Gene

KWMTBOMO09230  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003412

Annotation

ribosomal_protein_P1_[Bombyx_mori]

Location

Bomo_Chr15(+):13687978-13689179      View in EpiBrowser

Full name

60S acidic ribosomal protein P1      

Alternative Name

Acidic ribosomal protein RPA2
RP21C

Location in the cell

Cytoplasmic   Reliability : 1.925

CDS

ATGGTGTCAAAAGCTGAATTAGCATGTGTTTACTCTGCTCTCATCCTGGTTGATGATGATGTTGCCGTAACTGGTGAGAAAATTTCCACCATCTTGAAAGCGGCGGCTGTAGATGTAGAGCCATATTGGCCAGGTCTGTTCGCCAAAGCCTTGGAAGGCATCAATGTCCGTGACCTGATCACCAACATCGGCTCTGGAGTGGGTGCTGCTCCGGCCGCTGGTGGAGTGCCAGCCGCTGCTGCTGCAGCCGGCGCTCCGGCCGAGGAGAAGAAGGAAGAAAAGAAAGAGGAGGAACCCGAGGAGTCCGACGATGACATGGGCTTCGGTCTCTTTGACTAA

Protein

MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGGVPAAAAAAGAPAEEKKEEKKEEEPEESDDDMGFGLFD

Subunit

P1 and P2 exist as dimers at the large ribosomal subunit.

Similarity

Belongs to the eukaryotic ribosomal protein P1/P2 family.

Keywords

Complete proteome   Phosphoprotein   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  60S acidic ribosomal protein P1

Uniprot

Q5UAU0   G0ZEC3   H9J1M5   I4DLW8   I4DIK7   A0A1E1WDA7   + More
D1LYR7   A0A212EXT2   A0A3S2NGL3   E3UUV9   Q8WQJ1   A0A0L7KVA4   Q5MGJ5   A0A0A1XDQ4   E7DZ68   A0A194RK20   A0A2A4KAR6   Q6F454   B4LTL2   A0A0M3QTA0   B4KFI9   A2IAC4   W0C095   W0C3P6   W0C2P7   A0A1W4UQ67   M9PBK5   B4ICW8   B3N7Q2   B4Q638   P08570   K7IWC5   W8C3I2   A8CW94   A0A0K8U714   T1GDU0   Q29N41   B4G8A2   B0WU22   A0A1L8EIE2   O96938   A0A1Q3FB58   A0A1L8DS83   B4N0U4   A0A0P4VKR9   R4G8I3   A6YPP2   G3CJS4   A0A224Y1J2   A0A0V0G4T8   A0A069DVP3   U5EZ48   A0A158NU13   A0A194PLG0   R4UV70   A0A232FK66   A0A2P8XSK5   D1FPL7   A0A034VUK6   B4JDP3   Q1HRP7   A0A023EES4   Q6XIN9   V9IIV6   A0A088AHE1   A0A1B6C9L9   A0A411G5Y0   C4N193   B3MUH8   A0A1B6JCU6   A0A1B6G0G4   Q17BC2   A0A182QAP0   A0A0X7YHM7   A0A336KAW1   A0A1B6JAP6   A0A146L4M7   A0A1B6KCD2   A0A026WMK5   A0A182NTH5   A0A182JQL6   A0A182PCX7   A0A182U6L8   A0A182V6B4   A0A182L2Q8   A0A182X1D6   Q7PNA9   A0A182IEB6  

Pubmed

19121390    22651552    22118469    14668217    26263512    26227816    + More
16023793    25830018    26354079    17994087    17437641    24152112    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    3122177    8501137    12537569    18327897    20075255    24495485    18194529    15632085    9931511    27129103    18207082    21058630    26334808    21347285    28648823    29403074    20441151    25348373    17204158    17510324    24945155    26483478    14525923    17550304    19576987    26823975    24508170    20966253    12364791    14747013    17210077   

