Gene

KWMTBOMO09231  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003338

Annotation

mitochondrial_28S_ribosomal_protein_S14_[Bombyx_mori]

Location

Bomo_Chr15(-):13689331-13690887      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.974

CDS

ATGAACTTAAATATCTCAATTTTAGGAAAATTCATTCTAAAATCACAATCAATAGCCGGAGTCGGGTATCAACAAGTACGGAATAAATGGGCTAACTGGCTCATGATTCGTGATGTAAAGCGACGTAGATTGAGTGCAGAGAACTTTCTTGAAAGGACCAGAGTTAATGCATTGCGGAAAAATGACATCCTCCCTGTTGAAATCAGAGAGATAGCTGACAAGCAAATCAATCAGTTTGAATGGAATGCCACACCTATGAGAATTAACAACAGATGTGTTATCACTTCACGACCCAGAGGTATAGTAAAGGAATGGCGCATGAGTCGTATAGTCTGGAGGCATCTAGCGGATTACAACAAACTCTCAGGAGTACAGAGGGCTATGTGGGGCTGA

Protein

MNLNISILGKFILKSQSIAGVGYQQVRNKWANWLMIRDVKRRRLSAENFLERTRVNALRKNDILPVEIREIADKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRAMWG

Similarity

Belongs to the carnitine/choline acetyltransferase family.

Uniprot

Q1HPY6   A0A3S2L6Y2   A0A212EXX5   A0A2A4KB43   A0A194RIX5   A0A0L7KUT0   + More
A0A2H1VXC1   H9J1F1   A0A1I8MEB8   A0A0M3QZG6   B4MA46   B4L6X2   B4JX26   A0JQ38   Q9VWI3   B4PZI4   B4I750   B3NVN3   A0A1W4VST0   W8BVV5   B3MPT6   A0A0L0C403   B5M0Y1   A0A1I8P2T0   B4NPI7   B5DL77   B4GW64   A0A1A9WXX4   A0A084VBZ6   A0A0K8UUE0   A0A023EE59   A0A1L8EH77   A0A3B0KVU7   A0A067R2A8   A0A1B0BK15   A0A1B0G1J0   T1EA22   A0A2M3ZEW7   A0A2P8XSK7   Q17DU5   A0A182FG85   A0A182LUP5   A0A2M4C347   A0A2M4AY10   A0A2M4AYA9   A0A2M4C3R1   W5J7X8   A0A182R9S4   A0A2M4C371   D6WKQ4   A0A182YFH0   A0A182UR13   A0A1Q3FCV1   A0A2C9GRW0   A0A182UCX5   A0A182KUS5   Q7PW63   A0A182X2Y7   A0A182PDF6   A0A182SFX0   A0A182K3P8   A0A2J7QL97   A0A182J4I6   B0WSJ3   A0A1A9XRZ8   A0A1Y9H9K2   A0A023EFL4   A0A182WGW9   A0A3B3QP36   F6YV30   B3N1J1   Q28D63   A0A0E9WHN3   A0A0M3KL53   A0A1L8GG11   A0A1Y1M9A5   A0A340WWG8   A0A2Y9TIM0   A0A336MQH8   A0A1B0CLF4   A0A287D5W5   A0A1S3WTS4   A0A452IPJ9   A0A401RJS9   A0A0K8TLA2   F7C1X2   A0A341CKS4   A0A2U3V8J5   A0A2Y9LRA9   A0A0Q3X046   H0WWY2   F6SVT1   A0A1U7RP09   U3K160   A0A0A9X4R2   A0A383YRE3   A0A1W5A6I2   G5ARS1   A0A2Y9DEG4  

Pubmed

22118469    26354079    26227816    19121390    25315136    17994087    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24495485    26108605    19166301    15632085    24438588    24945155    26483478    24845553    29403074    17510324    20920257    23761445    18362917    19820115    25244985    20966253    12364791    14747013    17210077    29240929    20431018    25613341    25837512    30089917    30723633    27762356    28004739    28562605    30297745    26369729    19892987    17495919    25401762    26823975    21993625   

EMBL

DQ443266    ABF51355.1    RSAL01000112    RVE47036.1    AGBW02011690    OWR46294.1    + More
NWSH01000012    PCG80882.1    KQ460106    KPJ17778.1    JTDY01005421    KOB67013.1    ODYU01005012    SOQ45480.1    BABH01023826    CP012528    ALC49339.1    CH940655    EDW66105.1    CH933812    EDW06118.1    CH916376    EDV95302.1    BT029408    ABK57065.1    AE014298    BT023293    KX532149    AAF48956.2    AAY55709.1    AHN59908.1    ANY27959.1    CM000162    EDX02140.1    CH480823    EDW56148.1    CH954180    EDV46698.1    GAMC01005502    JAC01054.1    CH902621    EDV44698.1    JRES01000940    KNC27010.1    EU930317    ACH56945.1    CH964291    EDW86427.1    CH379063    EDY72276.1    CH479193    EDW26909.1    ATLV01009878    KE524552    KFB35490.1    GDHF01022047    JAI30267.1    JXUM01053997    GAPW01005976    KQ561800    JAC07622.1    KXJ77487.1    GFDG01000785    JAV18014.1    OUUW01000044    SPP89996.1    KK852751    KDR17160.1    JXJN01015766    CCAG010002137    GAMD01001398    JAB00193.1    GGFM01006335    MBW27086.1    PYGN01001417    PSN34990.1    CH477291    EAT44567.1    AXCM01001875    GGFJ01010605    MBW59746.1    GGFK01012368    MBW45689.1    GGFK01012247    MBW45568.1    GGFJ01010670    MBW59811.1    ADMH02002078    ETN59493.1    GGFJ01010603    MBW59744.1    KQ971342    EFA04750.1    GFDL01009713    JAV25332.1    APCN01003737    AAAB01008984    EAA14742.3    NEVH01013250    PNF29362.1    DS232072    EDS33923.1    AXCN02002233    GAPW01005977    JAC07621.1    AAMC01000528    CH902658    EDV34917.2    CR855683    CAJ83488.1    GBXM01019579    JAH88998.1    AEMK02000070    DQIR01116143    HDA71619.1    CM004473    OCT82781.1    GEZM01037132    JAV82151.1    UFQT01002045    SSX32506.1    AJWK01017204    AGTP01014968    BEZZ01002941    GCC18395.1    GDAI01002476    JAI15127.1    LMAW01000377    KQL59260.1    AAQR03038574    AGTO01001091    AGTO01011210    AGTO01021330    GBHO01031529    GBRD01010968    GDHC01012924    JAG12075.1    JAG54856.1    JAQ05705.1    JH166641    GEBF01007353    EHA99731.1    JAN96279.1   

