Gene

KWMTBOMO09229

Annotation

PREDICTED:_small_G_protein_signaling_modulator_3_homolog_[Amyelois_transitella]

Location

Bomo_Chr15(+):13683048-13685523      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.653

CDS

ATGGATCTTGCCAAATCGTTATTCAGTTCAAGAGATCATGTTGGGTATGTCGGTCGTGAAGACCACGAACGTAAGATTAGTGCAGCGCTGAACGATGATGACCCTGAAGACGTGATCGACGCGATTAGAGGACTAAACATAGCTGATGAACTTCTTCCTGCGCCAGGAGGGCCATTTTCTGCTCTAACGCCTAGTATGGTGCCCCAAGACATAATGGCTAAACTAGCACAACCAGAATCCGAAGGACACGGAGGTGGACTACCAGACTACAGTTTCGACGAGTTTGGCTTTTGTATTGAAGAAGAAGATGGTCCGGAACAAAGCTCAAACAAATTATTAGCTAATGCATTTGTTGAAGATGATCAACATAGACTGCAATGGGAGTTTTACAGCAAAGAAATTAATTTTACCGAAGGCAGTGGTAAGCTTGAAAAATCAGATAAACTACAGAAAATGGTCAAAGATGGTGTACCACATTCACTTAGGCCTCAAGTCTGGATGCATTTATGTGGAGCTAACAAGAAACGAGCATCAACTGAAATAACATATCATGAAATTGTAAGGGCATCAAGTGATGATGGTTTGGTAACTAGCAAACAAATAGAAAAAGATTTAGTCCAAATTCTGCCTAATAATGTTTGTTTCTCACATCCAACTAGCACTGGTGTACCTCGGCTTAGACGCATCCTCAGAGCCTTAGCATGGCTCTATCCAGACATTGGATACTGTCAAGGGACAGGAATGATTGCAGCATCACTATTACTATTAATGGAAGAAGAAGAAGCATTCTGGATAATGTGTACAACAGTGGAAGATCTTTTACCAGCTTCTTATTATTCATCAACACTGATTGGAATCCAAGCAGATCAAAAAGTTTTAAGGAGTCTTATATCAAACTATTTACCAGGCATCGACCAGGTCCTTAATGCTCATGACATTGAACTATCTCTTATCACAATGCATTGGTTTCTAACTTTGTATGCTAATGTAGTCCATATGAAAATTTTATTAAGAATATGGGATTTATTTTTCTTTGATGGCTCTATTGTCTTATTTAAAGTAACATTAGCGATGTTGAAAATAAAAGAGAATAGATTCACAGAAATCTCCAACTCCGCCCAAATCTTCAATGCTCTCTCTGATATACCTGGGGAAATTGATGATGTTGAACTTCTAATAAAAACCATTGATGAGGTATGTGGTGATACTCTAAGTCCTGCATTAATAGAAACACACAGAAGAAGACACTTGGCGTACTTAATGGCAGATCAAGGTGCTCTTGTTGGAAATCCAAATGTTGTACCAAACTTGCCTAAGCAGCAATTGCAGAGGCGTCAAATAAAAAAGAGCAAGTCTGTAATACAAACTATTTTGTTTGGGGAAGATGGTAGTAATGAAGATGCTATTTCTAAGAATGTGAAGCAAACTGAAATACTAGTGGACTTGAGAGAAGCAATACTACAGGTTGCAAGGCACTTCCTAGCTTTAGAACCACAACTGACTTCAGAAGTTCAAATGACAGCTGATTACACCATGCAGAGTCATGCTGCTGATAGGGAAAGATACGTTAATGTTTCCAGAAGCAAGAGGCGAAGGGCAAAAGCTCTATTAGACTTTGAGAGAAGAGATGGTGATGAATTAGGATTCAGAAAAAATGATGTTATTGAAGTTATAAGTTCAAGAGATGAACACTGTTGGATTGGAGAACTAAACGGGTTGAGGGGCTGGTTTCCTGCTAGATTTGTCAAATTGCTCGATGAAAAGGGTGTAAAATATAGCAAGGCTGGTGATGATTCTGTCACGGAAAAAGCTGCACACTTAGTGAGAGGTGTATTAGCTCCAGCATTTAAAAGAGTTCTCTTGCACGGTATAAAGAGGCCAAGCTTTCTAGATGGACCATGTCATCCGTGGCTATTCATTGAAGAAGCCTCTTCTCGCGAAGTTGAAAAAGATTTTAATTCAGTTTACAGCCGCTTGGTTCTCTGTAAAACATATAGATTAGATGAAGATGGGAAGGTGTTGACTCCTGAAGAGTTATTATACAGATGTGTCCAAGCAATAAATTTATCACATGACAATGCTCATGCTCAGATGGATGTGAAATTGCGCACATTAATATGTATGGGCTTAAATGAAGAAGCACTACATCTGTGGCTTGAAGTGTTGTGTTCTTGTGTTGATGTCGTTCAAAAATGGTATCATCCATGGTCATTTATAAATTCCCCTGGATGGGTACAGATCAAATGTGAATTACGTATACTTTCTCAGTTTGGTTTCAATTTGAACCCCGATTGGGAGCTTCCATTGAAAAAAGATACACAAAATCAGCCACTGAAGGAAGGTGTAAGAGATATGCTTGTTAAACACCATTTATTCTCATGGGACTTGTGA

