Gene

KWMTBOMO09237

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr15(-):13754042-13755897      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.023 Mitochondrial   Reliability : 1.679

CDS

ATGTACCGGGGGTCGGTTCTCGGCCCCCTCTTGTGGAATATCGGGTACGACTGGGTGCTGAGGGGCGCCCTCCTCCCGGGCCTCCGCGTTATTTGTTACGCGGACGACACGTTGGTCGTGGCCCGGGGGGATGATTTTAGGGAGTCTGCCCGTCTCGCCACAGCGGGAGTGGCCCTCGTCGTCGGAAGGATAAGGAGGCTGGGTCTCGACGTGGCGCTCAATAAATCCGAGGCTCTGTGGTTTCACGGGCCGCGGAGGGCGCCACCCGTTGACACCCACATTGTGGTTGGAGGCGTCCGGATAGGGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCGTGTTGGACAGCCGGTGGGCCTTTCGTGCTCACTTTGCGGAGCTGGTCCCCCGATTGATGGGGACGGCCGGTTCTTTGAGCCGGCTGCTCCCGAATATTGGGGGACCGGATCAGGTTGTGCGCCGTCTCTACGCGGGGGTGGTGCGATCGATGGCCCTGTACGGTGCACCTGTGTGGGCTGAGCCGCGCAACCGGGCCACTATGGCTCGGTTCTTGCGCCGGCCGCAGCGCACCGTTGCCATCAGGGTCATCCGCGGATATCGCCCCGTCTCCTTCGAGGCGGCGTGTGTTTTGGCGGGGACGCCGCCATGGGAGCTGGAGGCGGAGTCGCTCGCTGCCGACTATCGGTGGCGCAGCGAGCTTCGTGCTCGGGGCGTGGCGCGGGTCCCCGAGAGTGAGCTGCGGGCGCGGAAGGCCCATTCTCGGCGGTCCGTGCTCGAGTCGTGGTCGAGGCGATTGGCCAGCCCCACGTGGGGGCTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAGGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGACGACGAGGTGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCAGCGATGAGTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGTGAGGGAAAGCTCTCCTCACTACGCGGAAACCCGCCGCCGCCGAGCAGGGGGTCGGGACCGGGGTCGTATCCGTGACCTGGCCCCCTAA

Protein

MYRGSVLGPLLWNIGYDWVLRGALLPGLRVICYADDTLVVARGDDFRESARLATAGVALVVGRIRRLGLDVALNKSEALWFHGPRRAPPVDTHIVVGGVRIGVGVQLKYLGLVLDSRWAFRAHFAELVPRLMGTAGSLSRLLPNIGGPDQVVRRLYAGVVRSMALYGAPVWAEPRNRATMARFLRRPQRTVAIRVIRGYRPVSFEAACVLAGTPPWELEAESLAADYRWRSELRARGVARVPESELRARKAHSRRSVLESWSRRLASPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGSDESWKAMLDFCECTISQKEAAGRVRESSPHYAETRRRRAGGRDRGRIRDLAP

Uniprot

Q868Q4   A0A2W1B333   Q8MY27   Q8MY33   Q8MY31   Q8MY35   + More
A0A2W1C3J5   A0A3S2N998   A0A0J7N1D9   O01419   A0A2W1BDU5   A0A0J7JZ13   A0A194R5D3   A0A0J7N7H9   A0A0J7JZF7   A0A0J7KQK3   A0A0J7KIY5   A0A0J7JWS3   A0A0J7MY07   A0A0J7KJH4   A0A0J7KJG6   A0A0J7KIW1   A0A0J7N7S8   A0A3L8DDV9   A0A0J7KIM6   A0A3L8D2G3   E2BVR6   A0A0J7KYD2   A0A0J7KLT9   A0A3S2LNH8   A0A0J7KL06   A0A0J7KPR0   A0A0J7KC11   A0A0J7K3R2   A0A0J7KGJ6   A0A0J7KWU5   A0A0J7KLH8   A0A0J7K3R6   A0A0J7KP92   A0A0J7KF37   A0A0J7JXX4   A0A0J7NMN5   A0A0J7K3F1   A0A0J7KRB8   A0A0J7KPZ3   A0A0J7N0R3   A0A0J7KFH2   A0A0J7NAV8   A0A0J7KMU1   A0A0J7NDI6   A0A0J7KF40   A0A0J7KMG5   A0A0J7MY17   A0A0J7NFZ0   A0A0J7KW81   A0A0J7KFG9   A0A1B6HLL2   X1WJY4   J9KNG8   A0A2S2N8I2   A0A3Q0JIB3   J9LJ80   D7GY87   A0A2S2NJ82   A0A2H8THF8   A0A2S2PEU2   A0A2S2PSC1   J9KHF7   F7IYU8   A0A139W939   X1WSG8   A0A2H8TIE5   V5I8F3   A0A139W9B3   A0A0J7K6Z4   A0A139W940   X1WXT5   A0A2S2PEZ7   J9K6F0   A0A2S2PBP5  

Pubmed

12644555    28756777    9092665    26354079    30249741    20798317    + More
18362917    19820115   

