Silkworm Genome Informatics Database

Gene

KWMTBOMO09276

Pre Gene Modal

BGIBMGA003318

Annotation

PREDICTED:_replication_factor_C_subunit_1_[Papilio_polytes]

Location

Bomo_Chr15(-):14963999-14976164 View in EpiBrowser

Full name

Replication factor C subunit 1

Location in the cell

Nuclear Reliability : 4.432

CDS

ATGTCTAAGGATATAAGATCATTTTTTATCACAACGAAGAAACCTGTAAAGTCCAAGGAAGCAGTTCCTGATGATGATGATATTATTCCTGAATCTCCTGATGTACAAATTAAAAAGAAGAAAAAAGAAGCAAGGAAGAAAAGAGTTATATTAGATGACTCAGATGATGAAATACAAACGAAAAAACCAAAAAAATCGGAAACACACTTAAATAAAAAAAACAAATCTACTGCAGAATTAAAAGAAGTGAAACCGATAGATTTATTTGGAAATGCACCCATCATAAGAACTGAGCCCATAGTCAAAAAAGAAAAGAACAAAACAGAGTTAGGAATACATTCGGATGATGAATTCGAAAAGAGTCTTCTTGAAATAGATGAGATTGATCATCTAGAAAAAAATAAAAATATTGATTTCACACCCTTAGAAAATGGAAACAATGATAAATCACACGAAAGAAAACTGCAAAAAGAAATGAAACAAAAAGAAAGTATTAAATTAGACAAAGATTCATTACCTTCTTTGAAAGATAAAGAGAAGAAAACAGATAGCTACAATGTTAATAATTTAAAAAACAAAAGCATAATAGATGAAGTTAAGGAAGGTAATAAAAGAAAATTCTCTGAATTTATTGAGACGAACATTAAAGACGAAAATGCTGTTAGCAAAAAAATTAAAATAGAAAAAAAAGATAAAGACGAGAGTTTCAGTTCAAAAGTAGAAAGTGATTTAGAAATGAATTCTTCAGCAATAGATGATGAATCTAGCAAGAAGATAACGAAAAATAGAGGAAATAAGAGTTTAAACGAGTCAGTATTATCGGATGAAGAGAGGCATCAACGTAGAGTACAATCTGCTGCATTATATAAGAAATATCTCAACAGATCAGCACCTAAACATTTAGGATCCAAAGAAATTCCTGTGGGTGCGCCGGACTGTCTTAAAGATTGTGCATTCCTACTGACTGGAGTTTTGGATTCGTTTGAGAGGGAAGAAATCGAGGAGGCTATTAAAAGATATGGTGGAACAGTTAAACCTGGTGTTAGCAGGAAGGTAAACTACGTTCTGGTTGGTGAAGACCCAGGACCCGCAAAGATTGCTAAGGCGACAGACTTGGGCATCCCCATATTAAACGAAGACGAGTTCCTAAAATTGATCTCCGATTCTGTAAACAATACTAAACTTACTACCAGAGATAAAGGTCTAAATGAAAAAAATATTGCATCTAAATCAAAGGATGAAAAAGAGAGGAAATCTGATAAATCTAGCAGTAAAGAAAGGAAGAAAGATAAATCAAAGAGTCCTATTAAGATTAAGGAGGAAAATCGTAATTCTACATCTAAGCTTTCTGATGACAATGTCCAAAATCAAGTTAAAACATTGAATTCAGAAAAACAATCAAGTTCAAGGGAATCGGTGTCTAGTTTAGGAATAGGTTTGAAATGTGAACAGAATCATGATACCAAATGTAATAAGTACATGTGGGTGGATAAATACAAACCGCAGAATGTAAAACAAATAATCGGGCAGCACGGCGATTCTAGTAATGTTAAAAAATTAATAAATTGGCTGACGAAATGGTACGTGAATAGAAAAGCCAAGCTGCCAAAGCCCAGTCCTTGGGCGAAGAATGATGATGGAGGCTACTTCAAGGCGGCCCTGCTCTCCGGACCTCCAGGAGTTGGTAAGACGACCACAGTGTCGCTCGTGTGCAGAGAACTAGGATTCGACGCAGTCGAGTTCAACGCGTCCGACACGAGAAATAAATCGTTGCTCAAAGAACAAATCGGCGAGCTGCTGGCCACGACGTCACTGTCCGGATATGCCAAAGGCGACACGAGCAAGCAGGCCGTCTCCAAGAAACACGTTTTGGTAATGGACGAAGTCGACGGCATGGCGGGAAATGAGGATAGAGGCGGCCTGCAAGAGTTGATAAATCTGATAAAATCAACATCAGTGCCAGTGATATGTATGTGTAACGACAGAAACAGTACGAAGATGAGGTCCCTGGTCAACTACTGCTATGATTTGAGGTTCAACAGACCAAGAGTGGATCAGATCAGGGCCGCGATGATGTCGATATGTTTCAAAGAAGGAATCAAAGTGGCCCCGGACGTGTTGACGCAGCTGATCGTCGCTTCTAACCAAGACGTGCGGCAGACCCTCAACTTACTCTCGATGTGGGCTGTCGACGAGGCGTTGGCCAGTGTGGACAAGTTAAAAAGAGACGCAAACACCACGAAGAAGGATGTCAAATTGGGTCCATGGGAGGCAGTAAGGAAAGTGTTCTCCGCAGAAGAACACAAGACTATGAGCATTCACGATAAAAGCGATTTGTTCTTTTACGACTACAACCTCGCTCCTCTGTTCGTGCAGGAGAATTACTTGCAAGTTGCACCACACTGTCCCAAACACGAGGTTCTAGAGAGATTTAGTAAAGCGGCCGACAGTATCAGTATAGGCGACATGGTTTCTGCGAGAATCAGAGGCAGCCAGGCGTGGAGTCTTCTGCCTATTCAGGCCATGTACAGCTCGGTGCTCCCGGGACACGCGGTGTCGGGTCACGTGGTCGGCCAAATCCAGTTCCCGGGCTGGCTCGGGAAGAACTCTCGCGCCAACAAAATGCACCGGCTCGCCCAGGAGATACACGCTCACACAAGACTCAGCACCTCAGGGTCGAAATCTTCAATATACCTCGACTACTCATCACATCTAAGAGACGCAATAGTCAATCCACTTATCAATGAGAAAACAAACGGAATCACAAAGTCCTTAGAAATATTGGAATCCTATCATCTCCTGAGAGAAGATCTGGATTCTTTGATTGAGCTATCTTTGTGGCCTGGACAGAGAAACCCGACAGTTTTGATTGAAGCCAAGGTGAAAGCTGCTATGACTCGAACGTACAATAAGACGGCTAGCGCTCTGCCATACGCGCCGGGAGCCGTGAAGAAAGGTCGAAATAGAAACGATGACGAAATGGATGACGGTGATGAAGCAGGTGATGTGACCGAGGAAGAGAACAGCGACGCAGAGAATGACGCATTTATAAAGGTAAAGTATTGA