Protein

MDLAKSLFSSRDHVGYVGREDHERKISAALNDDDPEDVIDAIRGLNIADELLPAPGGPFSALTPSMVPQDIMAKLAQPESEGHGGGLPDYSFDEFGFCIEEEDGPEQSSNKLLANAFVEDDQHRLQWEFYSKEINFTEGSGKLEKSDKLQKMVKDGVPHSLRPQVWMHLCGANKKRASTEITYHEIVRASSDDGLVTSKQIEKDLVQILPNNVCFSHPTSTGVPRLRRILRALAWLYPDIGYCQGTGMIAASLLLLMEEEEAFWIMCTTVEDLLPASYYSSTLIGIQADQKVLRSLISNYLPGIDQVLNAHDIELSLITMHWFLTLYANVVHMKILLRIWDLFFFDGSIVLFKVTLAMLKIKENRFTEISNSAQIFNALSDIPGEIDDVELLIKTIDEVCGDTLSPALIETHRRRHLAYLMADQGALVGNPNVVPNLPKQQLQRRQIKKSKSVIQTILFGEDGSNEDAISKNVKQTEILVDLREAILQVARHFLALEPQLTSEVQMTADYTMQSHAADRERYVNVSRSKRRRAKALLDFERRDGDELGFRKNDVIEVISSRDEHCWIGELNGLRGWFPARFVKLLDEKGVKYSKAGDDSVTEKAAHLVRGVLAPAFKRVLLHGIKRPSFLDGPCHPWLFIEEASSREVEKDFNSVYSRLVLCKTYRLDEDGKVLTPEELLYRCVQAINLSHDNAHAQMDVKLRTLICMGLNEEALHLWLEVLCSCVDVVQKWYHPWSFINSPGWVQIKCELRILSQFGFNLNPDWELPLKKDTQNQPLKEGVRDMLVKHHLFSWDL

Uniprot

A0A2H1VYA1   A0A2A4K9C8   A0A1E1WS27   A0A212EXS9   A0A0L7K4G6   A0A194RKB8   + More
A0A194PJH2   A0A151I9N6   A0A195DKL1   F4WQG0   A0A1Y1K076   A0A195F775   A0A2A3EM99   A0A158NNI4   A0A087ZZH9   A0A0N0U6A0   A0A151WWS4   A0A1B0GJX0   E2BSQ7   D6W7G3   A0A0L7QNB1   A0A154P6V1   K7IN72   A0A1L8DVY6   A0A232EV58   Q17FM5   A0A0L0C869   A0A182G3G4   A0A182KH75   A0A067RC13   T1PHB3   A0A2J7PLR1   A0A1I8M973   A0A182LQW0   Q7PYV2   A0A182UP80   A0A224XIU0   E2AUU8   A0A1W4X420   A0A182FRA2   W5JDV0   A0A069DX50   A0A195B3I6   A0A182TVG4   A0A182NZ96   A0A182W014   A0A0C9R602   A0A182MJT8   A0A182R0S2   A0A1I8Q8D8   A0A1A9ZR04   B0WTA5   A0A1A9UF38   A0A182J5J6   A0A0J7KUH0   A0A1A9WPE1   A0A1B0FJF4   A0A1A9YRN8   N6U6M8   A0A182PND3   A0A1B0B4A0   A0A182HZU2   A0A182XGI4   B4KAG5   B3MXA1   B3P0R8   A0A1W4VN90   B4QZ41   B4PS79   B4HE08   Q9VFB6   B4GMM2   Q294T8   E0V8Z8   B4JGB2   A0A182Y458   B4LY26   A0A1W4WT53   A0A3B0K6J4   W8BMW7   A0A084W3H3   A0A0K8UJT7   A0A034VDE6   A0A0R3NJJ4   A0A0K8WI48   B4NBB4   A0A0A1X830   A0A0M4EW80   A0A182RNW4   A0A3R7PS56   A0A1B6KJ19   A0A2R5LBM2   A0A210Q0E7   A0A433T805   A0A0B7ACK4   T1J9C7   K1Q6P1   A0A0B7AA75   A0A1S3HG43   L7M9L0  