EMBL

AB090825    BAC57926.1    KZ150386    PZC71062.1    AB078935    BAC06462.1    + More
AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    RSAL01000481    RVE41577.1    LBMM01012027    KMQ86470.1    D85594    BAA19776.1    KZ150308    PZC71477.1    LBMM01019839    KMQ83438.1    KQ460685    KPJ12887.1    LBMM01008861    KMQ88580.1    LBMM01019838    KMQ83439.1    LBMM01004272    KMQ92618.1    LBMM01006954    KMQ90166.1    LBMM01024063    KMQ82623.1    LBMM01014132    KMQ85305.1    LBMM01006657    KMQ90417.1    LBMM01006671    KMQ90407.1    LBMM01006725    KMQ90373.1    LBMM01008682    KMQ88705.1    QOIP01000010    RLU18098.1    LBMM01007036    KMQ90099.1    QOIP01000031    RLU14697.1    GL450953    EFN80213.1    LBMM01002052    KMQ95336.1    LBMM01005733    KMQ91252.1    RSAL01003504    RVE40273.1    LBMM01006063    KMQ90967.1    LBMM01004634    KMQ92224.1    LBMM01009738    KMQ87908.1    LBMM01014956    KMQ84982.1    LBMM01007659    KMQ89538.1    LBMM01002480    KMQ94776.1    LBMM01005948    KMQ91066.1    LBMM01015018    KMQ84954.1    LBMM01004697    KMQ92167.1    LBMM01008448    KMQ88867.1    LBMM01021647    KMQ83033.1    LBMM01003245    KMQ93755.1    LBMM01015025    KMQ84953.1    LBMM01003988    KMQ92922.1    LBMM01004505    KMQ92346.1    LBMM01012412    KMQ86235.1    LBMM01008278    KMQ89009.1    LBMM01007425    KMQ89740.1    LBMM01005216    KMQ91703.1    LBMM01006496    KMQ90570.1    LBMM01008422    KMQ88894.1    LBMM01005465    KMQ91492.1    LBMM01014122    KMQ85315.1    LBMM01005474    KMQ91485.1    KMQ94772.1    LBMM01008349    KMQ88951.1    GECU01032129    JAS75577.1    ABLF02011238    ABLF02005203    ABLF02041316    GGMR01000779    MBY13398.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    KQ971864    EFA13315.2    GGMR01004600    MBY17219.1    GFXV01001748    MBW13553.1    GGMR01015354    MBY27973.1    GGMR01019609    MBY32228.1    ABLF02014530    ABLF02018586    ABLF02058000    AB593321    BAK38639.1    KQ972691    KXZ75807.1    ABLF02004597    ABLF02041324    GFXV01002090    MBW13895.1    GALX01004785    JAB63681.1    KQ972544    KXZ75869.1    LBMM01012595    KMQ86127.1    KXZ75806.1    ABLF02004854    ABLF02041317    GGMR01015159    MBY27778.1    ABLF02012448    ABLF02012450    ABLF02012455    ABLF02012460    GGMR01014195    MBY26814.1   

Proteomes

UP000283053    UP000036403    UP000053240    UP000279307    UP000008237    UP000007819    + More
UP000079169    UP000007266   

PRIDE

Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF01421   Reprolysin
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR000663   Natr_peptide       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q868Q4   A0A2W1B333   Q8MY27   Q8MY33   Q8MY31   Q8MY35   + More
A0A2W1C3J5   A0A3S2N998   A0A0J7N1D9   O01419   A0A2W1BDU5   A0A0J7JZ13   A0A194R5D3   A0A0J7N7H9   A0A0J7JZF7   A0A0J7KQK3   A0A0J7KIY5   A0A0J7JWS3   A0A0J7MY07   A0A0J7KJH4   A0A0J7KJG6   A0A0J7KIW1   A0A0J7N7S8   A0A3L8DDV9   A0A0J7KIM6   A0A3L8D2G3   E2BVR6   A0A0J7KYD2   A0A0J7KLT9   A0A3S2LNH8   A0A0J7KL06   A0A0J7KPR0   A0A0J7KC11   A0A0J7K3R2   A0A0J7KGJ6   A0A0J7KWU5   A0A0J7KLH8   A0A0J7K3R6   A0A0J7KP92   A0A0J7KF37   A0A0J7JXX4   A0A0J7NMN5   A0A0J7K3F1   A0A0J7KRB8   A0A0J7KPZ3   A0A0J7N0R3   A0A0J7KFH2   A0A0J7NAV8   A0A0J7KMU1   A0A0J7NDI6   A0A0J7KF40   A0A0J7KMG5   A0A0J7MY17   A0A0J7NFZ0   A0A0J7KW81   A0A0J7KFG9   A0A1B6HLL2   X1WJY4   J9KNG8   A0A2S2N8I2   A0A3Q0JIB3   J9LJ80   D7GY87   A0A2S2NJ82   A0A2H8THF8   A0A2S2PEU2   A0A2S2PSC1   J9KHF7   F7IYU8   A0A139W939   X1WSG8   A0A2H8TIE5   V5I8F3   A0A139W9B3   A0A0J7K6Z4   A0A139W940   X1WXT5   A0A2S2PEZ7   J9K6F0   A0A2S2PBP5  

KEGG

101737183    no KO assigned | (RefSeq) uncharacterized LOC101737183

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0005179   GO:0005576  

Length:

421

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10223

Exp number, first 60 AAs:

0.07606

Total prob of N-in:

0.00501

outside

1  -  421

 

 

Pi

28.504821

Theta

15.974287

Tajima's D

0.887558

CLR

292.591552

CSRT

0.64036798160092

Interpretation

Uncertain