EMBL

AY769268    AAV34810.1    JF265001    AEL28832.1    BABH01023826    AK402286    + More
BAM18908.1    AK401125    BAM17747.1    GDQN01006086    JAT84968.1    GU084341    ACY95374.1    AGBW02011690    OWR46295.1    RSAL01000112    RVE47037.1    HM590399    ADP21468.1    AY072285    KT218665    ODYU01005012    AAL62466.1    ALA09385.1    SOQ45481.1    JTDY01005421    KOB67016.1    AY829791    AAV91405.1    GBXI01004763    JAD09529.1    HQ424771    ADT80715.1    KQ460106    KPJ17779.1    NWSH01000012    PCG80883.1    AB180436    BAD26680.1    CH940649    EDW64985.1    CP012523    ALC38519.1    CH933807    EDW13104.1    EF179438    ABM55444.1    KC623037    KC623038    KC623039    KC623040    KC623041    KC623042    KC623043    KC623044    KC623045    KC623046    KC623047    KC623048    KC623049    KC623050    KC623051    KC623052    AHE75829.1    AHE75830.1    AHE75831.1    AHE75832.1    AHE75833.1    AHE75834.1    AHE75835.1    AHE75836.1    AHE75837.1    AHE75838.1    AHE75839.1    AHE75840.1    AHE75841.1    AHE75842.1    AHE75843.1    AHE75844.1    KC623053    KC623054    KC623055    KC623056    KC623057    KC623058    KC623059    KC623060    KC623061    KC623062    KC623063    KC623064    KC623065    KC623066    KC623067    AHE75845.1    AHE75846.1    AHE75847.1    AHE75848.1    AHE75849.1    AHE75850.1    AHE75851.1    AHE75852.1    AHE75853.1    AHE75854.1    AHE75855.1    AHE75856.1    AHE75857.1    AHE75858.1    AHE75859.1    KC623068    OUUW01000004    AHE75860.1    SPP79702.1    AE014134    AGB92359.1    CH480829    EDW45394.1    CH954177    EDV57228.1    CM000361    CM002910    EDX03222.1    KMY87310.1    Y00504    S62170    AY069125    GAMC01000068    JAC06488.1    EU124600    ABV60318.1    GDHF01030169    JAI22145.1    CAQQ02029573    CH379060    EAL33502.1    CH479180    EDW28582.1    DS232099    EDS34738.1    GFDG01000361    JAV18438.1    Y11907    CAA72658.1    GFDL01010293    JAV24752.1    GFDF01004785    JAV09299.1    CH963920    EDW77707.1    GDKW01000904    JAI55691.1    ACPB03013963    GAHY01000922    JAA76588.1    EF639053    GEMB01000142    ABR27938.1    JAS02971.1    HP639841    AEM97978.1    GFTR01001933    JAW14493.1    GECL01003730    JAP02394.1    GBGD01003535    JAC85354.1    GANO01001439    JAB58432.1    ADTU01002832    KQ459602    KPI93569.1    KC632327    AGM32141.1    NNAY01000110    OXU30889.1    PYGN01001417    PSN34993.1    EZ419767    ACY69940.1    GAKP01013417    GAKP01013413    JAC45535.1    CH916368    EDW03413.1    DQ440047    CH477274    ABF18080.1    EAT45193.1    JXUM01001213    JXUM01030309    GAPW01006252    KQ560880    JAC07346.1    KXJ80503.1    AY231791    CM000157    AAR09814.1    EDW87138.1    JR048019    AEY60557.1    GEDC01027269    JAS10029.1    MH365495    QBB01304.1    EZ048866    ACN69158.1    CH902624    EDV33507.1    GECU01010694    JAS97012.1    GECZ01013853    JAS55916.1    CH477324    EAT43524.1    AXCN02000703    KC507366    AHB12489.1    UFQS01000177    UFQT01000177    UFQT01000278    SSX00798.1    SSX21178.1    SSX22681.1    GECU01011521    JAS96185.1    GDHC01015236    JAQ03393.1    GEBQ01030870    GEBQ01006011    JAT09107.1    JAT33966.1    KK107167    EZA56349.1    AAAB01008964    EAA12468.5    APCN01005200   