Pubmed

22118469    26227816    26354079    21719571    28004739    21347285    + More
20798317    18362917    19820115    20075255    28648823    17510324    26108605    26483478    24845553    25315136    20966253    12364791    14747013    17210077    20920257    23761445    26334808    23537049    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    23185243    20566863    25244985    24495485    24438588    25348373    25830018    28812685    22992520    25576852   

EMBL

ODYU01005012    SOQ45482.1    NWSH01000012    PCG80885.1    GDQN01001443    JAT89611.1    + More
AGBW02011690    OWR46296.1    JTDY01011872    KOB52372.1    KQ460106    KPJ17780.1    KQ459602    KPI93571.1    KQ978273    KYM95786.1    KQ980765    KYN13418.1    GL888273    EGI63560.1    GEZM01098364    GEZM01098363    JAV53911.1    KQ981744    KYN36236.1    KZ288212    PBC32810.1    ADTU01021606    KQ435732    KOX77328.1    KQ982691    KYQ52266.1    AJWK01022430    GL450241    EFN81303.1    KQ971307    EFA11199.1    KQ414855    KOC60115.1    KQ434816    KZC06860.1    GFDF01003511    JAV10573.1    NNAY01002052    OXU22236.1    CH477270    EAT45318.1    JRES01000776    KNC28427.1    JXUM01141446    KQ569247    KXJ68704.1    KK852605    KDR20408.1    KA648161    AFP62790.1    NEVH01024424    PNF17267.1    AAAB01008987    EAA00950.3    GFTR01008066    JAW08360.1    GL442888    EFN62823.1    ADMH02001839    ETN60964.1    GBGD01000508    JAC88381.1    KQ976641    KYM78759.1    GBYB01008217    JAG77984.1    AXCM01001384    AXCN02000272    DS232083    EDS34333.1    LBMM01003103    KMQ93968.1    CCAG010018530    APGK01047197    APGK01047198    KB741077    ENN74217.1    JXJN01008224    APCN01002011    CH933806    EDW15678.1    CH902629    EDV35324.1    CH954181    EDV48966.1    CM000364    EDX12869.1    CM000160    EDW97499.1    CH480815    EDW42100.1    AE014297    AY058625    AAF55144.1    AAL13854.1    CH479185    EDW38096.1    CM000070    CH673789    EAL28876.1    EDY71553.1    DS234988    EEB09854.1    CH916369    EDV92581.1    CH940650    EDW66892.1    OUUW01000008    SPP83690.1    GAMC01006423    JAC00133.1    ATLV01020011    KE525292    KFB44767.1    GDHF01025508    JAI26806.1    GAKP01017631    JAC41321.1    KRT01146.1    KRT05560.1    GDHF01001491    JAI50823.1    CH964232    EDW81078.1    GBXI01007221    JAD07071.1    CP012526    ALC47742.1    QCYY01001796    ROT75270.1    GEBQ01028534    JAT11443.1    GGLE01002742    MBY06868.1    NEDP02005310    OWF42207.1    RQTK01000559    RUS77706.1    HACG01030830    CEK77695.1    JH431971    JH818393    EKC32427.1    HACG01030828    CEK77693.1    GACK01005196    JAA59838.1   

Proteomes

UP000218220    UP000007151    UP000037510    UP000053240    UP000053268    UP000078542    + More
UP000078492    UP000007755    UP000078541    UP000242457    UP000005205    UP000005203    UP000053105    UP000075809    UP000092461    UP000008237    UP000007266    UP000053825    UP000076502    UP000002358    UP000215335    UP000008820    UP000037069    UP000069940    UP000249989    UP000075881    UP000027135    UP000235965    UP000095301    UP000075882    UP000007062    UP000075903    UP000000311    UP000192223    UP000069272    UP000000673    UP000078540    UP000075902    UP000075884    UP000075920    UP000075883    UP000075886    UP000095300    UP000092445    UP000002320    UP000078200    UP000075880    UP000036403    UP000091820    UP000092444    UP000092443    UP000019118    UP000075885    UP000092460    UP000075840    UP000076407    UP000009192    UP000007801    UP000008711    UP000192221    UP000000304    UP000002282    UP000001292    UP000000803    UP000008744    UP000001819    UP000009046    UP000001070    UP000076408    UP000008792    UP000268350    UP000030765    UP000007798    UP000092553    UP000075900    UP000283509    UP000242188    UP000271974    UP000005408    UP000085678   

