Gene

KWMTBOMO09214

Annotation

PREDICTED:_uncharacterized_protein_LOC101742379_[Bombyx_mori]

Location

Bomo_Chr15(-):13373575-13383237      View in EpiBrowser

Full name

DNA polymerase      

Location in the cell

Cytoplasmic   Reliability : 1.94

CDS

ATGTCATCGCCAGATTTCGATCTATGTATGAAAAGAGCATTCAACAAGCTTCGACCGTATTTCAAAACAGGTGTACCGGAAATGGGCGTCGCACCATTTGACCCTCACTTCGCAAAGGAAGTGAAGCAATCTCGAGCGATCCGTGGTGTCGGGTACACGCTCACACTGAATGATGTGTTCGAGAGGGGCTGGACACAGTCGACAGTCACCAAATACAAAACGGACTGGGAGAATCAGCGGATCATCTACTCCCAATATTTCCCAGAGAAATGGCTCAATGGCGATTACGAATTCAAGGGAGACGCATTCGGACTGGGCGTAATACGGTCCGGACGTTGGAACCTGACGCTGCGCGACTACTCACAAACGACGCGTATCAAAAGAAACGGCACTGGACTCGATGTTCATGTCGAAGTCGATCATATTGGCGACATGGAGATACATGTCGGGAACCTACTCAGAGGAAATGGGATACTCGAACGTATGTTGGACCGTCTAATCAACGTTACCTGGAAGCCGGGCTTCGCGGTAATCAGACCGCTCATCAACGACCTGGTCAGCACAGCTTTCACGGACATCTGGAGCACGTCCTTTAAGAATTTTCCTCTCGAGAACTTCATTAAACCATGA

Protein

MSSPDFDLCMKRAFNKLRPYFKTGVPEMGVAPFDPHFAKEVKQSRAIRGVGYTLTLNDVFERGWTQSTVTKYKTDWENQRIIYSQYFPEKWLNGDYEFKGDAFGLGVIRSGRWNLTLRDYSQTTRIKRNGTGLDVHVEVDHIGDMEIHVGNLLRGNGILERMLDRLINVTWKPGFAVIRPLINDLVSTAFTDIWSTSFKNFPLENFIKP

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

[4Fe-4S] cluster

Similarity

Belongs to the DNA polymerase type-B family.

Uniprot

A0A2H1VYT4   A0A2A4K9D5   A0A437B8M7   A0A1E1W3G2   I4DMD4   A0A212ENR5   + More
A0A194PJQ5   I4DJH5   H9J1F9   A0A194RP14   A0A0K8TUQ1   A0A1B0D1Z4   Q16JH9   A0A1S4FZ64   A0A182GJ12   B0WJX2   T1PJ85   A0A1I8MF81   A0A1I8PAE8   K7IUQ1   B4N8K2   A0A232FHJ6   A0A182F6T3   W5JKZ1   A0A1B6EBN2   A0A154PPS2   E2AH13   E2BGV6   B3M0S7   A0A0P9APF8   A0A182QMS4   A0A1W4VLL3   A0A182NS82   A0A182SMN6   B4R0E0   A0A3B0KDZ4   Q9VD91   B4I3E3   A0A026VUE4   B4JUI5   A0A182JZ33   A0A182J7E8   A0A034V6W9   W8BWQ6   A0A182PKI2   A0A2S2QF59   B4IV28   H6WAR6   A0A182VYY8   A0A182LSQ4   B4KDF3   A0A0C9RI99   B3NYV7   A0A182RPV3   A0A0M8ZXR2   A0A151IJ61   A0A182UNW1   A0A182UD79   A0A182XBD9   A0A182KLU8   Q7PYK8   A0A182I081   A0A0L0C940   B4GDR6   Q295K2   A0A0A1WCE9   A0A3B0JNT9   A0A0M4ENJ7   A0A084VHJ0   B4M576   A0A151WXI6   B4PQW8   F4WUM8   A0A3L8DMQ5   A0A1B0A0F2   A0A158NBA3   A0A2S2PF18   A0A1B0BBM5   A0A1A9W2B8   C4WSR9   A0A1W4WKV5   A0A1B6FSB4   A0A2J7QTL0   A0A336KFN9   E9J958   A0A139WGY8   B4GDR5   A0A067R741   A0A1B0GF46   E0VZK4   B5DYW7   X1X3I2   A0A1B0CVW4   A0A2P8Z1N9   A0A1W4WAR0   T1HEQ9  

