Gene

KWMTBOMO09239

Annotation

T18197_reverse_transcriptase-like_protein_-_silkworm

Location

Bomo_Chr15(+):13826608-13830626      View in EpiBrowser

Full name

Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2       + More
Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM      

Alternative Name

Retrovirus-related Pol polyprotein from type I retrotransposable element R2
Retrovirus-related Pol polyprotein from type II retrotransposable element R2DM

Location in the cell

Mitochondrial   Reliability : 2.117

CDS

ATGGCACGAGGCGAAATACCCGAAGTTCTACGGCAGTGCCGAACCGTCTTTGTGCCTAAGGTGGAAAGACCAGGTGGACCGGAGGAATATCGACCGATCTCGATCGCGTCGATTCCCCTGAGACACTTTCACTCCATCTTGGCCCGGAGGCTGTTGGCTTGCTGCCCCCCTGACGCACGACAGCGTGGATTTATCTGCGCCGACGGTACTCTGGAGAATTCCGCAGTACTGGACGCGGTGCTTGGGGATAGCAGGAAGAAGCTGCGGGAATGTCACGTGGCGGTGCTAGACTTCGCCAAGGCATTCGACACTGTGTCTCACGAGGCACTTGTCGAATTGCTGAGGTTGAGGGGCATGCCCGTACAGTTCTGCGGCTACATTGCTCACCTATACGATACGGCGTCCACCACCTTAGCCGTGAACAATGAAATGAGCAGCCCTGTGAAAGCGGGACGAGGGGTTCGTCAAGGGGACCCTCTGTCGCCGATACTCTTCAACGTGGTGATGGACCTCATCCTGGCTTCCCTGCCGGAGAGGGTCGGGTATAGGTTGGAGATGGAACTCGTGTCCGCTCTGGCCTATGCTGACGACCTAGTCCTGCTTGCGGGGTCGAAGGTAGGGATGCAGGAGTCCATCTCTGCTGTGGACTGTGTCGGTAGGCAGATGGGCCTACGCCTGAATTGCAGGAAAAGCGCAGTTCTGTCTATGATACCAGATGGCCACCGCAAGAAGCATCACTACCTGACTGAGCGAACCTTCAATATTGGAGGTAAGCCGCTCAGGCAGGTGAGTTGTGTTGAGCGGTGGCGATATCTTGGTGTCGATTTTGAGGCCTCTGGATGCGTGACATTAGAGCATAGTATCAGTAGTGCTCTGAATAACATCTCAAGGGCACCTCTCAAACCCCAACAGAGGTTGGAGATTTTGAGAGCTCATCTGATTCCGAGGTTCCAGCACGGTTTCGTGCTTGGAAACATCTCGGATGACAGATTGAGAATGCTCGATGTCCAAATCCGGAAAGCAGTCGGACAGTGGCTTAGGCTACCGGCGGATGTGCCCAAGGCATACTATCACGCCGCAGTTCAGGACGGCGGCTTAGCGATCCCATCGGTACGAGCGACCATCCCGGACCTCATTGTGAGGCGTTTCCGGGGGCTCGACTCGTCACCATGGTCAGTGGCAAGAGCCGCCGCCAAATCTGATAAGATTCGTTGGTAA

Protein

MARGEIPEVLRQCRTVFVPKVERPGGPEEYRPISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLGDSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPVQFCGYIAHLYDTASTTLAVNNEMSSPVKAGRGVRQGDPLSPILFNVVMDLILASLPERVGYRLEMELVSALAYADDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSAVLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFRGLDSSPWSVARAAAKSDKIRW

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Keywords

Complete proteome   Endonuclease   Hydrolase   Metal-binding   Nuclease   Nucleotidyltransferase   Reference proteome   RNA-directed DNA polymerase   Transferase   Transposable element   Zinc   Zinc-finger   Aspartyl protease   Protease  