PRIDE

Q9VFB6   

Pfam

PF00018   SH3_1        + More
PF02759   RUN
PF00566   RabGAP-TBC
PF00575   S1
PF03876   SHS2_Rpb7-N

Interpro

IPR037213   Run_dom_sf        + More
IPR035969   Rab-GTPase_TBC_sf       
IPR036028   SH3-like_dom_sf       
IPR004012   Run_dom       
IPR001452   SH3_domain       
IPR000195   Rab-GTPase-TBC_dom       
IPR035833   SGSM3_SH3       
IPR036898   RNA_pol_Rpb7-like_N_sf       
IPR005576   Rpb7-like_N       
IPR012340   NA-bd_OB-fold       
IPR003029   S1_domain       
IPR018247   EF_Hand_1_Ca_BS       

SUPFAM

SSF50044   SSF50044        + More
SSF140741   SSF140741       
SSF47923   SSF47923       
SSF50249   SSF50249       
SSF88798   SSF88798       

Gene 3D

3.30.1490.120    

CDD

cd11813  SH3_SGSM3

ProteinModelPortal

A0A2H1VYA1   A0A2A4K9C8   A0A1E1WS27   A0A212EXS9   A0A0L7K4G6   A0A194RKB8   + More
A0A194PJH2   A0A151I9N6   A0A195DKL1   F4WQG0   A0A1Y1K076   A0A195F775   A0A2A3EM99   A0A158NNI4   A0A087ZZH9   A0A0N0U6A0   A0A151WWS4   A0A1B0GJX0   E2BSQ7   D6W7G3   A0A0L7QNB1   A0A154P6V1   K7IN72   A0A1L8DVY6   A0A232EV58   Q17FM5   A0A0L0C869   A0A182G3G4   A0A182KH75   A0A067RC13   T1PHB3   A0A2J7PLR1   A0A1I8M973   A0A182LQW0   Q7PYV2   A0A182UP80   A0A224XIU0   E2AUU8   A0A1W4X420   A0A182FRA2   W5JDV0   A0A069DX50   A0A195B3I6   A0A182TVG4   A0A182NZ96   A0A182W014   A0A0C9R602   A0A182MJT8   A0A182R0S2   A0A1I8Q8D8   A0A1A9ZR04   B0WTA5   A0A1A9UF38   A0A182J5J6   A0A0J7KUH0   A0A1A9WPE1   A0A1B0FJF4   A0A1A9YRN8   N6U6M8   A0A182PND3   A0A1B0B4A0   A0A182HZU2   A0A182XGI4   B4KAG5   B3MXA1   B3P0R8   A0A1W4VN90   B4QZ41   B4PS79   B4HE08   Q9VFB6   B4GMM2   Q294T8   E0V8Z8   B4JGB2   A0A182Y458   B4LY26   A0A1W4WT53   A0A3B0K6J4   W8BMW7   A0A084W3H3   A0A0K8UJT7   A0A034VDE6   A0A0R3NJJ4   A0A0K8WI48   B4NBB4   A0A0A1X830   A0A0M4EW80   A0A182RNW4   A0A3R7PS56   A0A1B6KJ19   A0A2R5LBM2   A0A210Q0E7   A0A433T805   A0A0B7ACK4   T1J9C7   K1Q6P1   A0A0B7AA75   A0A1S3HG43   L7M9L0  

PDB

4P17     E-value=3.30556e-27,     Score=306

KEGG

NA   

GO

GO:0016021   GO:0005096   GO:0005623   GO:0090630   GO:0006886   GO:0017137   GO:0003899   GO:0003676   GO:0006351   GO:0005829   GO:0043547   GO:0005515   GO:0016020   GO:0006355   GO:0046983   GO:0006260   GO:0008408   GO:0003677   GO:0016876   GO:0043039  

Length:

796

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.54366999999999

Exp number, first 60 AAs:

0.00011

Total prob of N-in:

0.01428

outside

1  -  796

 

 

Pi

349.541039

Theta

208.315665

Tajima's D

2.172182

CLR

13.79688

CSRT

0.906454677266137

Interpretation

Uncertain