EC Number

2.7.7.7

Pubmed

22651552    22118469    26354079    19121390    26017144    17510324    + More
26483478    25315136    20075255    17994087    28648823    20920257    23761445    20798317    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24508170    25348373    24495485    17550304    23055932    25244985    20966253    12364791    14747013    17210077    26108605    15632085    23185243    25830018    24438588    21719571    30249741    21347285    21282665    18362917    19820115    24845553    20566863    29403074   

EMBL

ODYU01004984    SOQ45404.1    NWSH01000012    PCG80895.1    RSAL01000116    RVE46850.1    + More
GDQN01009541    GDQN01008470    JAT81513.1    JAT82584.1    AK402452    BAM19074.1    AGBW02013624    OWR43116.1    KQ459602    KPI93552.1    AK401443    BAM18065.1    BABH01023789    BABH01023790    KQ460106    KPJ17761.1    GCVX01000239    JAI17991.1    AJVK01022480    CH478008    EAT34433.1    JXUM01067209    KQ562438    KXJ75914.1    DS231965    EDS29502.1    KA648754    AFP63383.1    AAZX01011544    CH964232    EDW81453.1    NNAY01000182    OXU30236.1    ADMH02001255    ETN63419.1    GEDC01002014    JAS35284.1    KQ435007    KZC13434.1    GL439444    EFN67285.1    GL448228    EFN85088.1    CH902617    EDV42092.1    KPU79563.1    AXCN02000202    CM000364    EDX12065.1    OUUW01000008    SPP83896.1    AE014297    AAF55907.1    CH480821    EDW55307.1    KK107899    EZA47285.1    CH916374    EDV91155.1    GAKP01020713    JAC38239.1    GAMC01008869    GAMC01008867    JAB97686.1    GGMS01006639    MBY75842.1    CH892597    EDX00242.1    JQ042685    AEZ67834.1    AXCM01002214    CH933806    EDW15962.1    GBYB01012937    JAG82704.1    CH954181    EDV48220.1    KQ435830    KOX71719.1    KQ977412    KYN02898.1    AAAB01008987    EAA01138.3    APCN01002054    JRES01000752    KNC28762.1    CH479182    EDW34577.1    CM000070    EAL28709.2    KRT00981.1    KRT00982.1    GBXI01017653    JAC96638.1    SPP83897.1    CP012526    ALC47202.1    ATLV01013177    KE524842    KFB37434.1    CH940652    EDW59787.1    KQ982665    KYQ52590.1    CM000160    EDW96292.2    GL888374    EGI62091.1    QOIP01000006    RLU21556.1    ADTU01010695    ADTU01010696    ADTU01010697    GGMR01015418    MBY28037.1    JXJN01011551    AK340309    BAH70939.1    GECZ01016667    JAS53102.1    NEVH01011194    PNF31915.1    UFQS01000375    UFQT01000375    SSX03327.1    SSX23693.1    GL769168    EFZ10699.1    KQ971343    KYB27144.1    EDW34576.1    KK852901    KDR14116.1    CCAG010012761    DS235853    EEB18810.1    EDY68408.1    KRT00979.1    KRT00980.1    ABLF02027828    AJWK01031344    AJWK01031345    AJWK01031346    AJWK01031347    PYGN01000239    PSN50417.1    ACPB03005483   

Proteomes

UP000218220    UP000283053    UP000007151    UP000053268    UP000005204    UP000053240    + More
UP000092462    UP000008820    UP000069940    UP000249989    UP000002320    UP000095301    UP000095300    UP000002358    UP000007798    UP000215335    UP000069272    UP000000673    UP000076502    UP000000311    UP000008237    UP000007801    UP000075886    UP000192221    UP000075884    UP000075901    UP000000304    UP000268350    UP000000803    UP000001292    UP000053097    UP000001070    UP000075881    UP000075880    UP000075885    UP000002282    UP000076408    UP000075920    UP000075883    UP000009192    UP000008711    UP000075900    UP000053105    UP000078542    UP000075903    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000037069    UP000008744    UP000001819    UP000092553    UP000030765    UP000008792    UP000075809    UP000007755    UP000279307    UP000092445    UP000005205    UP000092460    UP000091820    UP000192223    UP000235965    UP000007266    UP000027135    UP000092444    UP000009046    UP000007819    UP000092461    UP000245037    UP000015103   

PRIDE

H9J1F9    Q9VD91   

Pfam

PF06585   JHBP        + More
PF08996   zf-DNA_Pol
PF00136   DNA_pol_B
PF03104   DNA_pol_B_exo1
PF12254   DNA_pol_alpha_N
PF16087   DUF4817

Interpro

IPR038606   To_sf        + More
IPR010562   Haemolymph_juvenile_hormone-bd       
IPR036397   RNaseH_sf       
IPR017964   DNA-dir_DNA_pol_B_CS       
IPR006172   DNA-dir_DNA_pol_B       
IPR006134   DNA-dir_DNA_pol_B_multi_dom       
IPR006133   DNA-dir_DNA_pol_B_exonuc       
IPR024647   DNA_pol_a_cat_su_N       
IPR015088   Znf_DNA-dir_DNA_pol_B_alpha       
IPR012337   RNaseH-like_sf       
IPR038256   Pol_alpha_znc_sf       
IPR042087   DNA_pol_B_C       
IPR023211   DNA_pol_palm_dom_sf       
IPR032135   DUF4817       

SUPFAM

SSF53098   SSF53098       

Gene 3D

3.15.10.30     1.10.132.60     1.10.3200.20     3.30.420.10     3.90.1600.10    

ProteinModelPortal

A0A2H1VYT4   A0A2A4K9D5   A0A437B8M7   A0A1E1W3G2   I4DMD4   A0A212ENR5   + More
A0A194PJQ5   I4DJH5   H9J1F9   A0A194RP14   A0A0K8TUQ1   A0A1B0D1Z4   Q16JH9   A0A1S4FZ64   A0A182GJ12   B0WJX2   T1PJ85   A0A1I8MF81   A0A1I8PAE8   K7IUQ1   B4N8K2   A0A232FHJ6   A0A182F6T3   W5JKZ1   A0A1B6EBN2   A0A154PPS2   E2AH13   E2BGV6   B3M0S7   A0A0P9APF8   A0A182QMS4   A0A1W4VLL3   A0A182NS82   A0A182SMN6   B4R0E0   A0A3B0KDZ4   Q9VD91   B4I3E3   A0A026VUE4   B4JUI5   A0A182JZ33   A0A182J7E8   A0A034V6W9   W8BWQ6   A0A182PKI2   A0A2S2QF59   B4IV28   H6WAR6   A0A182VYY8   A0A182LSQ4   B4KDF3   A0A0C9RI99   B3NYV7   A0A182RPV3   A0A0M8ZXR2   A0A151IJ61   A0A182UNW1   A0A182UD79   A0A182XBD9   A0A182KLU8   Q7PYK8   A0A182I081   A0A0L0C940   B4GDR6   Q295K2   A0A0A1WCE9   A0A3B0JNT9   A0A0M4ENJ7   A0A084VHJ0   B4M576   A0A151WXI6   B4PQW8   F4WUM8   A0A3L8DMQ5   A0A1B0A0F2   A0A158NBA3   A0A2S2PF18   A0A1B0BBM5   A0A1A9W2B8   C4WSR9   A0A1W4WKV5   A0A1B6FSB4   A0A2J7QTL0   A0A336KFN9   E9J958   A0A139WGY8   B4GDR5   A0A067R741   A0A1B0GF46   E0VZK4   B5DYW7   X1X3I2   A0A1B0CVW4   A0A2P8Z1N9   A0A1W4WAR0   T1HEQ9  

KEGG

101742379    no KO assigned | (RefSeq) uncharacterized LOC101742379

GO

GO:0016021   GO:0005615   GO:0051539   GO:0001882   GO:0000166   GO:0003887   GO:0006260   GO:0003677   GO:0046872   GO:0005634  

Subcellular location

Nucleus  

Length:

209

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01667

Exp number, first 60 AAs:

0.000860000000000001

Total prob of N-in:

0.02243

outside

1  -  209

 

 

Pi

33.461671

Theta

228.482397

Tajima's D

0.716517

CLR

0.312453

CSRT

0.584470776461177

Interpretation

Uncertain