Gene

KWMTBOMO09210  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003348

Annotation

hypothetical_protein_KGM_08054_[Danaus_plexippus]

Location

Bomo_Chr15(-):13318422-13324477      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.099

CDS

ATGGCAGAAACGGCCATTGAGACCACACCGGGCGATGAAAACGATGATAATTGGTTATACGGGGATTCTGGCGGAGATGCTAACCAAGAATCCACTGAGGAAACTCAAGAAGTACAAAAATCGGCCGACGTCGTCGGTGGTGCTGACGAAGAAAATCAAGATGAAGAGGAAGGTAATAACGATTCGGAATTAAATGATGAGCATTTTGCTGAGGTAACGCGCGAGGATCAAAATGGTGACGCTGATAGCCAAGAGAACGGTGACTCTGACTCGGACGACAGCGATGACGTCAAAGTCACCATTGGAGAGATCAAGTCTGGGTCACAATATGCCAGCCTAAACATAAAAAGGGGAGTTGGCTTGGTAGCTTCTGCAGGGGGACCTGAGAAACCTCGTTCAGTAACTACAACAAGTGGAAAAGTGACATTAGAGGACTTGGAGGGGCCAGGAAGTATTAATGGAGTTCCCGCTTTGGAATTCAATATTGATACTATAGAAGATAAACCTTGGAATAAGCCGGGTGCTGATATATCAGATTATTTCAATTATGGTTTCAATGAAGTAACATGGAGTGCTTATTGTGAGCGGCAGCGACGAATGCGAATCAACGAAACAGGTGTGGGAATGCATATGGGATCGGTTCCCCGTCCACCAATGCCAGACATGAGGCGCCCCCCAAACATTAGACACGATGATGGAATACCACCTCCCATGACAAATAACTATCAGTCCAGAGAAAACACTATTCAGGTGATGACAGCGGAGCGACGTGAGTACGGGCGCGGCCACCCCCGCGAGATGCCGCCGCCGGAGTTCTTCTCTGGGCCGCCCACTGACTACTACCAGCCCCCGCACGCTACATATGACGAGCCATGGGGACACGGACAGGCACCGGGCGGCTGGACCCCCTCCGACATCAAGGAGCTGACGCCGGCGCCGGGCGCGCTGACCCCCGCCGCGCCCCCCACCCTGCCCCCCGCCGCCGCGCCCCTCTCCATGCACCCCCCCTACGCGCCGCCCTACCGACAAGCGCACCCCGCCGACACCAGGGAGCGACACCGCCGAGATGATGTAACCTAA

Protein

MAETAIETTPGDENDDNWLYGDSGGDANQESTEETQEVQKSADVVGGADEENQDEEEGNNDSELNDEHFAEVTREDQNGDADSQENGDSDSDDSDDVKVTIGEIKSGSQYASLNIKRGVGLVASAGGPEKPRSVTTTSGKVTLEDLEGPGSINGVPALEFNIDTIEDKPWNKPGADISDYFNYGFNEVTWSAYCERQRRMRINETGVGMHMGSVPRPPMPDMRRPPNIRHDDGIPPPMTNNYQSRENTIQVMTAERREYGRGHPREMPPPEFFSGPPTDYYQPPHATYDEPWGHGQAPGGWTPSDIKELTPAPGALTPAAPPTLPPAAAPLSMHPPYAPPYRQAHPADTRERHRRDDVT

Uniprot

H9J1G1   A0A2H1WEE7   A0A2A4KB35   A0A212ENN8   A0A194PKL7   A0A194RJM8   + More
A0A437B8J3   A0A1W4X1L4   A0A1Y1LWG2   A0A1Y1M0P7   A0A026X0X0   A0A1B6C6E7   A0A088AHL6   A0A2A3EE07   A0A1B6IHY2   A0A1B6LW86   A0A154NZK1   E2BAT1   A0A151XCG7   A0A158NLF8   A0A195F203   A0A195E796   E9IU56   A0A195B1M9   A0A1B0GK29   A0A195CYC2   E2B1C5   A0A0C9RDD9   A0A1B0DFI8   A0A232FDS7   A0A0J7KKR2   A0A1L8DHM0   A0A0A1WWR9   A0A034WE34   B4K4P8   A0A0K8UG31   A0A3B0JPW9   A0A0K8VTW9   A0A3B0JQ60   A0A0M4EV00   K7IUQ6   A0A0M9A5W0   A0A067QSI4   W8BUY1  

Pubmed

19121390    22118469    26354079    28004739    24508170    30249741    + More
20798317    21347285    21282665    28648823    25830018    25348373    17994087    20075255    24845553    24495485   

EMBL

BABH01023786    ODYU01008115    SOQ51439.1    NWSH01000012    PCG80872.1    AGBW02013624    + More
OWR43112.1    KQ459602    KPI93548.1    KQ460106    KPJ17757.1    RSAL01000116    RVE46847.1    GEZM01045192    JAV77872.1    GEZM01045190    JAV77875.1    KK107063    QOIP01000005    EZA61039.1    RLU22428.1    GEDC01028473    JAS08825.1    KZ288282    PBC29522.1    GECU01021191    JAS86515.1    GEBQ01012049    JAT27928.1    KQ434786    KZC05041.1    GL446831    EFN87216.1    KQ982314    KYQ58062.1    ADTU01019395    KQ981864    KYN34411.1    KQ979568    KYN20732.1    GL765841    EFZ15902.1    KQ976662    KYM78376.1    AJWK01022514    KQ977115    KYN05653.1    GL444841    EFN60525.1    GBYB01014603    GBYB01014604    JAG84370.1    JAG84371.1    AJVK01058759    NNAY01000426    OXU28497.1    LBMM01006200    KMQ90824.1    GFDF01008234    JAV05850.1    GBXI01011454    JAD02838.1    GAKP01006375    JAC52577.1    CH933806    EDW15024.1    GDHF01027059    JAI25255.1    OUUW01000008    SPP84254.1    GDHF01010304    JAI42010.1    SPP84255.1    CP012526    ALC47017.1    AAZX01002639    KQ435727    KOX77867.1    KK853626    KDR04030.1    GAMC01005782    JAC00774.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000283053    + More
UP000192223    UP000053097    UP000279307    UP000005203    UP000242457    UP000076502    UP000008237    UP000075809    UP000005205    UP000078541    UP000078492    UP000078540    UP000092461    UP000078542    UP000000311    UP000092462    UP000215335    UP000036403    UP000009192    UP000268350    UP000092553    UP000002358    UP000053105    UP000027135   

PRIDE

H9J1G1   

Pfam

PF05182   Fip1        + More
PF01390   SEA
PF02229   PC4
PF01846   FF

Interpro

IPR039849   Fip1-like        + More
IPR007854   Fip1_dom       
IPR000082   SEA_dom       
IPR036364   SEA_dom_sf       
IPR009044   ssDNA-bd_transcriptional_reg       
IPR003173   PC4       
IPR002713   FF_domain       
IPR036517   FF_domain_sf       

SUPFAM

SSF82671   SSF82671        + More
SSF54447   SSF54447       
SSF81698   SSF81698       

Gene 3D

2.30.31.10     1.10.10.440    

ProteinModelPortal

H9J1G1   A0A2H1WEE7   A0A2A4KB35   A0A212ENN8   A0A194PKL7   A0A194RJM8   + More
A0A437B8J3   A0A1W4X1L4   A0A1Y1LWG2   A0A1Y1M0P7   A0A026X0X0   A0A1B6C6E7   A0A088AHL6   A0A2A3EE07   A0A1B6IHY2   A0A1B6LW86   A0A154NZK1   E2BAT1   A0A151XCG7   A0A158NLF8   A0A195F203   A0A195E796   E9IU56   A0A195B1M9   A0A1B0GK29   A0A195CYC2   E2B1C5   A0A0C9RDD9   A0A1B0DFI8   A0A232FDS7   A0A0J7KKR2   A0A1L8DHM0   A0A0A1WWR9   A0A034WE34   B4K4P8   A0A0K8UG31   A0A3B0JPW9   A0A0K8VTW9   A0A3B0JQ60   A0A0M4EV00   K7IUQ6   A0A0M9A5W0   A0A067QSI4   W8BUY1  

KEGG

101743440    K14405 pre-mRNA 3'-end-processing factor FIP1 | (RefSeq) pre-mRNA 3'-end-processing factor FIP1

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0098789   GO:0005847   GO:0016021   GO:0006355   GO:0003677   GO:0045944   GO:0017022   GO:0006398  

PANTHER

PTHR13484  

Length:

359

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00034

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02021

outside

1  -  359

 

 

Pi

4.702809

Theta

124.820497

Tajima's D

-1.463326

CLR

0.532059

CSRT

0.063696815159242

Interpretation

Uncertain