Proteomes

UP000283053    UP000007151    UP000218220    UP000053240    UP000037510    UP000005204    + More
UP000095301    UP000092553    UP000008792    UP000009192    UP000001070    UP000000803    UP000002282    UP000001292    UP000008711    UP000192221    UP000007801    UP000037069    UP000095300    UP000007798    UP000001819    UP000008744    UP000091820    UP000030765    UP000069940    UP000249989    UP000268350    UP000027135    UP000092460    UP000092444    UP000245037    UP000008820    UP000069272    UP000075883    UP000000673    UP000075900    UP000007266    UP000076408    UP000075903    UP000075840    UP000075902    UP000075882    UP000007062    UP000076407    UP000075885    UP000075901    UP000075881    UP000235965    UP000075880    UP000002320    UP000092443    UP000075886    UP000075920    UP000261540    UP000008143    UP000008227    UP000186698    UP000265300    UP000248484    UP000092461    UP000005215    UP000079721    UP000291020    UP000287033    UP000002281    UP000252040    UP000245320    UP000248483    UP000051836    UP000005225    UP000002280    UP000189705    UP000016665    UP000261681    UP000192224    UP000006813    UP000248480   

PRIDE

Q1HPY6    H9J1F1    A0JQ38    Q9VWI3   

Pfam

PF00253   Ribosomal_S14        + More
PF00755   Carn_acyltransf

Interpro

IPR001209   Ribosomal_S14        + More
IPR039551   Cho/carn_acyl_trans       
IPR042232   Cho/carn_acyl_trans_1       
IPR000542   Carn_acyl_trans       
IPR042231   Cho/carn_acyl_trans_2       
IPR029063   SAM-dependent_MTases       

SUPFAM

SSF53335   SSF53335       

Gene 3D

3.30.559.40     3.30.559.70    

ProteinModelPortal

Q1HPY6   A0A3S2L6Y2   A0A212EXX5   A0A2A4KB43   A0A194RIX5   A0A0L7KUT0   + More
A0A2H1VXC1   H9J1F1   A0A1I8MEB8   A0A0M3QZG6   B4MA46   B4L6X2   B4JX26   A0JQ38   Q9VWI3   B4PZI4   B4I750   B3NVN3   A0A1W4VST0   W8BVV5   B3MPT6   A0A0L0C403   B5M0Y1   A0A1I8P2T0   B4NPI7   B5DL77   B4GW64   A0A1A9WXX4   A0A084VBZ6   A0A0K8UUE0   A0A023EE59   A0A1L8EH77   A0A3B0KVU7   A0A067R2A8   A0A1B0BK15   A0A1B0G1J0   T1EA22   A0A2M3ZEW7   A0A2P8XSK7   Q17DU5   A0A182FG85   A0A182LUP5   A0A2M4C347   A0A2M4AY10   A0A2M4AYA9   A0A2M4C3R1   W5J7X8   A0A182R9S4   A0A2M4C371   D6WKQ4   A0A182YFH0   A0A182UR13   A0A1Q3FCV1   A0A2C9GRW0   A0A182UCX5   A0A182KUS5   Q7PW63   A0A182X2Y7   A0A182PDF6   A0A182SFX0   A0A182K3P8   A0A2J7QL97   A0A182J4I6   B0WSJ3   A0A1A9XRZ8   A0A1Y9H9K2   A0A023EFL4   A0A182WGW9   A0A3B3QP36   F6YV30   B3N1J1   Q28D63   A0A0E9WHN3   A0A0M3KL53   A0A1L8GG11   A0A1Y1M9A5   A0A340WWG8   A0A2Y9TIM0   A0A336MQH8   A0A1B0CLF4   A0A287D5W5   A0A1S3WTS4   A0A452IPJ9   A0A401RJS9   A0A0K8TLA2   F7C1X2   A0A341CKS4   A0A2U3V8J5   A0A2Y9LRA9   A0A0Q3X046   H0WWY2   F6SVT1   A0A1U7RP09   U3K160   A0A0A9X4R2   A0A383YRE3   A0A1W5A6I2   G5ARS1   A0A2Y9DEG4  

PDB

6GAZ     E-value=1.02532e-28,     Score=309

KEGG

100101170    K02954 small subunit ribosomal protein S14 | (RefSeq) mRpS14; mitochondrial 28S ribosomal protein S1

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0005763   GO:0032543   GO:0016746   GO:0005622   GO:0006260   GO:0008408   GO:0003677   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR19836   PTHR22589  

Length:

130

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02723

Exp number, first 60 AAs:

0.02703

Total prob of N-in:

0.11914

outside

1  -  130

 

 

Pi

227.726991

Theta

166.95103

Tajima's D

1.144967

CLR

0.282783

CSRT

0.701114944252787

Interpretation

Uncertain