Protein

MSKDIRSFFITTKKPVKSKEAVPDDDDIIPESPDVQIKKKKKEARKKRVILDDSDDEIQTKKPKKSETHLNKKNKSTAELKEVKPIDLFGNAPIIRTEPIVKKEKNKTELGIHSDDEFEKSLLEIDEIDHLEKNKNIDFTPLENGNNDKSHERKLQKEMKQKESIKLDKDSLPSLKDKEKKTDSYNVNNLKNKSIIDEVKEGNKRKFSEFIETNIKDENAVSKKIKIEKKDKDESFSSKVESDLEMNSSAIDDESSKKITKNRGNKSLNESVLSDEERHQRRVQSAALYKKYLNRSAPKHLGSKEIPVGAPDCLKDCAFLLTGVLDSFEREEIEEAIKRYGGTVKPGVSRKVNYVLVGEDPGPAKIAKATDLGIPILNEDEFLKLISDSVNNTKLTTRDKGLNEKNIASKSKDEKERKSDKSSSKERKKDKSKSPIKIKEENRNSTSKLSDDNVQNQVKTLNSEKQSSSRESVSSLGIGLKCEQNHDTKCNKYMWVDKYKPQNVKQIIGQHGDSSNVKKLINWLTKWYVNRKAKLPKPSPWAKNDDGGYFKAALLSGPPGVGKTTTVSLVCRELGFDAVEFNASDTRNKSLLKEQIGELLATTSLSGYAKGDTSKQAVSKKHVLVMDEVDGMAGNEDRGGLQELINLIKSTSVPVICMCNDRNSTKMRSLVNYCYDLRFNRPRVDQIRAAMMSICFKEGIKVAPDVLTQLIVASNQDVRQTLNLLSMWAVDEALASVDKLKRDANTTKKDVKLGPWEAVRKVFSAEEHKTMSIHDKSDLFFYDYNLAPLFVQENYLQVAPHCPKHEVLERFSKAADSISIGDMVSARIRGSQAWSLLPIQAMYSSVLPGHAVSGHVVGQIQFPGWLGKNSRANKMHRLAQEIHAHTRLSTSGSKSSIYLDYSSHLRDAIVNPLINEKTNGITKSLEILESYHLLREDLDSLIELSLWPGQRNPTVLIEAKVKAAMTRTYNKTASALPYAPGAVKKGRNRNDDEMDDGDEAGDVTEEENSDAENDAFIKVKY

Similarity

Belongs to the activator 1 large subunit family.

Uniprot

H9J1D1 A0A2Z5TRL9 A0A087TZ17

Pubmed

19121390 26760975

EMBL

BABH01023936 BABH01023937 FX985859 BBA93746.1 KK117391 KFM70356.1 + More

Proteomes

UP000005204 UP000054359

PRIDE

H9J1D1

Pfam

PF00533   BRCT        + More
PF00004   AAA
PF08519   RFC1

Interpro

IPR003959   ATPase_AAA_core        + More
IPR008921   DNA_pol3_clamp-load_cplx_C
IPR027417   P-loop_NTPase
IPR003593   AAA+_ATPase
IPR001357   BRCT_dom
IPR036420   BRCT_dom_sf
IPR013725   DNA_replication_fac_RFC1_C
IPR012178   RFC1

SUPFAM

SSF48019   SSF48019        + More
SSF52113   SSF52113
SSF52540   SSF52540

Gene 3D

3.40.50.10190

CDD

cd00027 BRCT

ProteinModelPortal

H9J1D1 A0A2Z5TRL9 A0A087TZ17

PDB

1SXJ E-value=9.63591e-84, Score=794

KEGG

101736557 K10754 replication factor C subunit 1 | (RefSeq) replication factor C subunit 1

PATHWAY

03030    DNA replication - Bombyx mori (domestic silkworm)
03420    Nucleotide excision repair - Bombyx mori (domestic silkworm)
03430    Mismatch repair - Bombyx mori (domestic silkworm)

GO

GO:0005634 GO:0006260 GO:0005524 GO:0006281 GO:0005663 GO:0003689 GO:0003677 GO:0016020 GO:0016876 GO:0043039

Subcellular location

Nucleus

Length:

1021

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01344

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1021

Pi

179.607555

Theta

153.667091

Tajima's D

0.392287

CLR

0.287973

CSRT

0.486675666216689

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics