SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO09227
Annotation
PREDICTED:_thiamine_transporter_1-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 4.912
 

Sequence

CDS
ATGTACATGGCCACTGAAGTTGCTTATTACACTTACATTTATGCTAAGGTGGATCCGAAGAAGTACCCTTTAGTTACGTCGTGTACTAGGATCGCATCATTGACAGGAAGGTTCCTATCTGGTGTCAGTTCACAACTACTCATACATTTCAAATTCATGGACTACAGGGAACTAAATTACATAACTTTGACAGCGCAGATACTAGCAACATTTTGGGCACTATGGCTGCCTCCGGTTAAATATGGAATATACTTTCACAGAAGGATATCGACAATTAATATCCCTGTTGACAAATCATCATATAAAAACTCAGAAAAGCGTACATTCACAAGTAATTTAATAGAGGCTTCGAGCTTAATATTGAAACACTCGAGGGCGGCTTACTCCCGTCCAAAAGTGATAGCGTGGAGCGCTCTGTATGCGGTCGCTTTAGCCCTCTTCGTGCAAGCTCAGACTTATATACAAATACTGTGGCGGTACATACAAAAAGAACAATCGAATCCGGTATTATACAATGGAGCTGCGGAAGCCGCTACCACTCTGTTAGGGGCCGGGGCTGCGTACATAGCATCGTATGACCGGCAGTCCTTCAGTCCCGCACTTTCTTCAGCCATACAAGGAATCGCTCTGTTTCTAACTACCTACATATCGAACGTATTCGTTTCCTACGCTGGATACGTTGTCATGGGAGTCATGTTTCATTACATCATCACTTTGGCCAGCGCAAAAATAGCTAGTCAATTAATCGACGACAGTTGTTTCGGGCTGATATTCGGTATCAACACACTCCTCGGCGTCGCTTTGCAGTCTCTCCTCACGTACATACTGTTACAAAACTTGGAGTTTCACATAACAACGCACTATTACATCGTAAGCGGTCTTTTTATAACTCTGGCCACTTGTTGGTTAGTCGGATGGATACTCCATATTGCTCATAATAAAAAACAAAACGTGAACAGTAATTAA
Protein
MYMATEVAYYTYIYAKVDPKKYPLVTSCTRIASLTGRFLSGVSSQLLIHFKFMDYRELNYITLTAQILATFWALWLPPVKYGIYFHRRISTINIPVDKSSYKNSEKRTFTSNLIEASSLILKHSRAAYSRPKVIAWSALYAVALALFVQAQTYIQILWRYIQKEQSNPVLYNGAAEAATTLLGAGAAYIASYDRQSFSPALSSAIQGIALFLTTYISNVFVSYAGYVVMGVMFHYIITLASAKIASQLIDDSCFGLIFGINTLLGVALQSLLTYILLQNLEFHITTHYYIVSGLFITLATCWLVGWILHIAHNKKQNVNSN

