Gene

KWMTBOMO09212  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003402

Annotation

archease_[Bombyx_mori]

Location

Bomo_Chr15(+):13330648-13334761      View in EpiBrowser

Full name

Protein archease-like      

Location in the cell

Cytoplasmic   Reliability : 2.296

CDS

ATGGATGAAGAATTAGGCGGTATTTCCGAAGAATATTATGATATACCTCCTGTTAAATATGAATATTTGGACCATACTGCTGATGTTCAATTACACGCATGGGGCGACAGTCTTAAAGAAGCCTTCGAGCAGTGCGGGATGGCGATGTTCGGTTACATGACCGAGCTTGAGTACGTCCAGATCAAGGATGTTCACACCATCGAAGCGAGCGCTGACGATCTCATGGGATTACTTTACCACTTCCTCGACGAACTGTTGTTTTTATTCTCCTACGAACCATTTTTGATATGCAAGAAGTTAGTCATAACGGAGTTTAACACGCAAGAGTTCAAGATAGTGTGTAGGTGTTACGGCGAGGAGTTCGTAATTGGCAAACATCCCCAAGGCACAGAAGTCAAAGCTATAACTTACTCGGCCATGCAGATCATTGACGATCCAAAGGACAATAAGTACGAAGTGTTTGTTATCATTGACATATAA

Protein

MDEELGGISEEYYDIPPVKYEYLDHTADVQLHAWGDSLKEAFEQCGMAMFGYMTELEYVQIKDVHTIEASADDLMGLLYHFLDELLFLFSYEPFLICKKLVITEFNTQEFKIVCRCYGEEFVIGKHPQGTEVKAITYSAMQIIDDPKDNKYEVFVIIDI

Description

Component of the tRNA-splicing ligase complex required to facilitate the enzymatic turnover of catalytic subunit RtcB (CG9987).

Similarity

Belongs to the archease family.

Keywords

Calcium   Complete proteome   Metal-binding   Reference proteome   tRNA processing  

Feature

chain  Protein archease-like

Uniprot

Q1HPX5   A0A2A4KB50   A0A2H1WEF7   A0A212ENQ2   A0A437B8Q5   S4NXC6   + More
I4DKV1   A0A0L7L6M8   A0A1E1W737   A0A194RJZ7   D6WKY5   A0A1Y1MJT2   A0A1Y1MHT1   B3M0S8   A0A1B0GF44   A0A1A9W2C5   A0A034WQB4   A0A0L0C931   A0A0M4EH88   A0A1B0BBM6   A0A1I8PWK9   B4N8K3   A0A1A9YK03   A0A1W4X5H0   A0A1B0A0D5   J3JY63   A0A0K8WJ82   A0A1L8EDU5   A0A1A9UYH2   A0A1I8NF25   N6ULH7   B4PQW7   A0A0A1WLA8   B4IV27   B3NYV8   W8BNK3   B4LZ50   A0A3B0KJG7   Q295K3   B4GDR4   A0A1W4VKS5   B4KBJ6   B4I3E4   B4R0E1   B4JGW3   H0RNK8   Q9VD92   A0A026VU70   A0A182GMJ5   A0A151IVF1   A0A0K8TP52   A0A182RPW2   F4X7V9   E9IQV9   Q16KZ9   A0A1S4FX94   W5JKK5   A0A0T6BGV9   W8CCD9   A0A182XVT3   A0A2M4AT22   A0A182F6S5   A0A2M4ATM5   A0A2M4ATQ2   A0A195FXG6   A0A182J032   A0A182KAH2   U5EWL4   A0A182VYX9   A0A084VHK8   A0A182VN96   A0A182TDK1   A0A182XBE7   A0A182SR17   Q7PYJ8   A0A182Q0E3   A0A1Y1MJY4   A0A182NS90   A0A182MPK0   A0A195BTF4   A0A158NUG1   E2BMP9   A0A182PKH5   A0A1Y1MMR7   A0A182I088   B0XLR6   A0A182KLW2   A0A195BZ62   A0A1B6KSH9   E2AH10   A0A0L7RGN7   K7IUQ3   A0A0C9R2I9   A0A023EGZ0   A0A1L8DB54   A0A0N0BEI8   A0A1B6GXS3   A0A131Y5W9   A0A1Q3FCL4   A0A1B0CVW3  

