Gene

KWMTBOMO09275

Pre Gene Modal

BGIBMGA003422

Annotation

hypothetical_protein_OBRU01_13126_[Operophtera_brumata]

Location

Bomo_Chr15(+):14960735-14961373      View in EpiBrowser

Full name

Gamma-tubulin complex component      

Location in the cell

Mitochondrial   Reliability : 1.686

CDS

ATGGCTGCGGCTTCGAGAAAATCGCTTGGACAGCTAATTCAACAGGGATGGAACGAGATCCCTGAAATTTTTGCCTCAACAGGCTTAGGTCTTGTTGGTATTGGTCTGGGTGTTCTTGGAGCATACAATTACGTGAAGAACGATGGAGACAATAGAAGGTACAAGGGTACCTATGTGGTGATGAGGCCGGACGACCCAAGAGTGAAGCTTATACGCAAGGAGTAA

Protein

MAAASRKSLGQLIQQGWNEIPEIFASTGLGLVGIGLGVLGAYNYVKNDGDNRRYKGTYVVMRPDDPRVKLIRKE

Similarity

Belongs to the TUBGCP family.

Uniprot

H9J1N5   A0A2H1VKS4   A0A2W1BAZ9   A0A0L7L8V3   S4NVN0   A0A194PR41   + More
A0A194RJ06   A0A2M3Z3X9   A0A182QZ54   A0A182J4H4   A0A182FSV4   A0A182I8M0   D3TS47   T1DF07   A0A2M4AFJ0   A0A2M4C5R2   A0A084W782   A0A182XX58   A0A182P2Q0   A0A182NG01   A0A182WUZ5   Q7PS85   A0A182RRT8   A0A182VIH5   A0A1A9UHV9   A0A182KBQ8   W5J5J8   A0A1Q3FKH9   A0A1B0BMN8   A0A194PLI6   A0A194RJS8   B0W6P0   A0A1A9ZB87   A0A1L8EER6   A0A1I8P6Q2   A0A067R1G1   A0A023ED60   Q1HRA0   A0A1I8MHI4   B4PZW7   B3NUG7   A0A1W4UQJ5   B3MZP9   A0A1A9WB06   A0A0L7L8F7   U5EP65   Q29GX9   B4H2F0   B4M3R2   B4JXL9   B4L385   B4NEU5   A0A3B0K2P6   A0A1L8DUY8   B4R6U7   B4IJS0   Q9W380   A0A1B0D6S6   A0A0M3QZG1   A0A139WIC3   A0A1W4XVM0   A0A1D2MKI9   A0A232EM37   T1GX67   A0A336MFN9   A0A182W138   A0A2S2QK80  

Pubmed

19121390    28756777    26227816    23622113    26354079    20353571    + More
24438588    25244985    12364791    14747013    17210077    20920257    23761445    24845553    24945155    26483478    17204158    17510324    25315136    17994087    17550304    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18362917    19820115    27289101    28648823   

EMBL

BABH01023936    ODYU01002854    ODYU01003096    SOQ40854.1    SOQ41418.1    KZ150539    + More
PZC70577.1    JTDY01002253    KOB71790.1    GAIX01011476    JAA81084.1    KQ459602    KPI93595.1    KQ460106    KPJ17808.1    GGFM01002452    MBW23203.1    AXCN02000343    APCN01003086    CCAG010009137    EZ424249    ADD20525.1    GAMD01003301    JAA98289.1    GGFK01006161    MBW39482.1    GGFJ01011350    MBW60491.1    ATLV01021173    KE525314    KFB46076.1    AAAB01008844    EAA06017.4    ADMH02002125    ETN58673.1    GFDL01006934    JAV28111.1    JXJN01017007    KPI93594.1    KPJ17807.1    DS231849    EDS36871.1    GFDG01001587    JAV17212.1    KK852815    KDR15806.1    JXUM01104763    GAPW01006788    KQ564912    JAC06810.1    KXJ71583.1    DQ440194    CH477193    ABF18227.1    EAT48534.1    EAT48535.1    CM000162    EDX02173.1    CH954180    EDV46290.1    CH902635    EDV33850.1    KOB71787.1    GANO01004864    JAB55007.1    CH379064    EAL31980.1    CH479204    EDW30517.1    CH940651    EDW65437.2    CH916376    EDV95118.1    CH933810    EDW07013.1    CH964239    EDW82264.1    OUUW01000015    SPP88537.1    GFDF01003830    JAV10254.1    CM000366    EDX17477.1    CH480849    EDW51278.1    AE014298    AY071733    AAF46455.1    AAL49355.1    AJVK01026235    CP012528    ALC49363.1    KQ971342    KYB27682.1    LJIJ01000956    ODM93549.1    NNAY01003442    OXU19407.1    CAQQ02091942    UFQS01001166    UFQT01001166    SSX09320.1    SSX29222.1    GGMS01008389    MBY77592.1   