Feature

chain  Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2

Uniprot

V9H052   Q5K671   Q8MY64   A0A023EX97   A0A0J7KIJ3   A0A0J7KIZ7   + More
A0A0C9QX33   A0A336N1I0   Q03278   K7JR53   A0A2S2Q7J7   L7M1A0   A0A023EX96   A0A023EXT5   A0A293LGQ3   A0A139W9T2   A0A131YXA3   K7JCX5   A0A1Z5LEY2   B7QB19   A0A293M998   B8Y0J4   A0A293LU33   K7JPM5   A0A0R4WRV8   A0A1E1X218   P16423   A0A1E1X328   Q76IP1   A0A224XHH5   A0A077B0I4   A0A0A9VQ34   A0A0K8S7M2   Q76IP0   O44319   A0A146KWA5   A0A131Z2I9   K7JX42   A0A1E1XIZ0   K7JWL4   J9LE19   A0A096XIE1   A0A293LBM6   A0A1A9VZG3   A0A2H1BS63   K7JWP8   A0A2R7WW67   C6F3W3   O44316   A0A183A234   I7AEJ4   I7A3V0   A0A2R7WRT1   A0A0A9XZ39   A0A1Z5L9B1   A0A0K8TDX3   Q03279   A0A443SGA8   A0A0J7N6L9   A0A443S7I1   O44323   A0A3P6R8S6   J9M3R0   A0A183SLF3   A0A183Q4Z8   A0A183NB95   A0A443SAG7   A0A0J7KJU5   A0A1E1X8Y7   K7JYZ8   A0A2R7WW68   A0A443S3P0   I7BCK2   A0A3R7C400   A0A183TLM2   Q76IN9   A0A3R7CLP2   Q4QQD8   A0A419QBI8   A0A419PZW4   A0A1Z5L6R9   A0A3R7HBS5   W5M4C0   A0A3B5M253   I7B001   A0A2H1BSA8   A0A075A624   A0A183M8D5   A0A3B4CI67   A0A2H1BRT6   A0A3B4CL88   A0A085MQH5   A0A3P7MZ95   A0A0X3P462   A0A0X3PE22   A0A0J7K8Q3   A0A3B4CU99   A0A3B4CKG8   A0A3B3ZBK2   A0A1V1H6Q5  

Pubmed

2439905    14999096    25474469    8383793    20075255    25576852    + More
18362917    19820115    26830274    28528879    19350401    28503490    1690812    12949131    25401762    9515960    10331276    26823975    9927458    22564473    15939396    24929829    25463417    27662593   

EMBL

M16558    AAB59214.1    AF436853    AAQ04479.1    AB076841    BAC01114.1    + More
GBBI01004849    JAC13863.1    LBMM01007077    KMQ90064.1    LBMM01006940    KMQ90176.1    GBYB01008309    JAG78076.1    UFQS01003262    UFQT01003262    SSX15424.1    SSX34793.1    L00950    AAZX01002322    GGMS01004512    MBY73715.1    GACK01007407    JAA57627.1    GBBI01004905    JAC13807.1    GBBI01004906    JAC13806.1    GFWV01002964    MAA27694.1    KQ971997    KYB24671.1    GEDV01005279    JAP83278.1    AAZX01010802    AAZX01015897    GFJQ02001120    JAW05850.1    ABJB010902163    ABJB010964728    DS898493    EEC16041.1    GFWV01012635    MAA37364.1    FJ461304    ACJ71597.1    GFWV01007503    MAA32233.1    AAZX01024756    AAZX01024918    JQ082370    AFM44926.1    GFAC01005869    JAT93319.1    X51967    GFAC01005513    JAT93675.1    AB097121    BAC82589.1    GFTR01008394    JAW08032.1    KJ958674    AIL01110.1    GBHO01045037    GBHO01045036    JAF98566.1    JAF98567.1    GBRD01016678    JAG49149.1    AB097122    BAC82590.1    AF015815    AAC34903.1    GDHC01017848    JAQ00781.1    GEDV01003881    JAP84676.1    AAZX01023288    GFAC01000014    JAT99174.1    AAZX01023287    ABLF02008889    KF925878    AHN53448.1    GFWV01001114    MAA25844.1    KZ442244    PIS78050.1    AAZX01010801    AAZX01015898    KK855758    PTY23787.1    EU854578    ACJ46647.1    AF015685    AAB94032.1    UZAN01004728    VDP32110.1    JN937617    AFO19996.1    JN937619    AFO19998.1    KK855289    PTY21830.1    GBHO01018958    JAG24646.1    GFJQ02003336    JAW03634.1    GBRD01002048    JAG63773.1    L00951    NCKV01002648    RWS26564.1    LBMM01009160    KMQ88340.1    NCKV01006447    RWS23444.1    AF015819    AAC34906.1    UYRU01007376    VDK41074.1    ABLF02003433    UYSU01033097    VDL91436.1    UZAL01048126    VDP85427.1    UZAI01021487    VDP55649.1    NCKV01004782    RWS24512.1    LBMM01006509    KMQ90547.1    GFAC01003453    JAT95735.1    AAZX01010936    PTY23786.1    NCKV01009665    RWS22147.1    JN937618    AFO19997.1    NIRI01002286    RJW62659.1    UYSU01042415    VDM03756.1    AB097123    BAC82591.1    NIRI01000035    RJW73594.1    BN000800    CAJ00246.1    NIRI01000312    RJW71711.1    NIRI01001153    RJW67600.1    GFJQ02004269    JAW02701.1    NIRI01000032    RJW73696.1    AHAT01039632    JN937616    AFO19995.1    KZ442293    PIS78045.1    KL596651    KER31070.1    UZAI01007624    VDO99720.1    KZ443466    PIS77927.1    KL367913    KFD59471.1    UYRU01077406    VDN28088.1    GEEE01016792    JAP46433.1    GEEE01017779    JAP45446.1    LBMM01011712    KMQ86679.1    LC155026    BAX24488.1   