Proteomes

UP000005204    UP000007151    UP000283053    UP000037510    UP000053240    UP000218220    + More
UP000008792    UP000092553    UP000009192    UP000268350    UP000192221    UP000000803    UP000001292    UP000008711    UP000000304    UP000002358    UP000015102    UP000001819    UP000008744    UP000002320    UP000007798    UP000015103    UP000005205    UP000053268    UP000215335    UP000245037    UP000001070    UP000008820    UP000069940    UP000249989    UP000002282    UP000005203    UP000095300    UP000007801    UP000075886    UP000053097    UP000075884    UP000075881    UP000075885    UP000075902    UP000075903    UP000075882    UP000076407    UP000007062    UP000075840   

PRIDE

Q5UAU0    H9J1M5    M9PBK5    P08570   

Pfam

PF14631   FancD2

Interpro

IPR038716   P1/P2_N_sf        + More
IPR027534   Ribosomal_L12       
IPR001859   T.cruzi_P2-like       
IPR029448   FANCD2       

Gene 3D

1.10.10.1410    

ProteinModelPortal

Q5UAU0   G0ZEC3   H9J1M5   I4DLW8   I4DIK7   A0A1E1WDA7   + More
D1LYR7   A0A212EXT2   A0A3S2NGL3   E3UUV9   Q8WQJ1   A0A0L7KVA4   Q5MGJ5   A0A0A1XDQ4   E7DZ68   A0A194RK20   A0A2A4KAR6   Q6F454   B4LTL2   A0A0M3QTA0   B4KFI9   A2IAC4   W0C095   W0C3P6   W0C2P7   A0A1W4UQ67   M9PBK5   B4ICW8   B3N7Q2   B4Q638   P08570   K7IWC5   W8C3I2   A8CW94   A0A0K8U714   T1GDU0   Q29N41   B4G8A2   B0WU22   A0A1L8EIE2   O96938   A0A1Q3FB58   A0A1L8DS83   B4N0U4   A0A0P4VKR9   R4G8I3   A6YPP2   G3CJS4   A0A224Y1J2   A0A0V0G4T8   A0A069DVP3   U5EZ48   A0A158NU13   A0A194PLG0   R4UV70   A0A232FK66   A0A2P8XSK5   D1FPL7   A0A034VUK6   B4JDP3   Q1HRP7   A0A023EES4   Q6XIN9   V9IIV6   A0A088AHE1   A0A1B6C9L9   A0A411G5Y0   C4N193   B3MUH8   A0A1B6JCU6   A0A1B6G0G4   Q17BC2   A0A182QAP0   A0A0X7YHM7   A0A336KAW1   A0A1B6JAP6   A0A146L4M7   A0A1B6KCD2   A0A026WMK5   A0A182NTH5   A0A182JQL6   A0A182PCX7   A0A182U6L8   A0A182V6B4   A0A182L2Q8   A0A182X1D6   Q7PNA9   A0A182IEB6  

PDB

2LBF     E-value=3.91304e-17,     Score=209

KEGG

778451    K02942 large subunit ribosomal protein LP1 | (RefSeq) RpP1; ribosomal protein P1

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006414   GO:0022626   GO:0022625   GO:0002181   GO:0006281   GO:0030295   GO:0043021   GO:0005622   GO:0006260   GO:0008408   GO:0003677   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR32086  

Length:

112

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.77293

Exp number, first 60 AAs:

0.0919

Total prob of N-in:

0.26783

outside

1  -  112

 

 

Pi

237.035614

Theta

193.570906

Tajima's D

0.706689

CLR

1.567085

CSRT

0.576671166441678

Interpretation

Uncertain