Silkworm Genome Informatics Database

Gene

KWMTBOMO09284

Pre Gene Modal

BGIBMGA003425

Annotation

PREDICTED:_FERM?_RhoGEF_and_pleckstrin_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]

Location

Bomo_Chr15(+):15071815-15084397 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.16 Nuclear Reliability : 1.027

CDS

ATGAGTATAAGTTTCGAAAACACGTGGGGCCGCGAGGTGTCGGCGCTGGCGGGCGCGGGCGGGGGCGGGGAGGCGGGGGCGGGCGGTGTGCTGGCGCGCGCGTGCCTAGCGCTGGAGCCACTCGCGCTGCCCGCCGGCGCCTTCCTGCACCGCCTCGAGCGCGCGCTCACCGCCAGCCCCGCCGAAACAGAAGAACCGGAATATAGAAGAATAGCGGAGTATCTTTATGATTATTTATCAAGTACAGCGGATGCGTACGGCGAGTACGTGGAGCGCGCGGGCTCGCTGGCGGCGCTGGTGGAGAGCGTGCGGCGCCGCAGCGCGCCCGCCGCCTCGCTGTGCGCGCGCACGGAGCACGCCGCGCCGCTGCTGCTGCCCTGTCTGCTGCTGCGGCCCCTGCACCGCCTGCTGCACTACCACCACCTCGCACAAGAACTGTGCAAGCAATCATCCGGTCCGTGGTGCTCGGCGGCGCTGGAGACCGCCGGCGCGCTGGCGGAGGCGGCCCGGCAGCAGCTACAGCATGGCGAGAACCACGCCACGCTCTGTCATCTACAAAGACACGTTGCTGGTTACGACAAGTTGCTGGTCGCTGATAGAGAGTTTCTGCGGATGGGTTGCGTTTACAAACATTCTAGTAGAGGACTGTTGCAGAGGATGTTGTTTCTGTTTAACGACGTGCTGATAGAGGCGTCGAAGTCCGGCGGCGTGCAGTTCCGCGCGCACGCCGTGCGACCGCTGCGGGCGCTGCGGGTGCGCCAAGCCGACGCGCCCTTCGCCTTCGCGCTCGCCGATGATGATCAAACTCTAGTGTTCAACGCGAGCAACGAGCGTGAGTTCGAGGGCTGGTTCCGGACGCTAGACCGTGCGATACAGCGGGCGCACGATGACGATAACACTGCAATAGACACGCAACTGACGCCCTACGAGATGGAAGTGGAGGACGGCACGTGCGCGTCGGGCGGCGGCGGGCTGGCGCACGTGTGCTGGCACCGCGCCACCAGCCTCTCCAGGGACCAGCTGCACCTCGCCATGAGGACGCAGTTGTCCGGGTACTTACTCCGCAAATTCAAGAAGTCCCCGGGCTGGCAGAAGCTGTGGGTCGTGTTCGCGGTGTTCACTCTGTTCTTCTACAAGAGTTGGCAGGATGATACTCCTTTGGCGTCTCTACCGTTGTTAGGGTACTCTGTAGGCCCTCCCAGTTCGGACGACGGTATCGAGAAAGATTTTGTATTTAAACTGCACTACAAGAATCACGTTTACTTCTTCAGGGCGGACAGTTACTATACGTATAACCGGTGGACAGAAGTACTACAAACGGCGATGCTGCGAAACATTTAA

Protein

MSISFENTWGREVSALAGAGGGGEAGAGGVLARACLALEPLALPAGAFLHRLERALTASPAETEEPEYRRIAEYLYDYLSSTADAYGEYVERAGSLAALVESVRRRSAPAASLCARTEHAAPLLLPCLLLRPLHRLLHYHHLAQELCKQSSGPWCSAALETAGALAEAARQQLQHGENHATLCHLQRHVAGYDKLLVADREFLRMGCVYKHSSRGLLQRMLFLFNDVLIEASKSGGVQFRAHAVRPLRALRVRQADAPFAFALADDDQTLVFNASNEREFEGWFRTLDRAIQRAHDDDNTAIDTQLTPYEMEVEDGTCASGGGGLAHVCWHRATSLSRDQLHLAMRTQLSGYLLRKFKKSPGWQKLWVVFAVFTLFFYKSWQDDTPLASLPLLGYSVGPPSSDDGIEKDFVFKLHYKNHVYFFRADSYYTYNRWTEVLQTAMLRNI

Uniprot

A0A2W1BY80 A0A437BNU6 A0A194PR46 A0A212ELH2

Pubmed

28756777 26354079 22118469

EMBL

KZ149923 PZC77646.1 RSAL01000026 RVE52060.1 KQ459602 KPI93600.1 + More
AGBW02014061 OWR42335.1

Proteomes

UP000283053 UP000053268 UP000007151

Pfam

PF00169   PH        + More
PF08736   FA
PF00621   RhoGEF
PF00373   FERM_M
PF09380   FERM_C
PF09379   FERM_N

Interpro

IPR011993   PH-like_dom_sf        + More
IPR000219   DH-domain
IPR001849   PH_domain
IPR035899   DBL_dom_sf
IPR035963   FERM_2
IPR014847   FERM-adjacent
IPR019749   Band_41_domain
IPR041788   FARP1/FARP2/FRMD7_FERM_C
IPR014352   FERM/acyl-CoA-bd_prot_sf
IPR000299   FERM_domain
IPR029071   Ubiquitin-like_domsf
IPR018980   FERM_PH-like_C
IPR019748   FERM_central
IPR000798   Ez/rad/moesin-like
IPR018979   FERM_N
IPR019747   FERM_CS

SUPFAM

SSF48065   SSF48065        + More
SSF47031   SSF47031
SSF54236   SSF54236

Gene 3D

1.20.900.10 2.30.29.30 1.20.80.10

CDD

cd14473 FERM_B-lobe
cd13193 FERM_C_FARP1-like

ProteinModelPortal

A0A2W1BY80 A0A437BNU6 A0A194PR46 A0A212ELH2

PDB

4GZU E-value=7.14764e-58, Score=568

KEGG

101736960 K06082 FERM, RhoGEF and pleckstrin domain protein 2 | (RefSeq) FERM, RhoGEF and pleckstrin domain-co

GO

GO:0005089 GO:0035023 GO:0008092 GO:0019898 GO:0016021 GO:0000166 GO:0046872 GO:0016020 GO:0016876 GO:0043039

Length:

446

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.38214

Exp number, first 60 AAs:

0.4268

Total prob of N-in:

0.02531

outside

1 - 446

Pi

240.004097

Theta

162.694349

Tajima's D

1.540539

CLR

0.31312

CSRT

0.795510224488776

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics