Gene

KWMTBOMO09232  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003337

Annotation

ribosomal_protein_L10A_[Bombyx_mori]

Location

Bomo_Chr15(-):13692373-13694677      View in EpiBrowser

Full name

60S ribosomal protein L10a       + More
Ribosomal protein      

Location in the cell

Nuclear   Reliability : 2.233

CDS

ATGTCGTCTAAAGTGTCTCGTGACACGCTCTACGAGTGCGTGAATGCCGTTCTTCAATCCTCTAAGGACAAGAAACGTAACTTTTTGGAGACTGTAGAGCTTCAAATTGGTCTGAAGAACTATGACCCACAGAAGGACAAGCGTTTCTCCGGCACTGTAAAGCTAAAATACATACCGCGGCCGAAAATGCAAGTTTGCGTTCTTGGAGACCAGCAACATTGTGACGAGGCTAAAACCTTGAATGTGCCATGTATGGATGCTGAGGCTTTGAAAAAATTGAATAAGAACAAAAAGCTTGTCAAGAAACTGGCCAAAAAATTTGATGCTTTCCTGGCATCAGAGTCACTGATCAAGCAGATTCCCCGTTTGTTGGGTCCCGGTTTGAACAAAGCTGGTAAATTCCCTGGTCTTCTCTCCCACCAGGAGTCCATGACGCAGAAGATTGATGAAGTCAAGGGAACCATTAAGTTCCAAATGAAGAAGGTGCTGTGTCTTTCTGTAGCAGTTGGCCATGTGGACATGACTCCTGATGAGCTTGCTCAGAATGTGCATCTTTCCATCAACTTCCTTGTGTCACTGCTCAAGAAACACTGGCAGAATGTCCGATCATTGCATATGAAATCAACGATGGGACCACCCCAGAGATTGTACTAA

Protein

MSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDAEALKKLNKNKKLVKKLAKKFDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY

Similarity

Belongs to the universal ribosomal protein uL1 family.

Keywords

Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S ribosomal protein L10a

Uniprot

Q5UAS9   H9J1F0   A0A2A4K9X5   E7DZ02   A0A3G1T175   D1LYN3   + More
G0ZEB9   I4DIG4   Q963B6   I4DM79   Q5MGL4   A0A194PKP1   A0A0L7KVE8   G3LHK6   A0A3S2NXH7   S4NN71   A0A212EXS0   A0A2H1VXE3   J3JVM8   Q4GXK3   A0A0J7KHH8   U4UUZ1   A0A1B1MRQ9   A0A026W1J6   F4WJG2   A0A158NV02   A0A0C9R5K4   Q4GXK0   D2A090   A0A195BVI9   A0A195FQD5   V5I9A3   A0A336LPT6   A0A195CB65   A0A151WSW1   A0A2A3EL38   D1M7Y1   Q4GXK2   E2BMB5   E9IDF0   E2ASW6   A0A0M8ZNM6   A0A310SCZ8   A0A1B0CE41   A0A1Y1KM34   A0A0L7RJQ2   A0A1B6F3E8   A0A0A9W8G6   Q4GXJ9   A0A0C9QZX9   R4WN56   K7J119   A0A1W4WEG3   Q56FD8   Q56FD1   A0A2P8ZL84   A0A067QR95   D1FPL3   A0A1L8DS77   A0A2J7RG39   R4UM29   R4FN63   A0A0P6JN03   T1E2Y8   D3TMC2   A0A1A9Y0G4   A0A1B0B668   B0W2M0   Q1HRJ3   E0VKG9   A0A1L8EF22   A0A1B0ACF1   A0A1I8P3S1   A0A023EJY3   A0A1A9UY62   T1PGW7   A0A0X7YMP5   A0A1D2MC09   A0A182Q3U8   A0A1D2MQP6   A0A182Y6W8   A0A182P0S4   A0A182VM19   A0A182TTB8   A0A182LHE1   A0A182WYU3   Q7QHQ4   A0A182HY89   A0A1D1Y8S7   Q5MIQ8   W8CDQ9   A0A034WXR5   A0A0K8WE57   A0A0A1WJ80   A0A182K368   A0A182WFP4   A0A182RLN0   A0A182NT01   A0A182M0R7   A0A131Z7V1  

Pubmed

19121390    22651552    14668217    16023793    26354079    26227816    + More
21840855    23622113    22118469    22516182    23537049    24508170    30249741    21719571    21347285    18362917    19820115    20798317    21282665    28004739    25401762    26823975    23691247    20075255    29403074    24845553    20441151    24330624    20353571    17204158    17510324    20566863    24945155    26483478    25315136    27289101    25244985    20966253    12364791    14747013    17210077    17244540    24495485    25348373    25830018    26830274   

EMBL

AY769279    AAV34821.1    BABH01023826    NWSH01000012    PCG80879.1    HQ424705    + More
ADT80649.1    MG846888    AXY94740.1    GU084307    ACY95340.1    JF264997    AEL28828.1    AK401082    BAM17704.1    AF391092    AK402397    BAM19019.1    AY829772    AAV91386.1    KQ459602    KPI93568.1    JTDY01005421    KOB67014.1    JN383809    AEN04485.1    RSAL01000112    RVE47038.1    GAIX01012359    JAA80201.1    AGBW02011690    OWR46292.1    ODYU01005012    SOQ45478.1    BT127296    AEE62258.1    AM049020    CAJ17256.1    LBMM01007249    KMQ89908.1    KB632375    ERL94005.1    KU521363    ANS71243.1    KK107519    QOIP01000009    EZA49456.1    RLU19007.1    GL888182    EGI65740.1    ADTU01026867    GBYB01011584    JAG81351.1    AM049023    CAJ17259.1    KQ971338    EFA01731.1    KQ976401    KYM92597.1    KQ981335    KYN42631.1    GALX01003285    JAB65181.1    UFQT01000106    SSX20056.1    KQ978023    KYM97945.1    KQ982769    KYQ50881.1    KZ288227    PBC31741.1    GU120405    ACY71255.1    AM049021    CAJ17257.1    GL449185    EFN83144.1    GL762454    EFZ21428.1    GL442415    EFN63463.1    KQ435966    KOX67935.1    KQ763209    OAD55154.1    AJWK01008544    GEZM01079688    JAV62384.1    KQ414579    KOC71100.1    GECZ01025051    JAS44718.1    GBHO01042499    GDHC01021706    JAG01105.1    JAP96922.1    AM049024    CAJ17260.1    GBYB01000166    JAG69933.1    AK417031    BAN20246.1    AY961562    AAX62464.1    AY961569    AAX62471.1    PYGN01000024    PSN57249.1    KK853449    KDR07554.1    EZ419763    ACY69936.1    GFDF01004758    JAV09326.1    NEVH01004406    PNF39797.1    KC632336    AGM32150.1    ACPB03019911    GAHY01000683    JAA76827.1    GDIQ01002586    JAN92151.1    GALA01000860    JAA93992.1    EZ422574    ADD18850.1    JXJN01008987    DS231827    EDS29328.1    DQ440101    CH477993    ABF18134.1    EAT34546.1    DS235243    EEB13849.1    GFDG01001511    JAV17288.1    JXUM01084475    GAPW01004218    KQ563439    JAC09380.1    KXJ73821.1    KA647385    AFP62014.1    KC507333    AHB12456.1    LJIJ01001948    ODM90469.1    AXCN02002127    LJIJ01000701    ODM95188.1    AAAB01008816    EAA05156.3    APCN01004508    GDJX01016891    JAT51045.1    AY826152    AAV90724.1    GAMC01001516    JAC05040.1    GAKP01000369    JAC58583.1    GDHF01003174    JAI49140.1    GBXI01015844    JAC98447.1    AXCM01002628    GEDV01002031    JAP86526.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000037510    UP000283053    UP000007151    + More
UP000036403    UP000030742    UP000053097    UP000279307    UP000007755    UP000005205    UP000007266    UP000078540    UP000078541    UP000078542    UP000075809    UP000242457    UP000008237    UP000000311    UP000053105    UP000092461    UP000053825    UP000002358    UP000192223    UP000245037    UP000027135    UP000235965    UP000015103    UP000092443    UP000092460    UP000002320    UP000008820    UP000009046    UP000092445    UP000095300    UP000069940    UP000249989    UP000078200    UP000095301    UP000094527    UP000075886    UP000076408    UP000075885    UP000075903    UP000075902    UP000075882    UP000076407    UP000007062    UP000075840    UP000075881    UP000075920    UP000075900    UP000075884    UP000075883   

