Gene

KWMTBOMO09255  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003328

Annotation

SCP-related_protein_[Bombyx_mori]

Location

Bomo_Chr15(-):14300084-14307826      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.986

CDS

ATGAGTAGACTATTCACCTCTAAATCGAACGACTTCGAAAACGAAGCATTGGAAGTCCATAATGAATACAGACGAGAGCATGGCGTTTCGCCTCTGGTGATCAATAAAGAAATCAGTAAAATTAGTCAGAAATGGGCTGAGGAACTTGCTAAAAGAGACAGTCTCGCCTACAGTCTGAACCAAAGGTATGGTGAAAGTGTCTACTGCGGATGGTCACCTGACCCAAATACAAAGATCAAAGCTAGAGACTGCGTAGATAAATGGTACAGCGAAATCAATGAGTTTTCCTTTGGCAAGGAGCCTGAAGTGTTGAACTGTGGTCATTTCACACAAATAATCTGGAGATCTACGAGTGAATTGGGGATAGGAAGTGCGAAGAGCAAGACTGGAAAGCTTTATGTCGTCGCAAACTACTATCCACCAGGAAATTACAGCGGGCTATTCGTTAAAAATGTCCTACCCCCTGGGGCTATGCAGTTCAGCTCTAGCTACAATAGTTCTCCTAGAGAATCGAACAACAATTTGGCTCCTCCTTCACCAAACAGAATATCTCCTAGAGGATCCTTCACTAGTTCTGCCCCTTCGTCTCCAAGTCAAAGAAGTAGCAAGAACATAACTGATCTAGCATCAGATTTTGTGAGCAAATTCAGATCAACTTCAATTTCCACAGAGAAATTCGAAGAAGATTTCTTAGCCGCTCACAACGACCACAGACAAAACCATGGCGTCAAACCTCTTGTACTAAACAAGAAGTTGTGTAAATACGCCGAAGAATGGGCGAAAGCGTTGGCCAAAAAAGGCCAGACTGAACACAGAGATCAAAACGAATATGGCGAAAATATATTTTACGCTTGGTCCACGGATCCAGCATTCACCGTTTCTGGGCGTGATCCTGTCGATAAATGGTACAGCGAGATTAATAATCATAAATTTGGTCGAGAACCCACGAATTTAGATTCTGGACATTTCTCTCAAGTTATATGGGAGGAAACTAGAGAAATCGGCGTGGGCGTTGCTAAATCGAAGGAAGGACAGGTTTATGTTGTAGCATACTATTCTCCTCCTGGTAACGTTATTGGTAGTTTCACAAAAAATGTCAAACCACCTATTAATTAG

Protein

MSRLFTSKSNDFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEELAKRDSLAYSLNQRYGESVYCGWSPDPNTKIKARDCVDKWYSEINEFSFGKEPEVLNCGHFTQIIWRSTSELGIGSAKSKTGKLYVVANYYPPGNYSGLFVKNVLPPGAMQFSSSYNSSPRESNNNLAPPSPNRISPRGSFTSSAPSSPSQRSSKNITDLASDFVSKFRSTSISTEKFEEDFLAAHNDHRQNHGVKPLVLNKKLCKYAEEWAKALAKKGQTEHRDQNEYGENIFYAWSTDPAFTVSGRDPVDKWYSEINNHKFGREPTNLDSGHFSQVIWEETREIGVGVAKSKEGQVYVVAYYSPPGNVIGSFTKNVKPPIN

Similarity

Belongs to the CRISP family.

Uniprot

Q0PRV2   A0A2A4K1N6   A0A2A4JZU7   A0A437BNR3   A0A0L7L672   A0A2H1W7K5   + More
A0A194RIZ1   A0A212EM55   A0A2A4K1B1   A0A194PKP8   A0A1W4XSN5   A0A1W4XSJ1   A0A1W4XHH4   N6TKH9   A0A2J7RP42   A0A2J7RP53   A0A2J7RP43   A0A2J7RP46   A0A067RAH6   A0A2P8XJ29   A0A1Y1KJX9   T1HW69   A0A1Q3FYG9   Q1DGT9   Q16YM4   A0A069DUC8   K7J7T0   A0A0P4VR96   R4FPR5   A0A310SMI6   A0A224XCR7   A0A232ETY4   A0A2S2QIA4   A0A023F9N6   A0A026WYC3   A0A2M3ZFC5   A0A2M3ZZ96   A0A0K8TRK5   A0A195D3B8   E2AZZ7   A0A0V0GBZ8   A0A3L8E236   A0A2M3ZZA6   A0A151J9Q6   A0A158P2G0   A0A182FI66   A0A2M3ZF87   A0A2M3ZFD3   A0A195BAZ4   A0A2M4CS63   A0A336LPQ9   A0A151WTS1   A0A2M4CSL3   A0A154PFP1   A0A182K4M8   E2CA42   A0A2M4BIJ0   A0A0L7QTV7   A0A2M4BIJ9   A0A2H8TUA9   A0A182NHH2   A0A182GUY0   A0A2A3EGX5   A0A2S2NQP2   A0A182P3P5   A0A182GMH2   A0A195FIG8   A0A023ETG4   A0A182XZ50   A0A088A261   A0A182MN72   A0A0N0BF04   A0A336KA56   J9K274   A0A0C9QFE7   U5EXX7   A0A182WIM3   C3Z9G6   A0A182R4P7   A0A182J243   A0A182U325   A0A182I3K0   A0A182UN82   A0A182X3G8   A0A182KRN1   A0A0A9W7S7   A0NBH7   A0A2P8XYE0   A0A146LC92   A0A0A9Y4Q6   A0A0A9Z420   B0VZU4   A0A084WF09   A0A1B6C4Z3   A0A1B6CU36   A0A1B6CY41   A0A1B6GU91   A0A1B0CHQ1   A0A1B6MU13  