Summary

Similarity
Belongs to the serpin family.
EMBL
NWSH01000012    PCG80875.1    RSAL01000112    RVE47042.1    KQ460106    KPJ17773.1    + More
AGBW02011690    OWR46289.1    GDQN01004076    JAT86978.1    KQ459602    KPI93565.1    CCAG010011488    ATLV01013503    KE524866    KFB38065.1    CH964272    EDW84164.1    JXJN01014183    JRES01000819    KNC28156.1    CH902617    EDV44139.1    GAPW01001465    JAC12133.1    OUUW01000007    SPP83509.1    JXUM01040706    KQ561256    KXJ79202.1    GFDG01003845    JAV14954.1    CM000364    EDX13436.1    GFDF01009504    JAV04580.1    GFDG01003846    JAV14953.1    CH479185    EDW38350.1    GFDG01003847    JAV14952.1    CM000070    EAL29060.1    KRT01265.1    AE014297    BT024295    AAF54568.1    ABC86357.1    EDV44137.2    CH480815    EDW42682.1    GFDG01001253    JAV17546.1    CP012526    ALC47379.1    GFDG01001252    JAV17547.1    GDHF01031736    JAI20578.1    GBXI01008316    GBXI01001397    JAD05976.1    JAD12895.1    CH916369    EDV92610.1    GFDG01001257    JAV17542.1    CH933806    EDW15150.1    EDV92609.1    DS231976    EDS30069.1    CH477621    EJY57841.1    CH954181    EDV49586.1    CVRI01000048    CRK99036.1    GAKP01014610    GAKP01014609    JAC44342.1    CM000160    EDW96854.1    CH940650    EDW67206.1    BT022488    AAF54567.2    AAY54904.1    EDW42683.1    EDW67205.1    GFDL01008191    JAV26854.1    EDW96853.1    KQ971346    EFA04966.1    KQ980765    KYN13471.1    GAMC01004459    JAC02097.1    AXCN02000270    EDV44138.1    KQ982383    KYQ56931.1    EDX13437.1    DS231889    EDS43661.1    EDW15151.1    EDV49587.1    UFQT01000411    SSX24066.1    EDW38349.1    CCAG010022298    EAL29059.2    KQ977141    KYN05417.1    AAAB01008960    EAA10851.4    EDW84163.2    KK107238    EZA54803.1    ALC47378.1    AXCN02000423    UFQT01000805    SSX27349.1    GDHF01023308    JAI29006.1    JXUM01137309    KQ568559    KXJ68959.1    GL436277    EFN72132.1    KQ971342    EFA03674.1    KQ981692    KYN37889.1    CH902620    EDV32100.1    GEZM01083921    JAV60944.1    KB632391    ERL94559.1    GL766755    EFZ14695.1    JXJN01014748    JXJN01025742    UFQT01000197    SSX21554.1    APGK01034125    KB740904    ENN78451.1    GL767077    EFZ14230.1    KB632006    ERL87963.1    QOIP01000007    RLU20489.1    AJVK01017384    CRK98614.1   
Pfam
PF01770   Folate_carrier        + More
PF12763   EF-hand_4
PF14604   SH3_9
PF00018   SH3_1
PF02366   PMT
PF02815   MIR
PF16192   PMT_4TMC
PF00079   Serpin
Interpro
IPR036259   MFS_trans_sf        + More
IPR002666   Folate_carrier       
IPR020846   MFS_dom       
IPR036028   SH3-like_dom_sf       
IPR002048   EF_hand_dom       
IPR011992   EF-hand-dom_pair       
IPR018247   EF_Hand_1_Ca_BS       
IPR000261   EH_dom       
IPR001452   SH3_domain       
IPR027005   GlyclTrfase_39-like       
IPR003342   Glyco_trans_39/83       
IPR036300   MIR_dom_sf       
IPR016093   MIR_motif       
IPR032421   PMT_4TMC       
IPR036186   Serpin_sf       
IPR023796   Serpin_dom       
IPR042178   Serpin_sf_1       
IPR023795   Serpin_CS       
IPR042185   Serpin_sf_2       
SUPFAM
SSF103473   SSF103473        + More
SSF50044   SSF50044       
SSF47473   SSF47473       
SSF82109   SSF82109       
SSF56574   SSF56574       
Gene 3D

Ontologies

Topology

Length:
321
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
137.88482
Exp number, first 60 AAs:
3.21162
Total prob of N-in:
0.85284
inside
1  -  57
TMhelix
58  -  76
outside
77  -  133
TMhelix
134  -  156
inside
157  -  168
TMhelix
169  -  191
outside
192  -  218
TMhelix
219  -  241
inside
242  -  253
TMhelix
254  -  276
outside
277  -  285
TMhelix
286  -  308
inside
309  -  321
 
 

Population Genetic Test Statistics

Pi
252.573906
Theta
146.167759
Tajima's D
2.076348
CLR
17.505496
CSRT
0.890355482225889
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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