Pubmed

19121390    22118469    23622113    22651552    26354079    26227816    + More
18362917    19820115    28004739    17994087    25348373    26108605    22516182    25315136    23537049    17550304    25830018    24495485    15632085    10731132    12537572    24508170    30249741    26483478    26369729    21719571    21282665    17510324    20920257    23761445    25244985    24438588    12364791    14747013    17210077    21347285    20798317    20966253    20075255    24945155    29652888   

EMBL

BABH01023786    DQ443277    ABF51366.1    NWSH01000012    PCG80892.1    ODYU01008115    + More
SOQ51441.1    AGBW02013624    OWR43114.1    RSAL01000116    RVE46848.1    GAIX01009104    JAA83456.1    AK401919    KQ459602    BAM18541.1    KPI93550.1    JTDY01002633    KOB71050.1    GDQN01008393    JAT82661.1    KQ460106    KPJ17759.1    KQ971343    EFA04039.1    GEZM01030905    GEZM01030902    GEZM01030890    GEZM01030883    GEZM01030880    JAV85198.1    GEZM01030895    JAV85211.1    CH902617    EDV42093.1    CCAG010012761    GAKP01002425    JAC56527.1    JRES01000752    KNC28752.1    CP012526    ALC45658.1    JXJN01011551    CH964232    EDW81454.1    BT128187    AEE63148.1    GDHF01001162    JAI51152.1    GFDG01001963    JAV16836.1    APGK01028352    KB740686    KB631930    ENN79557.1    ERL87314.1    CM000160    EDW96291.1    GBXI01014821    JAC99470.1    CH892596    EDX00241.1    CH954181    EDV48221.1    GAMC01003865    JAC02691.1    CH940650    EDW67057.1    OUUW01000008    SPP83898.1    CM000070    EAL28708.1    CH479182    EDW34575.1    CH933806    EDW13663.1    CH480821    EDW55308.1    CM000364    EDX12066.1    CH916369    EDV93741.1    BT132930    AEW12902.1    AE014297    BT003491    KK107899    QOIP01000006    EZA47282.1    RLU21557.1    JXUM01074847    KQ562855    KXJ74990.1    KQ980900    KYN11693.1    GDAI01001446    JAI16157.1    GL888900    EGI57445.1    GL764976    EFZ17043.1    CH477929    EAT34985.1    ADMH02001255    ETN63410.1    LJIG01000443    KRT86497.1    GAMC01003866    JAC02690.1    GGFK01010599    MBW43920.1    GGFK01010812    MBW44133.1    GGFK01010864    MBW44185.1    KQ981193    KYN45128.1    GANO01001364    JAB58507.1    ATLV01013177    KE524842    KFB37452.1    AAAB01008987    EAA01158.2    AXCN02000204    GEZM01030910    GEZM01030909    GEZM01030904    GEZM01030903    GEZM01030881    GEZM01030879    GEZM01030878    GEZM01030876    JAV85258.1    AXCM01013848    KQ976417    KYM89958.1    ADTU01026421    GL449285    EFN83034.1    GEZM01030896    GEZM01030894    GEZM01030886    GEZM01030885    JAV85236.1    APCN01002055    DS234676    EDS34731.1    KQ978501    KYM93615.1    GEBQ01025574    JAT14403.1    GL439444    EFN67282.1    KQ414598    KOC69856.1    AAZX01010814    GBYB01010314    JAG80081.1    GAPW01005509    JAC08089.1    GFDF01010504    JAV03580.1    KQ435830    KOX71722.1    GECZ01002572    JAS67197.1    GEFM01002350    GEGO01000804    JAP73446.1    JAR94600.1    GFDL01009755    JAV25290.1    AJWK01031344   