PRIDE

Q5UAS9    H9J1F0    Q963B6    Q4GXK3   

Pfam

PF00687   Ribosomal_L1

Interpro

IPR023674   Ribosomal_L1-like        + More
IPR002143   Ribosomal_L1       
IPR016095   Ribosomal_L1_3-a/b-sand       
IPR028364   Ribosomal_L1/biogenesis       
IPR023673   Ribosomal_L1_CS       

SUPFAM

SSF56808   SSF56808       

Gene 3D

3.40.50.790    

CDD

cd00403  Ribosomal_L1

ProteinModelPortal

Q5UAS9   H9J1F0   A0A2A4K9X5   E7DZ02   A0A3G1T175   D1LYN3   + More
G0ZEB9   I4DIG4   Q963B6   I4DM79   Q5MGL4   A0A194PKP1   A0A0L7KVE8   G3LHK6   A0A3S2NXH7   S4NN71   A0A212EXS0   A0A2H1VXE3   J3JVM8   Q4GXK3   A0A0J7KHH8   U4UUZ1   A0A1B1MRQ9   A0A026W1J6   F4WJG2   A0A158NV02   A0A0C9R5K4   Q4GXK0   D2A090   A0A195BVI9   A0A195FQD5   V5I9A3   A0A336LPT6   A0A195CB65   A0A151WSW1   A0A2A3EL38   D1M7Y1   Q4GXK2   E2BMB5   E9IDF0   E2ASW6   A0A0M8ZNM6   A0A310SCZ8   A0A1B0CE41   A0A1Y1KM34   A0A0L7RJQ2   A0A1B6F3E8   A0A0A9W8G6   Q4GXJ9   A0A0C9QZX9   R4WN56   K7J119   A0A1W4WEG3   Q56FD8   Q56FD1   A0A2P8ZL84   A0A067QR95   D1FPL3   A0A1L8DS77   A0A2J7RG39   R4UM29   R4FN63   A0A0P6JN03   T1E2Y8   D3TMC2   A0A1A9Y0G4   A0A1B0B668   B0W2M0   Q1HRJ3   E0VKG9   A0A1L8EF22   A0A1B0ACF1   A0A1I8P3S1   A0A023EJY3   A0A1A9UY62   T1PGW7   A0A0X7YMP5   A0A1D2MC09   A0A182Q3U8   A0A1D2MQP6   A0A182Y6W8   A0A182P0S4   A0A182VM19   A0A182TTB8   A0A182LHE1   A0A182WYU3   Q7QHQ4   A0A182HY89   A0A1D1Y8S7   Q5MIQ8   W8CDQ9   A0A034WXR5   A0A0K8WE57   A0A0A1WJ80   A0A182K368   A0A182WFP4   A0A182RLN0   A0A182NT01   A0A182M0R7   A0A131Z7V1  

PDB

4V6W     E-value=2.45167e-82,     Score=775

KEGG

692665    K02865 large subunit ribosomal protein L10Ae | (RefSeq) RpL10A; ribosomal protein L10A

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0015934   GO:0003723   GO:0005840   GO:0022625   GO:0000470   GO:0006260   GO:0008408   GO:0003677   GO:0016020   GO:0016876   GO:0043039  

Length:

217

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00374

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12903

outside

1  -  217

 

 

Pi

245.191148

Theta

213.013699

Tajima's D

0.422856

CLR

0.878582

CSRT

0.498075096245188

Interpretation

Uncertain