Pubmed

26227816    26354079    22118469    23537049    24845553    29403074    + More
28004739    17510324    26334808    20075255    27129103    28648823    25474469    24508170    26369729    20798317    30249741    21347285    26483478    24945155    25244985    18563158    20966253    25401762    12364791    14747013    17210077    26823975    24438588   

EMBL

DQ777748    ABG76067.1    NWSH01000313    PCG77542.1    PCG77541.1    RSAL01000026    + More
RVE52044.1    JTDY01002739    KOB70811.1    ODYU01006829    SOQ49038.1    KQ460106    KPJ17793.1    AGBW02013924    OWR42556.1    PCG77543.1    KQ459602    KPI93578.1    APGK01021195    KB740293    KB630380    KB631427    ENN80954.1    ERL83573.1    ERL84290.1    NEVH01002140    PNF42605.1    PNF42604.1    PNF42606.1    PNF42607.1    KK852594    KDR20657.1    PYGN01001954    PSN32010.1    GEZM01081296    JAV61719.1    ACPB03013636    GFDL01002420    JAV32625.1    CH900419    EAT32369.1    CH477513    EAT39749.1    GBGD01001513    JAC87376.1    AAZX01003354    AAZX01004135    GDKW01002201    JAI54394.1    GAHY01000098    JAA77412.1    KQ763574    OAD54988.1    GFTR01006211    JAW10215.1    NNAY01002199    OXU21825.1    GGMS01008272    MBY77475.1    GBBI01000998    JAC17714.1    KK107069    EZA60751.1    GGFM01006481    MBW27232.1    GGFK01000565    MBW33886.1    GDAI01000604    JAI16999.1    KQ976885    KYN07405.1    GL444289    EFN61000.1    GECL01000497    JAP05627.1    QOIP01000002    RLU26088.1    GGFK01000491    MBW33812.1    KQ979404    KYN21683.1    ADTU01007313    ADTU01007314    ADTU01007315    GGFM01006441    MBW27192.1    GGFM01006450    MBW27201.1    KQ976530    KYM81703.1    GGFL01003992    MBW68170.1    UFQS01000105    UFQT01000105    SSW99652.1    SSX20032.1    KQ982753    KYQ51243.1    GGFL01003993    MBW68171.1    KQ434893    KZC10632.1    GL453920    EFN75197.1    GGFJ01003735    MBW52876.1    KQ414736    KOC62088.1    GGFJ01003734    MBW52875.1    GFXV01005992    MBW17797.1    JXUM01090004    JXUM01090005    KQ563810    KXJ73250.1    KZ288260    PBC30469.1    GGMR01006891    MBY19510.1    JXUM01074676    JXUM01074677    KQ562845    KXJ75017.1    KQ981523    KYN40193.1    GAPW01001005    JAC12593.1    AXCM01000276    KQ435816    KOX72638.1    SSW99653.1    SSX20033.1    ABLF02033289    ABLF02033292    GBYB01002124    JAG71891.1    GANO01000691    JAB59180.1    GG666599    EEN50895.1    APCN01000213    GBHO01039750    GBHO01005022    GBRD01003118    JAG03854.1    JAG38582.1    JAG62703.1    AAAB01008807    EAU77602.2    PYGN01001166    PSN37032.1    GDHC01013952    JAQ04677.1    GBHO01029623    GBHO01019074    JAG13981.1    JAG24530.1    GBHO01005013    JAG38591.1    DS231815    EDS35186.1    ATLV01023269    KE525341    KFB48803.1    GEDC01028716    GEDC01015195    JAS08582.1    JAS22103.1    GEDC01020417    JAS16881.1    GEDC01018906    JAS18392.1    GECZ01003765    JAS66004.1    AJWK01012579    AJWK01012580    AJWK01012581    GEBQ01000567    JAT39410.1   