Proteomes

UP000036403    UP000002358    UP000007266    UP000001555    UP000007819    UP000091820    + More
UP000050740    UP000288716    UP000050788    UP000275846    UP000050791    UP000050790    UP000277204    UP000018468    UP000261380    UP000261440    UP000261520   

PRIDE

V9H052    Q5K671    Q8MY64    Q03278    B7QB19    P16423    + More

Pfam

PF00078   RVT_1        + More
PF00096   zf-C2H2
PF08492   SRP72
PF17004   SRP_TPR_like
PF00850   Hist_deacetyl
PF08356   EF_assoc_2
PF08355   EF_assoc_1
PF00071   Ras
PF13202   EF-hand_5

Interpro

IPR013087   Znf_C2H2_type        + More
IPR000477   RT_dom       
IPR001005   SANT/Myb       
IPR013699   Signal_recog_part_SRP72_RNA-bd       
IPR031545   SRP_TPR-like       
IPR026270   SRP72       
IPR011990   TPR-like_helical_dom_sf       
IPR037138   His_deacetylse_dom_sf       
IPR023696   Ureohydrolase_dom_sf       
IPR000286   His_deacetylse       
IPR023801   His_deacetylse_dom       
IPR036236   Znf_C2H2_sf       
IPR013567   EF_hand_assoc_2       
IPR018247   EF_Hand_1_Ca_BS       
IPR020860   MIRO_dom       
IPR013566   EF_hand_assoc_1       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR011992   EF-hand-dom_pair       
IPR002048   EF_hand_dom       

SUPFAM

SSF48452   SSF48452        + More
SSF52768   SSF52768       
SSF57667   SSF57667       
SSF52540   SSF52540       
SSF47473   SSF47473       

Gene 3D

1.25.40.10     3.40.800.20    

CDD

cd00167  SANT

ProteinModelPortal

V9H052   Q5K671   Q8MY64   A0A023EX97   A0A0J7KIJ3   A0A0J7KIZ7   + More
A0A0C9QX33   A0A336N1I0   Q03278   K7JR53   A0A2S2Q7J7   L7M1A0   A0A023EX96   A0A023EXT5   A0A293LGQ3   A0A139W9T2   A0A131YXA3   K7JCX5   A0A1Z5LEY2   B7QB19   A0A293M998   B8Y0J4   A0A293LU33   K7JPM5   A0A0R4WRV8   A0A1E1X218   P16423   A0A1E1X328   Q76IP1   A0A224XHH5   A0A077B0I4   A0A0A9VQ34   A0A0K8S7M2   Q76IP0   O44319   A0A146KWA5   A0A131Z2I9   K7JX42   A0A1E1XIZ0   K7JWL4   J9LE19   A0A096XIE1   A0A293LBM6   A0A1A9VZG3   A0A2H1BS63   K7JWP8   A0A2R7WW67   C6F3W3   O44316   A0A183A234   I7AEJ4   I7A3V0   A0A2R7WRT1   A0A0A9XZ39   A0A1Z5L9B1   A0A0K8TDX3   Q03279   A0A443SGA8   A0A0J7N6L9   A0A443S7I1   O44323   A0A3P6R8S6   J9M3R0   A0A183SLF3   A0A183Q4Z8   A0A183NB95   A0A443SAG7   A0A0J7KJU5   A0A1E1X8Y7   K7JYZ8   A0A2R7WW68   A0A443S3P0   I7BCK2   A0A3R7C400   A0A183TLM2   Q76IN9   A0A3R7CLP2   Q4QQD8   A0A419QBI8   A0A419PZW4   A0A1Z5L6R9   A0A3R7HBS5   W5M4C0   A0A3B5M253   I7B001   A0A2H1BSA8   A0A075A624   A0A183M8D5   A0A3B4CI67   A0A2H1BRT6   A0A3B4CL88   A0A085MQH5   A0A3P7MZ95   A0A0X3P462   A0A0X3PE22   A0A0J7K8Q3   A0A3B4CU99   A0A3B4CKG8   A0A3B3ZBK2   A0A1V1H6Q5  

KEGG

102466437    no KO assigned | (RefSeq) Mir3342, bmo-mir-3342; microRNA 3342

GO

GO:0003964   GO:0003676   GO:0004519   GO:0046872   GO:0004190   GO:0016021   GO:0003924   GO:0005509   GO:0005525  

PANTHER

PTHR14094  

Length:

405

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01081

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00340

outside

1  -  405

 

 

Pi

47.666044

Theta

121.735707

Tajima's D

-1.344784

CLR

0

CSRT

0.0831958402079896

Interpretation

Uncertain