Gene

KWMTBOMO09213  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003403

Annotation

PREDICTED:_E2F_transcription_factor_1_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr15(+):13343748-13367461      View in EpiBrowser

Transcription factor

E2F

Location in the cell

Nuclear   Reliability : 4.14

CDS

ATGCCGAGAGGGGTGAAGCGAGGGTCGGCGGAGGGCGAGGCCGAGGTGGTGGTACGAGCCGGGGAGTCTCCATCGCAGACCACGCTATTGGAGAACAGTCCCAGCCAGCCTATCAGTTATCACCTCCTCGACCACGGCTATGGCGCTACCCCAAAGCATCAGATACGCCGCGAGGCGCCCACGGCACCGCCTAAGACATCTGAAGCGGTTAAAAGAAGACTGAACCTTAGCGAGAGCAGTTCCGGGAGTCAAGGACACGTGGTGCCCATGAAAGCTGACTTCAAAACTCCGAAGCAGAAACGCGTCAAAGTTCTCACGCCGTACAGCAGACCGTCCAGTTCTATGAAAAAGTACACAGAACGTTCCAGGTTTGATACATCCCTAGGTTTACTAACGAAGAAATTCGTCGCTTTGTTGAAATCTTCACAGAACGGAGTGCTCGATTTGAACATAGCGGCGGAACATCTGTCCGTTCAGAAACGTCGCATATACGACATCACGAACGTTCTAGAAGGTATAGGAATATTAGAGAAGAGGTCCAAAAACAACATACAATGGAAGTATGGTATGAGCGGCGGGTCGTGCGGCGCGGACGGGTCGACGGCGCGGCGGCTGCGCGGCGAGGTGCGCGCGCTGTCGGCGCGGGAGGCCCGCGTGTCGCGCGCCGTGGCCGCCGCCGAGCTCGCCCTGTCGCGGCTGTCGGCCGACCACGGCGCCAAGGCCTACATCACCTACGCAGACCTGCGCTCCATCGCGGACTTCCGCAACCAGACCGTCATCCCCATCAAGGCGCCGCCCGACACCAGGCTCAGTGTACCTCATCCTGACGAAAAAGGATATATGATCCATTTGAAGTCTTTGTCTGGAGAAATAGAAGTTTATCTTTGTCCAAAGGAAAGGCCTGCTTCACCAACAGTGTCAGGGATGTCTTCGGATCCTCTTCTAGAAGACAACAAAGCGTTACTCGCACCTCTCATCGCGCAAATGCAATCAGCCTCCGAACAGTTCATGCGACCTGTGAAGCGGGAGATGGAGGACGGCGAGTCGGGAGCTCGTGCGCTGGTGGTGTGCACGCCTTGCGTCACCGACCCCACGCTGCCGCTCCCCGCCGCGCCCCTCGCGCCCCACGCCGCACCGCACGCCACCCCCTCCCCGCCCTCGCCGCACCGCACGCCCCCGCGGCACACCCGAGCAGCCGACCTCTCCACGCCAGACAGTGGTCGCGCCCGCGGTCGGCTGCGCAACGCTCTCATCGCGGACAGCGACGACTTCGCGCCCATCATGGGCGGCGGACGCTTCCAGCTGCAGACGGAGGACCAGGAGTCAGAACCGCTGGAGTTGGAGCCGTTCCTTGCGCTGGAGCCTCCGATGTCCGCCACCGACTACGGCTTCTGTCTGGACCACGACGAGGGCCTGTCGGAACTGTTCGACTTCGAGTTCTAG

Protein

MPRGVKRGSAEGEAEVVVRAGESPSQTTLLENSPSQPISYHLLDHGYGATPKHQIRREAPTAPPKTSEAVKRRLNLSESSSGSQGHVVPMKADFKTPKQKRVKVLTPYSRPSSSMKKYTERSRFDTSLGLLTKKFVALLKSSQNGVLDLNIAAEHLSVQKRRIYDITNVLEGIGILEKRSKNNIQWKYGMSGGSCGADGSTARRLRGEVRALSAREARVSRAVAAAELALSRLSADHGAKAYITYADLRSIADFRNQTVIPIKAPPDTRLSVPHPDEKGYMIHLKSLSGEIEVYLCPKERPASPTVSGMSSDPLLEDNKALLAPLIAQMQSASEQFMRPVKREMEDGESGARALVVCTPCVTDPTLPLPAAPLAPHAAPHATPSPPSPHRTPPRHTRAADLSTPDSGRARGRLRNALIADSDDFAPIMGGGRFQLQTEDQESEPLELEPFLALEPPMSATDYGFCLDHDEGLSELFDFEF

Similarity

Belongs to the E2F/DP family.

Uniprot

A0A2S1ZNV4   B6ZL89   S4PYB9   A0A212ENN6   A0A194PJE9   A0A3S2L6N4   + More
A0A194RK94   A0A0C9QJ25   E2AH09   A0A0L7RG92   A0A154PNH8   A0A195FXH4   A0A195BU67   A0A158NUG2   A0A026VUU1   A0A0J7KUE7   A0A1Z1JN55   A0A3R7QIL0  

Pubmed

19121390    23622113    22118469    26354079    20798317    21347285    + More
24508170    30249741    28558060   

EMBL

MF352002    AWK27026.1    BABH01023786    BABH01023787    AB457001    BAG85354.2    + More
GAIX01003558    JAA89002.1    AGBW02013624    OWR43115.1    KQ459602    KPI93551.1    RSAL01000116    RVE46849.1    KQ460106    KPJ17760.1    GBYB01000600    GBYB01000601    GBYB01000602    JAG70367.1    JAG70368.1    JAG70369.1    GL439444    EFN67281.1    KQ414598    KOC69855.1    KQ435007    KZC13431.1    KQ981193    KYN45126.1    KQ976417    KYM89959.1    ADTU01026422    ADTU01026423    KK107899    QOIP01000006    EZA47281.1    RLU21560.1    LBMM01003163    KMQ93879.1    KY628943    ARW29624.1    QCYY01002655    ROT68586.1   

Proteomes

UP000005204    UP000007151    UP000053268    UP000283053    UP000053240    UP000000311    + More
UP000053825    UP000076502    UP000078541    UP000078540    UP000005205    UP000053097    UP000279307    UP000036403    UP000283509   

PRIDE

B6ZL89   

Pfam

PF02319   E2F_TDP        + More
PF16421   E2F_CC-MB

Interpro

IPR032198   E2F_CC-MB        + More
IPR015633   E2F       
IPR036390   WH_DNA-bd_sf       
IPR036388   WH-like_DNA-bd_sf       
IPR003316   E2F_WHTH_DNA-bd_dom       
IPR037241   E2F-DP_heterodim       

SUPFAM

SSF46785   SSF46785        + More
SSF144074   SSF144074       

Gene 3D

1.10.10.10    

CDD

cd14660  E2F_DD

ProteinModelPortal

A0A2S1ZNV4   B6ZL89   S4PYB9   A0A212ENN6   A0A194PJE9   A0A3S2L6N4   + More
A0A194RK94   A0A0C9QJ25   E2AH09   A0A0L7RG92   A0A154PNH8   A0A195FXH4   A0A195BU67   A0A158NUG2   A0A026VUU1   A0A0J7KUE7   A0A1Z1JN55   A0A3R7QIL0  

PDB

1CF7     E-value=1.39051e-18,     Score=229

KEGG

100216494    K09389 transcription factor E2F2 | (RefSeq) E2f1; E2F transcription factor 1

GO

GO:0003677   GO:0046983   GO:0005634   GO:0003700   GO:0005667   GO:0006355   GO:0006260   GO:0008408   GO:0016020   GO:0016876   GO:0043039  

PANTHER

PTHR12081  

Subcellular location

Nucleus  

Length:

480

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0002

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00410

outside

1  -  480

 

 

Pi

202.3401

Theta

17.595502

Tajima's D

0.921453

CLR

0.443065

CSRT

0.648867556622169

Interpretation

Uncertain