEMTERDWRIFREDYNITLKGGKIPNPIRSWKEAPLHTDIMDIINKVGYKSPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLTWIQSLPKSERMEDADQGPYAIILAPTRELAQQIEEETNKFGIPLGITSVVVVGGLSREEQGFKLRLGCEIVIATPGRLIDVLDNRYLVLNRCTYVVLDEADRMIDMGFEPDVQKILEYMPVSNIKPDSDAAEDASVLLANYNTKKKYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPELMNHPEAQHKPGTVVTKKRREEMIFA

Summary

Similarity
Belongs to the DEAD box helicase family.
EMBL
BABH01023966    ODYU01004261    SOQ43946.1    NWSH01002527    PCG68075.1    KZ149923    + More
PZC77656.1    KQ459602    KPI93607.1    KQ460106    KPJ17821.1    AGBW02015002    OWR40730.1    JTDY01002953    KOB70418.1    GBYB01003638    JAG73405.1    EF710645    ACE75181.1    GECL01003310    JAP02814.1    GFTR01007942    JAW08484.1    GDKW01001615    JAI54980.1    CH902620    EDV30846.1    GBGD01000582    JAC88307.1    DS235854    EEB18879.1    AXCM01007543    AXCM01007544    GFDF01007684    JAV06400.1    CCAG010009526    KQ976709    KYM77044.1    GGFJ01002099    MBW51240.1    KK107238    QOIP01000007    EZA54700.1    RLU20164.1    CH477223    EAT47218.1    GL888280    EGI63364.1    ADTU01003648    ADTU01003649    JXJN01023086    CVRI01000037    CRK93433.1    CH954179    EDV54773.1    KQ983089    KYQ47615.1    ADMH02000223    ETN67319.1    GEDC01024069    GEDC01014865    JAS13229.1    JAS22433.1    AJWK01008903    CM002910    KMY90840.1    KQ762882    OAD55310.1    JRES01000441    KNC31110.1    CH480822    EDW55637.1    AE014134    BT021222    AAF53680.2    AAX33370.1    KQ414615    KOC68576.1    CH933807    EDW11541.1    CM000158    EDW90296.1    AXCN02000606    AAZX01006436    GAHY01000396    JAA77114.1    GECZ01024923    JAS44846.1    GBRD01013514    GDHC01003797    JAG52312.1    JAQ14832.1    AAAB01008964    JXUM01047375    JXUM01047376    KQ561516    KXJ78316.1    JXUM01113167    KQ565663    KXJ70804.1    KA648450    AFP63079.1    CH963920    EDW77741.2    KZ288340    PBC27775.1    KQ434796    KZC05749.1    DS231930    EDS27249.1    DS231823    EDS26588.1    GFXV01002503    MBW14308.1    UFQS01000281    UFQT01000281    SSX02377.1    SSX22752.1    CM000361    EDX05387.1    AY060822    AAL28370.1    CP012523    ALC39559.1    KK852439    KDR23888.1    CH940649    EDW64968.2    GBHO01034028    JAG09576.1    ABLF02026334    GEZM01042244    JAV80025.1    GAMC01009538    GAMC01009536    JAB97017.1    KQ980882    KYN11947.1    CH379060    EAL33653.3    KQ981261    KYN44140.1    GBXI01011815    JAD02477.1    GDHF01025936    JAI26378.1    GAKP01014939    JAC44013.1    CH916368    EDW03396.1    OUUW01000004    SPP78997.1    GECU01035717    JAS71989.1    KQ971343    EFA04449.1    NEVH01004413    PNF39597.1    GL438386    EFN69083.1   
Pfam
PF00271   Helicase_C        + More
PF00270   DEAD
Interpro
IPR014001   Helicase_ATP-bd        + More
IPR000629   RNA-helicase_DEAD-box_CS       
IPR001650   Helicase_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR027417   P-loop_NTPase       
SUPFAM
SSF52540   SSF52540       
PDB
6QX9     E-value=0,     Score=2168

Ontologies

Topology

Length:
812
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02112
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00105
outside
1  -  812
 
 

Population Genetic Test Statistics

Pi
163.941362
Theta
182.31108
Tajima's D
-0.755521
CLR
1.228218
CSRT
0.184090795460227
Interpretation
Uncertain
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