Proteomes

UP000005204    UP000218220    UP000007151    UP000283053    UP000053268    UP000037510    + More
UP000053240    UP000007266    UP000007801    UP000092444    UP000091820    UP000037069    UP000092553    UP000092460    UP000095300    UP000007798    UP000092443    UP000192223    UP000092445    UP000078200    UP000095301    UP000019118    UP000030742    UP000002282    UP000008711    UP000008792    UP000268350    UP000001819    UP000008744    UP000192221    UP000009192    UP000001292    UP000000304    UP000001070    UP000000803    UP000053097    UP000279307    UP000069940    UP000249989    UP000078492    UP000075900    UP000007755    UP000008820    UP000000673    UP000076408    UP000069272    UP000078541    UP000075880    UP000075881    UP000075920    UP000030765    UP000075903    UP000075902    UP000076407    UP000075901    UP000007062    UP000075886    UP000075884    UP000075883    UP000078540    UP000005205    UP000008237    UP000075885    UP000075840    UP000002320    UP000075882    UP000078542    UP000000311    UP000053825    UP000002358    UP000053105    UP000092461   

PRIDE

Q1HPX5   

Pfam

PF01951   Archease

Interpro

IPR002804   Archease        + More
IPR023572   Archease_dom       
IPR036820   Archease_dom_sf       

SUPFAM

SSF69819   SSF69819       

Gene 3D

3.55.10.10    

ProteinModelPortal

Q1HPX5   A0A2A4KB50   A0A2H1WEF7   A0A212ENQ2   A0A437B8Q5   S4NXC6   + More
I4DKV1   A0A0L7L6M8   A0A1E1W737   A0A194RJZ7   D6WKY5   A0A1Y1MJT2   A0A1Y1MHT1   B3M0S8   A0A1B0GF44   A0A1A9W2C5   A0A034WQB4   A0A0L0C931   A0A0M4EH88   A0A1B0BBM6   A0A1I8PWK9   B4N8K3   A0A1A9YK03   A0A1W4X5H0   A0A1B0A0D5   J3JY63   A0A0K8WJ82   A0A1L8EDU5   A0A1A9UYH2   A0A1I8NF25   N6ULH7   B4PQW7   A0A0A1WLA8   B4IV27   B3NYV8   W8BNK3   B4LZ50   A0A3B0KJG7   Q295K3   B4GDR4   A0A1W4VKS5   B4KBJ6   B4I3E4   B4R0E1   B4JGW3   H0RNK8   Q9VD92   A0A026VU70   A0A182GMJ5   A0A151IVF1   A0A0K8TP52   A0A182RPW2   F4X7V9   E9IQV9   Q16KZ9   A0A1S4FX94   W5JKK5   A0A0T6BGV9   W8CCD9   A0A182XVT3   A0A2M4AT22   A0A182F6S5   A0A2M4ATM5   A0A2M4ATQ2   A0A195FXG6   A0A182J032   A0A182KAH2   U5EWL4   A0A182VYX9   A0A084VHK8   A0A182VN96   A0A182TDK1   A0A182XBE7   A0A182SR17   Q7PYJ8   A0A182Q0E3   A0A1Y1MJY4   A0A182NS90   A0A182MPK0   A0A195BTF4   A0A158NUG1   E2BMP9   A0A182PKH5   A0A1Y1MMR7   A0A182I088   B0XLR6   A0A182KLW2   A0A195BZ62   A0A1B6KSH9   E2AH10   A0A0L7RGN7   K7IUQ3   A0A0C9R2I9   A0A023EGZ0   A0A1L8DB54   A0A0N0BEI8   A0A1B6GXS3   A0A131Y5W9   A0A1Q3FCL4   A0A1B0CVW3  

PDB

5YZ1     E-value=1.89395e-32,     Score=342

KEGG

732964    no KO assigned | (RefSeq) archease

GO

GO:0006388   GO:0072669   GO:0048680   GO:0008033   GO:0046872  

PANTHER

PTHR12682  

Length:

159

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15296

Exp number, first 60 AAs:

0.00039

Total prob of N-in:

0.03053

outside

1  -  159

 

 

Pi

194.992777

Theta

144.268667

Tajima's D

-0.832873

CLR

0.359018

CSRT

0.164641767911604

Interpretation

Uncertain