Proteomes

UP000005204    UP000037510    UP000053268    UP000053240    UP000075886    UP000075880    + More
UP000069272    UP000075840    UP000092444    UP000030765    UP000076408    UP000075885    UP000075884    UP000076407    UP000007062    UP000075900    UP000075903    UP000078200    UP000075881    UP000000673    UP000092460    UP000002320    UP000092445    UP000095300    UP000027135    UP000069940    UP000249989    UP000008820    UP000095301    UP000002282    UP000008711    UP000192221    UP000007801    UP000091820    UP000001819    UP000008744    UP000008792    UP000001070    UP000009192    UP000007798    UP000268350    UP000000304    UP000001292    UP000000803    UP000092462    UP000092553    UP000007266    UP000192223    UP000094527    UP000215335    UP000015102    UP000075920   

PRIDE

H9J1N5    Q9W380   

Pfam

PF17681   GCP_N_terminal        + More
PF04130   GCP_C_terminal
PF00270   DEAD
PF00567   TUDOR

Interpro

IPR040457   GCP_C        + More
IPR042241   GCP_C_sf       
IPR007259   GCP       
IPR041470   GCP_N       
IPR035437   SNase_OB-fold_sf       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR002999   Tudor       
IPR027417   P-loop_NTPase       

SUPFAM

SSF52540   SSF52540       

Gene 3D

1.20.120.1900     2.40.50.90    

ProteinModelPortal

H9J1N5   A0A2H1VKS4   A0A2W1BAZ9   A0A0L7L8V3   S4NVN0   A0A194PR41   + More
A0A194RJ06   A0A2M3Z3X9   A0A182QZ54   A0A182J4H4   A0A182FSV4   A0A182I8M0   D3TS47   T1DF07   A0A2M4AFJ0   A0A2M4C5R2   A0A084W782   A0A182XX58   A0A182P2Q0   A0A182NG01   A0A182WUZ5   Q7PS85   A0A182RRT8   A0A182VIH5   A0A1A9UHV9   A0A182KBQ8   W5J5J8   A0A1Q3FKH9   A0A1B0BMN8   A0A194PLI6   A0A194RJS8   B0W6P0   A0A1A9ZB87   A0A1L8EER6   A0A1I8P6Q2   A0A067R1G1   A0A023ED60   Q1HRA0   A0A1I8MHI4   B4PZW7   B3NUG7   A0A1W4UQJ5   B3MZP9   A0A1A9WB06   A0A0L7L8F7   U5EP65   Q29GX9   B4H2F0   B4M3R2   B4JXL9   B4L385   B4NEU5   A0A3B0K2P6   A0A1L8DUY8   B4R6U7   B4IJS0   Q9W380   A0A1B0D6S6   A0A0M3QZG1   A0A139WIC3   A0A1W4XVM0   A0A1D2MKI9   A0A232EM37   T1GX67   A0A336MFN9   A0A182W138   A0A2S2QK80  

KEGG

101736429    no KO assigned | (RefSeq) uncharacterized LOC101736429

GO

GO:0016021   GO:0007020   GO:0005874   GO:0043015   GO:0000922   GO:0005815   GO:0005737   GO:0003676   GO:0005524  

PANTHER

PTHR19302  

Subcellular location

  

Length:

74

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.77804

Exp number, first 60 AAs:

22.77804

Total prob of N-in:

0.02875

POSSIBLE N-term signal

sequence

outside

1  -  22

TMhelix

23  -  45

inside

46  -  74

 

 

Pi

239.614347

Theta

174.742014

Tajima's D

1.167895

CLR

0

CSRT

0.709314534273286

Interpretation

Uncertain