Proteomes

UP000218220    UP000283053    UP000037510    UP000053240    UP000007151    UP000053268    + More
UP000192223    UP000019118    UP000030742    UP000235965    UP000027135    UP000245037    UP000015103    UP000008820    UP000002358    UP000215335    UP000053097    UP000078542    UP000000311    UP000279307    UP000078492    UP000005205    UP000069272    UP000078540    UP000075809    UP000076502    UP000075881    UP000008237    UP000053825    UP000075884    UP000069940    UP000249989    UP000242457    UP000075885    UP000078541    UP000076408    UP000005203    UP000075883    UP000053105    UP000007819    UP000075920    UP000001554    UP000075900    UP000075880    UP000075902    UP000075840    UP000075903    UP000076407    UP000075882    UP000007062    UP000002320    UP000030765    UP000092461   

PRIDE

Q0PRV2   

Pfam

PF00188   CAP        + More
PF01156   IU_nuc_hydro

Interpro

IPR034113   SCP_GAPR1-like        + More
IPR001283   CRISP-related       
IPR035940   CAP_sf       
IPR018244   Allrgn_V5/Tpx1_CS       
IPR014044   CAP_domain       
IPR036452   Ribo_hydro-like       
IPR001910   Inosine/uridine_hydrolase_dom       
IPR002413   V5_allergen-like       

SUPFAM

SSF55797   SSF55797        + More
SSF53590   SSF53590       

Gene 3D

3.40.33.10     3.90.245.10    

CDD

cd05382  SCP_GAPR-1_like

ProteinModelPortal

Q0PRV2   A0A2A4K1N6   A0A2A4JZU7   A0A437BNR3   A0A0L7L672   A0A2H1W7K5   + More
A0A194RIZ1   A0A212EM55   A0A2A4K1B1   A0A194PKP8   A0A1W4XSN5   A0A1W4XSJ1   A0A1W4XHH4   N6TKH9   A0A2J7RP42   A0A2J7RP53   A0A2J7RP43   A0A2J7RP46   A0A067RAH6   A0A2P8XJ29   A0A1Y1KJX9   T1HW69   A0A1Q3FYG9   Q1DGT9   Q16YM4   A0A069DUC8   K7J7T0   A0A0P4VR96   R4FPR5   A0A310SMI6   A0A224XCR7   A0A232ETY4   A0A2S2QIA4   A0A023F9N6   A0A026WYC3   A0A2M3ZFC5   A0A2M3ZZ96   A0A0K8TRK5   A0A195D3B8   E2AZZ7   A0A0V0GBZ8   A0A3L8E236   A0A2M3ZZA6   A0A151J9Q6   A0A158P2G0   A0A182FI66   A0A2M3ZF87   A0A2M3ZFD3   A0A195BAZ4   A0A2M4CS63   A0A336LPQ9   A0A151WTS1   A0A2M4CSL3   A0A154PFP1   A0A182K4M8   E2CA42   A0A2M4BIJ0   A0A0L7QTV7   A0A2M4BIJ9   A0A2H8TUA9   A0A182NHH2   A0A182GUY0   A0A2A3EGX5   A0A2S2NQP2   A0A182P3P5   A0A182GMH2   A0A195FIG8   A0A023ETG4   A0A182XZ50   A0A088A261   A0A182MN72   A0A0N0BF04   A0A336KA56   J9K274   A0A0C9QFE7   U5EXX7   A0A182WIM3   C3Z9G6   A0A182R4P7   A0A182J243   A0A182U325   A0A182I3K0   A0A182UN82   A0A182X3G8   A0A182KRN1   A0A0A9W7S7   A0NBH7   A0A2P8XYE0   A0A146LC92   A0A0A9Y4Q6   A0A0A9Z420   B0VZU4   A0A084WF09   A0A1B6C4Z3   A0A1B6CU36   A0A1B6CY41   A0A1B6GU91   A0A1B0CHQ1   A0A1B6MU13  

PDB

4AIW     E-value=5.29984e-23,     Score=266

KEGG

778478    no KO assigned | (RefSeq) SCP-related protein

GO

GO:0005576   GO:0005615   GO:0003676   GO:0008270   GO:0000413   GO:0003723   GO:0003677   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR10334  

Length:

371

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01522

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01551

outside

1  -  371

 

 

Pi

280.628519

Theta

181.579322

Tajima's D

0.542572

CLR

0.098644

CSRT

0.524273786310684

Interpretation

Uncertain